Bogac L. Kaynak

ORCID: 0000-0002-6946-9603
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About
Contact & Profiles
Research Areas
  • Congenital heart defects research
  • CRISPR and Genetic Engineering
  • Congenital Heart Disease Studies
  • Genomics and Chromatin Dynamics
  • Protein Degradation and Inhibitors
  • Developmental Biology and Gene Regulation
  • Chromatin Remodeling and Cancer
  • Cell Adhesion Molecules Research
  • Chromosomal and Genetic Variations
  • RNA modifications and cancer
  • Genomic variations and chromosomal abnormalities
  • Single-cell and spatial transcriptomics
  • Cardiomyopathy and Myosin Studies
  • Eicosanoids and Hypertension Pharmacology
  • Renal and related cancers
  • Pluripotent Stem Cells Research
  • Retinopathy of Prematurity Studies
  • Cardiac Fibrosis and Remodeling
  • Epigenetics and DNA Methylation
  • Nitric Oxide and Endothelin Effects
  • Retinoids in leukemia and cellular processes
  • Antioxidant Activity and Oxidative Stress
  • Tissue Engineering and Regenerative Medicine
  • Neuropeptides and Animal Physiology
  • Peptidase Inhibition and Analysis

University of Helsinki
2019-2023

Gladstone Institutes
2009-2016

Max Planck Institute for Molecular Genetics
2003-2008

Max Planck Society
2003-2004

Deutsches Herzzentrum der Charité
2003

Deutsches Herzzentrum München
2003

Chromatin remodeling and histone modifications facilitate access of transcription factors to DNA by promoting the unwinding destabilization histone–DNA interactions. We present DPF3, a new epigenetic key factor for heart muscle development characterized double PHD finger. DPF3 is associated with BAF chromatin complex binds methylated acetylated lysine residues 3 4. Thus, may represent first plant homeodomains that bind lysines, feature previously only shown bromodomain. During Dpf3 expressed...

10.1101/gad.471408 article EN Genes & Development 2008-09-01

We present the first genome-wide cDNA array analysis of human congenitally malformed hearts and attempted to partially elucidate these complex phenotypes. Most congenital heart defects, which account for largest number birth defects in humans, represent genetic disorders. As a consequence malformation, abnormal hemodynamic features occur cause an adaptation process heart.The statistical our data suggests distinct gene expression profiles associated with tetralogy Fallot, ventricular septal...

10.1161/01.cir.0000066694.21510.e2 article EN Circulation 2003-05-19

Non-cell-autonomous signals often play crucial roles in cell fate decisions during animal development. Reciprocal signaling between endoderm and mesoderm is vital for embryonic development, yet the key mechanisms remain unclear. Here, we show that endodermal cells efficiently promote emergence of mesodermal neighboring population through containing an essential short-range component. The endoderm-mesoderm interaction promoted precardiac formation mouse stem involved production fibronectin....

10.1242/dev.089052 article EN Development 2013-05-29

Acute myeloid leukemia (AML) is characterized by several recurrent mutations that affect disease biology and phenotype, response to therapy risk of subsequent relapse. Though tyrosine kinase inhibitors have gained regulatory approval for the treatment AML, it unclear whether single drugs targeting a specific genomic alteration will be sufficient eradicate disease. Fortuitously, kinase/bromodomain allow downstream transcriptional effectors oncogenic pathways, allowing impediment drug...

10.1371/journal.pone.0320443 article EN cc-by PLoS ONE 2025-03-28

Non-cell-autonomous signals often play crucial roles in cell fate decisions during animal development. Reciprocal signaling between endoderm and mesoderm is vital for embryonic development, yet the key mechanisms remain unclear. Here, we show that endodermal cells efficiently promote emergence of mesodermal neighboring population through containing an essential short-range component. The endoderm-mesoderm interaction promoted precardiac formation mouse stem involved production fibronectin....

10.1242/jcs.136309 article EN Journal of Cell Science 2013-06-15

Several vasoregulatory systems including the renin-angiotensin system, sympathetic vasoregulation, and cytokine release have been studied extensively. The aim of present study was to establish a physiogenomic screening model for differentially expressed genes in regulation blood pressure that might give hint as new mechanisms. We induced acute hypotension normotensive rats, assuming will counteract hypotension. Microarray transcriptome analysis performed from kidneys 6 h after induction...

10.1152/physiolgenomics.00077.2005 article EN Physiological Genomics 2005-06-07

Pharmacological modulation of cell fate decisions and developmental gene regulatory networks holds promise for the treatment heart failure. Compounds that target tissue-specific transcription factors could overcome non-specific effects small molecules lead to regeneration muscle following myocardial infarction. Due cellular heterogeneity in heart, activation programs representing specific atrial ventricular cardiomyocyte subtypes would be highly desirable. Chemical compounds modulate used...

10.1186/s13287-021-02259-z article EN cc-by Stem Cell Research & Therapy 2021-03-18

Heart formation requires transcriptional regulators that underlie congenital anomalies and the fetal gene program activated during heart failure. Attributing effects of disease (CHD) missense variants to disruption specific protein domains allows for a mechanistic understanding CHDs improved diagnostics. A combined chemical genetic approach was employed identify novel CHD drivers, consisting screening pluripotent stem cell (PSC) differentiation, expression analyses native tissues primary...

10.1016/j.bbadis.2023.166689 article EN cc-by Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease 2023-03-21

Abstract Reliable in vitro models to assess developmental toxicity of drugs and chemicals would lead improvement fetal safety a reduced cost drug development. The validated embryonic stem cell test (EST) uses cardiac differentiation mouse cells (mESCs) predict vivo toxicity, but does not take into account the stage-specific patterning progenitor populations anterior (ventricular) posterior (atrial) compartments. In this study, we generated novel dual reporter mESC line with fluorescent...

10.1007/s00204-019-02632-1 article EN cc-by Archives of Toxicology 2019-12-06

Vitamin A is a micronutrient and signaling molecule that regulates transcription, cellular differentiation, organ homeostasis. Additionally, metabolites of are utilized as differentiation agents in the treatment hematological cancers skin disorders, necessitating further study into effects both nutrient deficiency exogenous delivery its on cardiovascular phenotypes. Though vitamin A/retinoids well-known regulators cardiac formation, recent evidence has emerged supports their role...

10.3390/hearts1020013 article EN cc-by Hearts 2020-09-21

The procholecystokinin (proCCK) gene encodes a secreted peptide known to regulate the digestive, endocrine, and nervous systems. Though recently proposed as biomarker for heart dysfunction, its physiological role in both embryonic adult is poorly understood, there are no reports of tissue-specific regulators cholecystokinin signaling or other tissues. In present study, mRNA proCCK was observed cardiac tissues during mouse development, establishing an early marker differentiated...

10.1016/j.peptides.2020.170459 article EN cc-by-nc-nd Peptides 2020-11-26

Zusammenfassung In einer genomweiten Genexpressionsstudie wurden normale und fehlgebildete menschliche Herzen mittels cDNS-Arrays untersucht. Statistische bioinformatische Methoden benutzt, um gewebe- krankheitsspezifische Genexpressionsmuster zu identifizieren funktionelle Genkategorien mit bestimmten Phänotypen assoziieren.

10.1524/itit.46.1.26.26507 article DE it - Information Technology 2004-01-01
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