Boni A. Afouda

ORCID: 0000-0003-0724-5716
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About
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Research Areas
  • Congenital heart defects research
  • Genetics and Neurodevelopmental Disorders
  • RNA modifications and cancer
  • Developmental Biology and Gene Regulation
  • Wnt/β-catenin signaling in development and cancer
  • RNA and protein synthesis mechanisms
  • Epigenetics and DNA Methylation
  • Tissue Engineering and Regenerative Medicine
  • Animal Genetics and Reproduction
  • CRISPR and Genetic Engineering
  • Zebrafish Biomedical Research Applications
  • Renal and related cancers
  • Pluripotent Stem Cells Research
  • Cardiac Fibrosis and Remodeling
  • Chromosomal and Genetic Variations
  • Muscle Physiology and Disorders
  • Cancer-related gene regulation
  • Congenital Heart Disease Studies
  • T-cell and B-cell Immunology

University of Aberdeen
2009-2022

Institute of Medical Sciences
2022

University of Edinburgh
2012

MRC Centre for Regenerative Medicine
2012

Queen's Medical Centre
2005

University of Nottingham
2005

Cardiogenesis is inhibited by canonical Wnt/beta-catenin signalling and stimulated non-canonical Wnt11/JNK signalling, but how these two pathways crosstalk currently unknown. Here, we show that restricts cardiogenesis via inhibition of GATA gene expression, as experimentally reinstating function overrides beta-catenin-mediated restores cardiogenesis. Furthermore, transcription factors in turn directly regulate Wnt11 required to a significant degree for mediating the cardiogenesis-promoting...

10.1242/dev.026443 article EN Development 2008-08-21

The individual contributions of the three vertebrate GATA factors to endoderm formation have been unclear. Here we detail early expression GATA4, 5 and 6 in presumptive Xenopus embryos their induction endodermal markers ectoderm. Induction HNF3beta by all was abolished when protein synthesis inhibited, showing that these inductions are indirect. In contrast, whereas Sox17alpha HNF1beta GATA4 substantially reduced GATA6 minimally affected, suggesting is a direct activator genes. induced same...

10.1242/dev.01647 article EN Development 2005-01-20

Abstract A functioning heart muscle is required continuously throughout life. During embryonic development the tissue differentiates from mesoderm that has heart‐forming potential. Heart‐forming potential in regulated by pro‐cardiogenic transcription factors, such as members of GATA and NK‐2 factor families. Subsequent differentiation involves expression cytoskeletal proteins, including myosins troponins. Different Wnt signalling pathways have various functions development. So‐called...

10.1111/j.1469-7580.2009.01171.x article EN Journal of Anatomy 2009-12-16

Secreted molecules called morphogens govern tissue patterning in a concentration-dependent manner. However, it is still unclear how reproducible can be achieved with diffusing molecules, especially when that concerns differentiation of thin tissues. Wnt morphogen organizes cardiac development. Wnt6 patterns cardiogenic mesoderm to induce tissue, the pericardium, Xenopus. In this study, we revealed receptor, frizzled-7, expressed Wnt-dependent With combination experiments and mathematical...

10.7554/elife.73818 article EN cc-by eLife 2022-07-26

Abstract GATA factors and Wnt signals are key regulators of vertebrate cardiogenesis, but specific roles for individual how they interact with signaling remain unknown. We use loss function overexpression approaches to elucidate these molecules regulate early cardiogenesis in Xenopus . In order minimize indirect effects due abnormal embryogenesis, we pluripotent embryonic tissues as cardiogenic assays. confirm central GATA4, 5, 6 also discover different requirements. show that GATA4 or both...

10.1002/dvdy.22570 article EN Developmental Dynamics 2011-02-08

The transcription factors GATA4, GATA5 and GATA6 are important regulators of heart muscle differentiation (cardiomyogenesis), which function in a partially redundant manner. We identified genes specifically regulated by individual cardiogenic GATA genome-wide transcriptomics analysis. gata4 particularly interesting because GATA4 is able to induce beating cardiomyocytes Xenopus mammalian systems. Among the gata4-regulated transcripts we two SoxF family members, sox7 sox18. Experimental...

10.1016/j.ydbio.2017.11.017 article EN cc-by Developmental Biology 2017-12-08

Although Wnt/β-catenin signaling is generally conserved and well understood, the regulatory mechanisms controlling context-specific direct Wnt target gene expression in development disease are still unclear. The onset of zygotic transcription early embryogenesis represents an ideal, accessible experimental system to investigate regulation. We combine transcriptomics using RNA-seq with genome-wide β-catenin association ChIP-seq identify stage-specific genes. propose coherent feedforward...

10.1016/j.isci.2020.101314 article EN cc-by iScience 2020-06-25

10.1007/978-1-61779-992-1_29 article EN Methods in molecular biology 2012-01-01

The transcription factors GATA4, GATA5 and GATA6 play important roles in heart muscle differentiation. data presented this article are related to the research entitled "Genome-wide transcriptomics analysis identifies sox7 sox18 as specifically regulated by gata4 cardiomyogenesis" (Afouda et al., 2017) [1]. present study genes these individual cardiogenic GATA using genome-wide analysis. We have that each of them, well those either them. gene ontology terms (GO) associated with differentially...

10.1016/j.dib.2018.01.005 article EN cc-by Data in Brief 2018-01-17

We agree that the discrepancy between our results on Xenopus cardiac MHCα expression reported in Afouda et al. (Afouda al., 2008) and those of Samuel Latinkic based their experiments (Samuel Latinkic, 2010) might indeed be due to technical details. Our analysis is full-length sequence [accession no. AY913767 (Garriock 2005)], using PCR primers developed by Professor Asashima's research group (see Ariizumi 2003): forward, 5′-GCCAACTCAAACCTCTCCAAGTTCCG-3′ reverse,...

10.1242/dev.046334 article EN Development 2009-12-18

Inhibition of Wnt/β‐catenin signalling is required in vertebrate embryos for initiation heart development. The identity the endogenous Wnt ligand that needs to be inhibited has so far remained unclear. We identified Wnt6 expressed close forming tissue Xenopus. Endogenous expression during organogenesis prevent differentiation an abnormally large muscle. Even at these remarkably late stages, Wnt6/β‐catenin regulates pro‐cardiogenic transcription factor network rather than muscle directly. Our...

10.1096/fasebj.24.1_supplement.177.3 article EN The FASEB Journal 2010-04-01

Abstract Secreted molecules called morphogens govern tissue patterning in a concentration-dependent manner. However, it is still unclear how reproducible can be achieved with diffusing molecules, especially when differentiation of thin region. Wnt morphogen that organizes cardiac development; Wnt6 patterns the cardiogenic mesoderm to induce pericardium Xenopus . It is, however, pattern such tissue. In this study, we reveal receptor, frizzled7 , expressed Wnt-dependent manner prospective...

10.1101/2021.09.12.458649 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2021-09-12
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