James S. Griffin

ORCID: 0000-0003-2728-5790
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About
Contact & Profiles
Research Areas
  • Microbial Community Ecology and Physiology
  • Wastewater Treatment and Nitrogen Removal
  • Pharmaceutical and Antibiotic Environmental Impacts
  • Microbial Fuel Cells and Bioremediation
  • Gut microbiota and health
  • Ammonia Synthesis and Nitrogen Reduction
  • Environmental DNA in Biodiversity Studies
  • Antibiotic Resistance in Bacteria
  • Underwater Acoustics Research
  • Building Energy and Comfort Optimization
  • Bacterial biofilms and quorum sensing
  • Marine and coastal ecosystems
  • Algal biology and biofuel production
  • Network Security and Intrusion Detection
  • Electrocatalysts for Energy Conversion
  • Aquatic Ecosystems and Phytoplankton Dynamics
  • Vibration and Dynamic Analysis
  • Advanced oxidation water treatment
  • 3D Printing in Biomedical Research
  • CRISPR and Genetic Engineering
  • Constructed Wetlands for Wastewater Treatment
  • RNA and protein synthesis mechanisms
  • RNA regulation and disease
  • Underwater Vehicles and Communication Systems
  • Cell Image Analysis Techniques

Northwestern University
2016-2023

Wright-Patterson Air Force Base
2014

U.S. Air Force Institute of Technology
2014

Naval Undersea Warfare Center
2002

Linwei Wu Daliang Ning Bing Zhang Yong Li Ping Zhang and 95 more Xiaoyu Shan Qiuting Zhang Mathew R. Brown Zhenxin Li Joy D. Van Nostrand Fangqiong Ling Naijia Xiao Ya Zhang Julia Vierheilig George Wells Yunfeng Yang Ye Deng Qichao Tu Aijie Wang Dany Acevedo M. Agulló-Barceló Pedro J. J. Alvarez Lisa Alvarez‐Cohen Gary L. Andersen Juliana Calábria de Araújo Kevin F. Boehnke Philip L. Bond Charles Bott Patricia Bovio-Winkler Rebecca K. Brewster Faizal Bux Angela Cabezas Léa Cabrol Si Chen Craig S. Criddle Ye Deng Claudia Etchebehere Amanda Ford Dominic Frigon Janeth Sanabria James S. Griffin April Z. Gu Moshe Habagil Lauren Hale Steven D. Hardeman Marc Harmon Harald Horn Zhiqiang Hu Shameem Jauffur David R. Johnson Jürg Keller Alexander Keucken Sheena Kumari Cíntia Dutra Leal Laura Lebrun Jangho Lee Min-Joo Lee Zarraz May Ping Lee Yong Li Zhenxin Li Mengyan Li Xu Li Fangqiong Ling Yu Liu Richard G. Luthy Lêda C. Mendonça-Hagler Francisca Gleire Rodriguez de Menezes A. J. Meyers Amin Mohebbi Per Halkjær Nielsen Daliang Ning Adrian Oehmen Andrew Palmer Prathap Parameswaran Joonhong Park Deborah Patsch Valéria Reginatto Francis L. de los Reyes Bruce E. Rittmann Adalberto Noyola Simona Rossetti Xiaoyu Shan Jatinder Sidhu William T. Sloan Kylie Smith Oscarina Viana de Sousa David A. Stahl Kyle Stephens Renmao Tian James M. Tiedje Nicholas B. Tooker Qichao Tu Joy D. Van Nostrand Daniel de los Cobos‐Vasconcelos Julia Vierheilig Michael Wagner Steven A. Wakelin Aijie Wang Bei Wang Joseph E. Weaver

10.1038/s41564-019-0426-5 article EN Nature Microbiology 2019-05-13

Coupled aerobic–anoxic nitrous decomposition operation (CANDO) is a promising emerging bioprocess for wastewater treatment that enables direct energy recovery from nitrogen (N) in three steps: (1) ammonium oxidation to nitrite; (2) denitrification of nitrite oxide (N2O); and (3) N2O conversion N2 with generation. However, CANDO does not currently target phosphorus (P) removal. Here, we demonstrate denitrifying polyphosphate-accumulating organism (PAO) enrichment cultures are capable...

10.1021/acs.est.6b04896 article EN Environmental Science & Technology 2017-02-17

Wastewater treatment plants (WWTPs) are known to harbor antibiotic resistance genes (ARGs) that disseminated into the environment via effluent. However, few studies have compared abundance, mobilization and selective pressures for ARGs in WWTPs as a function of variations secondary bioprocesses. We used shotgun metagenomics provide comprehensive analysis ARG composition, relationship mobile genetic elements co-occurrences with production (APGs) throughout two full-scale municipal WWTPs, one...

10.1093/femsec/fiy041 article EN FEMS Microbiology Ecology 2018-03-09

Current gene editing approaches in eukaryotic cells are limited to single base edits or small DNA insertions and deletions, remain encumbered by unintended permanent effects significant challenges the delivery of large cargo. Here we describe Splice Editing, a generalizable platform correct transcripts situ programmable insertion replacement RNA segments. By combining CRISPR-mediated targeting with endogenous cellular RNA-splicing machinery, Editing enables efficient, precise, large-scale...

10.1101/2023.08.18.553620 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-08-18

Intensively managed land increases the rate of nutrient and particle transport within a basin, but impact these changes on microbial community assembly patterns at basin scale is not yet understood. The objective this study was to investigate how landscape connectivity dispersal impacts diversity in an agricultural-dominated watershed. We characterized soil, sediment water communities along Upper Sangamon River Illinois—a 3600 km2 watershed strongly influenced by human activity, especially...

10.1093/femsec/fix120 article EN FEMS Microbiology Ecology 2017-09-18

Abstract Morphological parameters are commonly used to predict transport and metabolic kinetics in biofilms. Yet, quantification of biofilm morphology remains challenging because imaging technology limitations lack robust analytical approaches. We present a novel set image analysis techniques estimate internal porosity, pore size distributions, network connectivity depth 1 mm at resolution 10 µm exhibiting both heterotrophic nitrifying activities. Optical coherence tomography (OCT) scans...

10.1002/bit.26729 article EN Biotechnology and Bioengineering 2018-05-19

In this work, we demonstrate a combined bioelectrochemical and inorganic catalytic system for resource recovery from wastewater. We designed microbial peroxide producing cell (MPPC) hydrogen (H2O2) production used bioelectrochemically derived H2O2 as green oxidant sulfoxidation, an industrial reaction chemical synthesis oxidative desulfurization of transportation fuels. operated MPPC equipped with gas diffusion electrode cathode six months, achieving peak current density above 1.4 mA cm–2...

10.1021/acssuschemeng.7b04641 article EN ACS Sustainable Chemistry & Engineering 2018-04-27

Abstract Attached growth bioprocesses that use biofilms to remove organic matter or nutrients from wastewater are known harbor antibiotic resistance genes (ARGs). Biofilms in these processes spatially heterogeneous, but little is about depth stratification of ARGs complex, mixed culture biofilms. To address this knowledge gap, we used an experimental approach combining cryosectioning and quantitative polymerase chain reaction quantify the spatial distribution three ( sul1, ermB, qnrS ) class...

10.1002/bit.26887 article EN Biotechnology and Bioengineering 2018-12-04

While the impacts of soil moisture on microbiome diversity and composition are well characterized, influence hydrological regime has been overlooked. As precipitation patterns altered by climate change, understanding impact hydrology community structure function is critical. In this work, water level was continuously monitored for over a year in Midwestern prairie-wetland at 10 cm depth increments up to 120 locations. We analyzed edaphic factors cores collected from unique spatially...

10.1093/femsec/fiz163 article EN FEMS Microbiology Ecology 2019-10-16

Asset management is a systems approach to managing an organization's portfolio of real property assets. Although range activities exist help manage these assets, understanding facility energy consumption critical component from life-cycle decision-making perspective. Since national concern for most countries, this has resulted in various initiatives regarding conservation measures. To better understand the factors affecting facilities, and meteorological data covering 22 years were collected...

10.3846/1648715x.2014.941042 article EN cc-by International Journal of Strategic Property Management 2014-09-18

Abstract Introducing hydrogen into the existing natural gas pipeline network has been proposed as a way of decreasing greenhouse (GHG) effects from combustion gas. However, is known to degrade strength many alloys through embrittlement (HE). Therefore, it important carefully define maximum allowable pressure concentration for each alloy avoid detrimental material. In this study, testing was carried out evaluate susceptibility selected via controlled exposure methane blended with different...

10.5006/c2024-20893 article EN conference 2024-03-03

Microalgae accumulate lipids in response to nutrient deprivation, and these are a biodiesel fuel stock. Algal cultivation with secondary wastewater effluent is one proposed platform for biofuel production, which provides nutrients algae while further polishing effluent. bioreactors were tested using feast-famine feeding regiment simulated evaluate the effects on lipid content algal community structure. polycultures inoculated into reactors fed synthetic at pH 7.5 9 operated under (N, P, BOD)...

10.1371/journal.pone.0279943 article EN cc-by PLoS ONE 2023-01-04

For an acoustic transducer mounted on the exterior of a submerged hull structure, effect dynamic mobility upon directivity patterns is subject considerable interest to array design engineers. Cylindrical geometry, mounting point impedance, and structural dispersion are possible significant factors in beam pattern distortion. This analytical study utilizes fundamental fluid/structure interaction model cylindrical shells investigate role vibrations induced by reactive excitation element. It...

10.1121/1.388045 article EN The Journal of the Acoustical Society of America 1982-08-01

Acoustic testing was conducted to characterize the self-noise state of Odyssey II class autonomous underwater vehicles (AUVs). The tests were at Naval Undersea Warfare Center Division Newport with additional personnel from Massachusetts Institute Technology and Ocean Acoustical Services Instrumentation Systems. Measurements sound pressure structural acceleration made various points on interior exterior a vehicle while it exercised actuators in manner representative actual operating...

10.1109/oceans.1997.634453 article EN 2002-11-22

Abstract Recent findings show that a subset of bacteria affiliated with Nitrospira , genus known for its importance in nitrite oxidation biological nutrient removal applications, are capable co mplete amm onia ox idation (comammox) to nitrate. Early reports suggested they were absent or present low abundance most activated sludge processes, and thus likely functionally irrelevant. Here we the accumulation comammox nitrifying sequencing batch reactor operated at dissolved oxygen (DO)...

10.1101/504704 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2018-12-21
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