Fred Loney
A5036915193- Bioinformatics and Genomic Networks
- Gene expression and cancer classification
- Scientific Computing and Data Management
- Microbial Metabolic Engineering and Bioproduction
- Advanced Biosensing Techniques and Applications
- Distributed and Parallel Computing Systems
- vaccines and immunoinformatics approaches
- Advanced Software Engineering Methodologies
- Advanced Fluorescence Microscopy Techniques
- Formal Methods in Verification
- Single-cell and spatial transcriptomics
- Gene Regulatory Network Analysis
- Influenza Virus Research Studies
- interferon and immune responses
- Data Management and Algorithms
- Recommender Systems and Techniques
- Computational Drug Discovery Methods
- Embedded Systems Design Techniques
- Protein Structure and Dynamics
- Rough Sets and Fuzzy Logic
Oregon Health & Science University
2018-2021
Mentor Technologies
1991
Abstract The Reactome Knowledgebase (https://reactome.org) provides molecular details of signal transduction, transport, DNA replication, metabolism and other cellular processes as an ordered network transformations in a single consistent data model, extended version classic metabolic map. functions both archive biological tool for discovering functional relationships such gene expression profiles or somatic mutation catalogs from tumor cells. To extend our ability to annotate human disease...
Vaccines stimulate various immune factors critical to protective responses. However, a comprehensive picture of vaccine-induced and pathways have not been systematically collected analyzed. To address this issue, we developed VaximmutorDB, web-based database system vaccine (abbreviated as “vaximmutors”) manually curated from peer-reviewed articles. VaximmutorDB currently stores 1,740 13 host species (e.g., human, mouse, pig). These vaximmutors were induced by 154 vaccines for 46 pathogens....
<ns4:p>Pathway- and network-based approaches project seemingly unrelated genes onto the context of pathways networks, enhancing analysis power that cannot be achieved via gene-based approaches. Pathway network are routinely applied in large-scale data for cancer other complicated diseases. ReactomeFIViz is a Cytoscape app, providing features researchers to perform pathway- visualization by leveraging manually curated Reactome highly reliable functional interaction network. To facilitate...
<ns4:p>Pathway- and network-based approaches project seemingly unrelated genes onto the context of pathways networks, enhancing analysis power that cannot be achieved via gene-based approaches. Pathway network are routinely applied in large-scale data for cancer other complicated diseases. ReactomeFIViz is a Cytoscape app, providing features researchers to perform pathway- visualization by leveraging manually curated Reactome highly reliable functional interaction network. To facilitate...