John Michael C. Egana

ORCID: 0000-0003-0072-3113
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About
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Research Areas
  • SARS-CoV-2 and COVID-19 Research
  • Bacillus and Francisella bacterial research
  • CRISPR and Genetic Engineering
  • Bacteriophages and microbial interactions

University of the Philippines System
2023

Abstract We report the sequencing and analysis of 60 XBC 114 XBC.1 SARS-CoV-2 lineages detected in Philippines from August to September 2022, which are regarded as recombinant BA.2 Omicron B.1.617.2 Delta (21I Clade) variants. The sequences described here place country with earliest highest number cases within included period. Majority were sampled adjacent Davao Soccskargen regions southern Philippines, but have also been observed at lower proportions other country. Time-scaled phylogenetic...

10.1101/2023.04.12.534029 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-04-12

Abstract The Omicron severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variant led to a dramatic global epidemic wave following detection in South Africa November 2021. BA.1 lineage was dominant and responsible for most SARS-CoV-2 outbreaks countries around the world during December 2021–January 2022, while other lineages, including BA.2, accounted minority of isolates. Here, we describe Philippines by analysing genomic data. Our results identify presence both BA.2 lineages 2021,...

10.1093/ve/veac078 article EN cc-by Virus Evolution 2022-07-01
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