David Lim

ORCID: 0000-0002-7149-6459
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About
Contact & Profiles
Research Areas
  • Carbohydrate Chemistry and Synthesis
  • Glycosylation and Glycoproteins Research
  • International Science and Diplomacy
  • Click Chemistry and Applications
  • Organoselenium and organotellurium chemistry
  • Chemical Synthesis and Analysis
  • Fungal Biology and Applications
  • Enzyme Catalysis and Immobilization
  • Selenium in Biological Systems
  • Phytochemistry and Bioactivity Studies
  • Estrogen and related hormone effects
  • Synthesis and Biological Evaluation
  • Amino Acid Enzymes and Metabolism
  • Cancer Risks and Factors
  • Chemical Reactions and Isotopes
  • Cholinesterase and Neurodegenerative Diseases
  • Enzyme function and inhibition
  • Enzyme Production and Characterization
  • Peptidase Inhibition and Analysis
  • Cancer survivorship and care
  • Genomics and Chromatin Dynamics
  • Polyamine Metabolism and Applications
  • Microbial Metabolic Engineering and Bioproduction
  • History and advancements in chemistry
  • Protein Interaction Studies and Fluorescence Analysis

University of British Columbia
2024-2025

University of Bern
2021-2025

Sidney Kimmel Comprehensive Cancer Center
2020-2023

Statistics Collaborative
2023

Johns Hopkins Hospital
2020-2021

Johns Hopkins University
2021

University of Basel
2019-2020

University of Canterbury
2014-2017

Christchurch Clinical Studies Trust
2017

Christ University
2016

Abstract The conversion of sugars into glycomimetics typically involves multiple protecting‐group manipulations. development methodology allowing the direct aqueous free glycosides, and mimics oligosaccharides glycoconjugates in a high‐yielding stereoselective process is highly desirable. combined use 2‐azido‐1,3‐dimethylimidazolinium hexafluorophosphate Cu‐catalyzed Huisgen cycloaddition allowed synthesis range one‐step reaction directly from reducing under conditions. reaction, which...

10.1002/anie.201406694 article EN Angewandte Chemie International Edition 2014-09-08

Heterocyclic amines are a key structural motif for the synthesis of pharmaceuticals (e.g., antibiotics) as well pesticides and flavors. In this regard, imine reductases (IREDs) have recently emerged highly selective sustainable alternative asymmetric reductive amination reactions. Herein, we applied six IREDs, two which were newly identified, in reduction heterocyclic imines with either N, S, or O substitution at C-4. Since IREDs NADPH-dependent enzymes, commercially available, supported...

10.1021/acssuschemeng.4c09676 article EN ACS Sustainable Chemistry & Engineering 2025-03-23

Selective acetylation of only the anomeric hydroxyl group unprotected sugars is possible in aqueous solution. This new one step route to glycosyl acetates may facilitate their use as donors for enzyme catalysed glycosylation.

10.1039/c6sc04667c article EN cc-by-nc Chemical Science 2016-11-11

Glycosyl thiols may be accessed from the corresponding reducing sugars in water without recourse to any sugar projecting groups by way of a DMC mediated reaction with thioacetic acid presence base, and hydrolysis anomeric thioacetate. produced this method used access glycoconjugates, such as glycopeptides use thiol-ene click reaction.

10.1039/c7ob00112f article EN cc-by-nc Organic & Biomolecular Chemistry 2017-01-01

Abstract The N ‐α‐trimethyl 2‐selenohistidine selenoneine is the selenium isolog of natural antioxidant ergothioneine. Sulfur‐to‐selenium substitutions are known to endow proteins and nucleic acids with special activities. In contrast, secondary metabolites that exploit selenium‐specific chemistry rare. Selenoneine therefore provides a unique opportunity study how organoselenides interact cellular processes. this report we describe chemical synthesis other 2‐selenoimidazoles. With synthetic...

10.1002/anie.201908967 article EN Angewandte Chemie International Edition 2019-08-22

Treatment-associated symptoms drive early discontinuation of adjuvant endocrine therapy (ET) for breast cancer. We hypothesized that symptom monitoring with electronic patient-reported outcomes (ePROs) during ET will enhance detection, management, and persistence.

10.1200/op.23.00038 article EN JCO Oncology Practice 2023-09-21

Ergothioneine is a sulfur-containing histidine derivative that emerges from microbial biosynthesis and enters the human body through intestinal uptake regulated distribution into specific tissues. Although proteins involved in are well characterized, less known about degradative pathways of ergothioneine. This report describes crystal structure active form ergothionase oral pathogen Treponema denticola complexed with substrate analogue desmethyl-ergothioneine sulfonic acid. enzyme catalyzes...

10.1002/chem.201901866 article EN Chemistry - A European Journal 2019-06-12

Abstract Ergothioneine is an emerging component of the redox homeostasis system in human cells and microbial pathogens, such as Mycobacterium tuberculosis Burkholderia pseudomallei . The synthesis stable isotope‐labeled ergothioneine derivatives may provide important tools for deciphering distribution, function, metabolism this compound vivo. We describe a general protocol production isotopologues with programmable 2 H, 15 N, 13 C, 34 S, 33 S isotope labeling patterns. This enzyme‐based...

10.1002/anie.202011096 article EN Angewandte Chemie International Edition 2020-09-30

Abstract The conversion of sugars into glycomimetics typically involves multiple protecting‐group manipulations. development methodology allowing the direct aqueous free glycosides, and mimics oligosaccharides glycoconjugates in a high‐yielding stereoselective process is highly desirable. combined use 2‐azido‐1,3‐dimethylimidazolinium hexafluorophosphate Cu‐catalyzed Huisgen cycloaddition allowed synthesis range one‐step reaction directly from reducing under conditions. reaction, which...

10.1002/ange.201406694 article EN Angewandte Chemie 2014-09-08

Weight gain after breast cancer poses health risks. We aimed to identify factors associated with weight during adjuvant endocrine therapy (AET).

10.1007/s11764-023-01408-y article EN cc-by Journal of Cancer Survivorship 2023-06-01

Abstract Sulfoxide synthases are non‐heme iron enzymes that participate in the biosynthesis of thiohistidines, such as ergothioneine and ovothiol A. The sulfoxide synthase EgtB from Chloracidobacterium thermophilum ( Cth EgtB) catalyzes oxidative coupling between side chains N ‐α‐trimethyl histidine (TMH) cysteine (Cys) a reaction entails complete reduction molecular oxygen, carbon–sulfur (C−S) sulfur–oxygen (S−O) bond formation well carbon–hydrogen (C−H) cleavage. In this report, we show...

10.1002/chem.201903898 article EN Chemistry - A European Journal 2019-09-23

Mortality from triple negative breast cancer (TNBC) is significantly higher in African American (AA) women compared to White (WA) emphasizing ethnicity as a major risk factor; however, the molecular determinants that drive aggressive progression of AA-TNBC remain elusive. Here, we demonstrate for first time cells are inherently aggressive, exhibiting elevated growth, migration, and stem-like phenotype WA-TNBC cells. Meta-analysis RNA-sequencing data multiple AA- cell lines shows enrichment...

10.7554/elife.70729 article EN cc-by eLife 2021-12-10

Abstract Ergothioneine is an emerging component of the redox homeostasis system in human cells and microbial pathogens, such as Mycobacterium tuberculosis Burkholderia pseudomallei . The synthesis stable isotope‐labeled ergothioneine derivatives may provide important tools for deciphering distribution, function, metabolism this compound vivo. We describe a general protocol production isotopologues with programmable 2 H, 15 N, 13 C, 34 S, 33 S isotope labeling patterns. This enzyme‐based...

10.1002/ange.202011096 article EN Angewandte Chemie 2020-09-30

Abstract Se‐benzyl selenoimidazolium salts are characterized by remarkable alkyl‐transfer potential under physiological conditions. Structure‐activity relationship studies show that selective monoalkylation of primary amines depends on supramolecular interactions between the selenoimidazole leaving group and target nucleophile. We demonstrate these reagents can be used for site‐selective nearly quantitative modification model protein lysozyme Lys13, bypassing higher intrinsic reactivities...

10.1002/cbic.202000557 article EN ChemBioChem 2020-08-12

Summary The human health implications of exposure to environmental pollutants and food components (e.g. phytoestrogens) that mimic the female hormone 17β‐estradiol (xenoestrogens) are a subject significant debate. In this study, we use published data on dietary phytoestrogen intake sperm concentrations in USA China assess effects concentration as marker male reproductive health. Comparison trends shows has increased from 0.8 mg day −1 1993 13.7 2005 is trending down (not statistically...

10.1111/ijfs.12931 article EN International Journal of Food Science & Technology 2015-10-29

In order to expand the toolbox of enzymes available for thioglycoside synthesis, we describe here first example an extremophilic glycosyl hydrolase from Halothermothrix orenii (HorGH1) engineered towards thioglycosynthase activity with a novel combination mutations. Using triple mutant, HorGH1 M299R/E166A/E354G, range thioglycosides fluoride donors and aromatic thiols could be synthesised exquisite stereoselectivity good excellent conversions (61-93%).

10.1039/d2cc04660a article EN cc-by-nc Chemical Communications 2022-01-01

The interaction of unfractionated heparin (UFH) with universal reversal agent 7 (UHRA-7) is investigated. UHRA-7 composed a hyperbranched polyglycerol core onto which an array methylated tris(2-aminoethylamine) (Me-TREN) charged groups grafted, in turn are shielded layer small chain poly(ethylene glycol) methyl ether (mPEG) chains. This system has previously been shown to be biocompatible and effective at neutralizing heparin. binding constant Kb was determined from isothermal titration...

10.1021/acs.jpcb.4c07120 article EN The Journal of Physical Chemistry B 2024-12-12

Given the rising number of multidrug-resistant (MDR) bacteria, there is a need to design synthetic antimicrobial peptides (AMPs) that are highly active, non-hemolytic, and soluble act as alternatives antibiotics either no longer effective or used drugs last resort. Machine learning tools allow straightforward in silico identification non-hemolytic peptides. Here, we utilized these rank best from two libraries: 1) 8192 with sequence bhxxbhbGAL, where b basic amino acid R K, h hydrophobic...

10.1016/j.ijantimicag.2024.107399 article EN cc-by International Journal of Antimicrobial Agents 2024-12-01

Abstract The N ‐α‐trimethyl 2‐selenohistidine selenoneine is the selenium isolog of natural antioxidant ergothioneine. Sulfur‐to‐selenium substitutions are known to endow proteins and nucleic acids with special activities. In contrast, secondary metabolites that exploit selenium‐specific chemistry rare. Selenoneine therefore provides a unique opportunity study how organoselenides interact cellular processes. this report we describe chemical synthesis other 2‐selenoimidazoles. With synthetic...

10.1002/ange.201908967 article EN Angewandte Chemie 2019-08-22

12053 Background: In the prospective POWER-remote trial, 51% and 12% of overweight/obese breast cancer survivors randomized to either a remotely delivered behavioral intervention or self-directed approach, respectively, lost ≥5% baseline weight. We collected patient-reported outcomes (PROs) examine impact >5% weight loss on symptoms, physical function (PF), wellbeing. hypothesized priori that, regardless study arm, those with would have improved PF at 6 months v. who did not. Methods:...

10.1200/jco.2020.38.15_suppl.12053 article EN Journal of Clinical Oncology 2020-05-20

Abstract Glycosylation of bioactive molecules has been found to improve the pharmacokinetic properties parent molecule. However, their syntheses often require tedious protecting group manipulations. The development methodologies which allow direct aqueous conversion unprotected sugars into glycosides is therefore an ambitious goal. Herein, we present a broadly applicable method for synthesis selenoglycosides in water. We show ease conjugation glycosyl diselenides with various biomolecules,...

10.1002/ejoc.202300496 article EN cc-by-nc European Journal of Organic Chemistry 2023-07-19

The development of a procedure for the one-pot synthesis glycosyl benzoates directly from unprotected sugars in aqueous media using 2-chloro-1,3-dimethylimidazolium chloride (DMC), thiobenzoic acid, and triethylamine is reported. These donors are excellent substrates wild-type mutant glycosidases. β-Glucosyl benzoate was hydrolysed by GH1 β-glucosidase derived Halothermothrix orenii (HorGH1). Subsequent use this substrate thioligase-mediated glycosylation p-nitrothiophenol demonstrated their...

10.1039/d3ob00979c article EN cc-by Organic & Biomolecular Chemistry 2023-01-01
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