Deniz Şahin

ORCID: 0000-0003-3822-0319
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About
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Research Areas
  • Synthesis and biological activity
  • Membrane Separation Technologies
  • Extraction and Separation Processes
  • Synthesis and Biological Evaluation
  • Algal biology and biofuel production
  • Crystallization and Solubility Studies
  • Diatoms and Algae Research
  • Analytical chemistry methods development
  • X-ray Diffraction in Crystallography
  • Monoclonal and Polyclonal Antibodies Research
  • Advanced Proteomics Techniques and Applications
  • Microbial Metabolic Engineering and Bioproduction
  • Glycosylation and Glycoproteins Research
  • Electrochemical Analysis and Applications
  • Membrane-based Ion Separation Techniques
  • Fatty Acid Research and Health
  • Synthesis and Characterization of Heterocyclic Compounds
  • Advanced biosensing and bioanalysis techniques
  • Agricultural and Rural Development Research
  • Sulfur-Based Synthesis Techniques
  • Click Chemistry and Applications
  • Analytical Chemistry and Chromatography
  • Recycling and Waste Management Techniques
  • European Monetary and Fiscal Policies
  • Cell Image Analysis Techniques

Istanbul Technical University
2006-2021

Gazi University
2015-2021

Technische Universität Berlin
2021

Sivas Cumhuriyet Üniversitesi
2021

Karadeniz Technical University
2008-2015

University of Washington
2006-2008

Abstract Motivation: The discovery of solid-binding peptide sequences is accelerating along with their practical applications in biotechnology and materials sciences. A better understanding the relationships between binding affinities or specificities will enable further design novel peptides selected properties interest both engineering medicine. Results: bioinformatics approach was developed to classify by vivo techniques according inorganic properties. Our performs all-against-all...

10.1093/bioinformatics/btm436 article EN Bioinformatics 2007-09-17

Some novel 4,5-disubstituted-2,4-dihydro-3H-1,2,4-triazol-3-one (3, 6, 8, 9) derivatives and or 3-(4-methylphenyl)[1,2,4]triazolo[3,4-b][1,3]benzoxazole (5) were synthesized from the reaction of various ester ethoxycarbonylhydrazones (1a-e) with several primary amines. The synthesis 4-amino-5-(4-chlorophenyl)-2-[(5-mercapto-1,3,4-oxadiazol-2-yl)methyl]-2,4-dihydro-3H-1,2,4-triazol-3-one (13) was performed starting 4-Amino-5-(4-chlorophenyl)-2,4-dihydro-3H-1,2,4-triazol-3-one (2) by four...

10.3390/molecules15042427 article EN cc-by Molecules 2010-04-08

Schizochytrium species is one of the most studied microalgae for production docosahexaenoic acid (DHA) which an omega-3 fatty with positive effects human health. However, high cost and low yield in phase makes optimization cultivation process inevitable. We focus on DHA using sp. different media supplements; glucose, fructose glycerol as carbon variants, proteose peptone tryptone nitrogen variants. The highest biomass (5.61 g/L) total (1.74 were obtained medium was used alternative source...

10.1186/s13568-018-0540-4 article EN cc-by AMB Express 2018-01-24

Binding kinetics of platinum-, silica-, and gold-binding peptides were investigated using a modified surface plasmon resonance spectroscopy (SPR). Platinum binding septa-peptides, quartz-binding dodecapeptides, 14-aa originally selected phage or cell display libraries the mineral pure forms these materials. All synthesized singly to investigate their assess quantitatively specific affinity each its material selection. The also postselection engineered contain multiple copies same original...

10.1021/bm8009895 article EN Biomacromolecules 2008-12-12

A simple, sensitive, facile and low cost methodology, combined with flame atomic absorption spectrometry (FAAS), was employed to evaluate the selective separation preconcentration of Pd(II) ions in environmental samples by using a triazole derivative as an organic coprecipitating agent without carrier element. The developed method systematically investigated different set experimental parameters that influence quantitative recovery ions. accuracy tested analyzing certified reference material...

10.4314/bcse.v29i1.1 article EN cc-by Bulletin of the Chemical Society of Ethiopia 2015-01-18

A new solid phase extraction (SPE) method has been developed for the selective separation and preconcentration of Cu (II) ions in food water samples prior to its flame atomic absorption spectrometry determination. The is based on adsorption Cu(II) - 2-{[4-Amino-3-(4-methylphenyl-5-oxo-4,5-dihydro-1H-1,2,4-triazol-1-yl]acetyl}-N-phenyl hydrazinecarbothioamide complex Amberlite XAD-8 resin. metal retained resin was eluted with 7.5 mL 2.0 mol L-1 HCl acetone. optimum conditions SPE were...

10.1590/s0100-40422013000600016 article EN cc-by-nc Química Nova 2013-01-01

Background: Gastric cancer is the second most common among malign types. Inefficiency of traditional techniques both in diagnosis and therapy disease makes development alternative novel indispensable. As an to methods, tumor specific targeting small peptides can be used increase efficiency treatment reduce side effects related techniques. The aim this study screening identification individual specifically targeted human gastric cells using a phage-displayed peptide library designing...

10.22034/apjcp.2018.19.4.927 article EN PubMed 2018-04-25

Optimum conditions for the removal of Cu(II) ions from both single-component and Cd(II) containing solutions by ligand-modified micellar-enhanced ultrafiltration (LM-MEUF) were determined. Complexation behaviors 20 ligands with investigated in micellar medium SDS at different pH values to determine which could provide selective separation. In this respect, most effective ligand was found be 2,4,6-tri(2-pyridyl)-1,3,5-triazine (TPTZ). presence 6.6 × 10−8 mol L−1 TPTZ feed solution,...

10.1080/19443994.2015.1042059 article EN cc-by-nc-nd Desalination and Water Treatment 2015-05-13

High throughput screening systems are automated labs for the analysis of many biochemical substances in drug discovery and virus detection process. This paper was motivated by problem automating testing viruses new drugs using high systems. The emergence severe acute respiratory syndrome coronavirus 2 (SARSCoV- 2) at turn 2019-2020 presented extraordinary challenges to public health. Existing approaches test do not use optimal schedules efficient.The scheduling activities performed various...

10.2174/1386207324666210811124856 article EN Combinatorial Chemistry & High Throughput Screening 2021-08-12

Abstract Ligand-modified micellar-enhanced ultrafiltration (LM-MEUF) is a membrane technique based on separation process which can be used for removal of target metals from an aqueous solution. This method involves adding both metal complexing ligand and surfactant molecule to the solution under conditions where most molecules are present as micelles. attached surface micelles by solubilization forms complexes with ion. The then treated through has smaller pore sizes than those complexes....

10.2478/pjct-2018-0026 article EN cc-by Polish Journal of Chemical Technology 2018-06-01

Background: Osteosarcoma is a malignant tumor type that starts in bone and occurs most frequently adolescents. Traditional techniques are insufficient, especially for metastatic ones. As alternative treatment techniques, natural products worthy of examining due to being safe innovative. Essential polyunsaturated fatty acids, mainly omega-3 omega-6 have various positive effects on human health growth. In addition, some PUFAs show anti-cancer activity by inducing apoptosis, specifically cancer...

10.2174/1389201021666200928101029 article EN Current Pharmaceutical Biotechnology 2020-09-29

Bilgi ve iletişim teknolojilerinde olağanüstü gelişim kamusal etkinliklerde de yeni teknoloji kullanımını beraberinde getirmiştir. Gelir idareleri diğer kamu gibi bu sürece dâhil olmuştur. Türk İdaresi 90’lı yılların başından itibaren hayata geçirdiği bir dizi otomasyon projesi ile uyum yönetim maliyetlerini minimize etmek üzere bilgisayar teknolojilerini birer araç olarak kullanmayı, kurumun çalışmalarında etkinlik verimliliğini arttırmayı sağladığı verilerle güçlü karar destek bilgi...

10.5505/iuyd.2013.98608 article TR İnternet uygulamaları ve yönetimi/internet uygulamalarý ve yönetimi 2013-01-01

Optimum conditions for removal of Cu(II) ions from both single-component and Cd(II)-containing solutions by ligand-modified micellar-enhanced ultrafiltration (LM-MEUF) in the presence cetyltrimethylammonium bromide (CTAB) triton X-100 (TX100) micelles were determined.TX100 was not found to be effective separation LM-MEUF.The most ligand CTAB micellar media, out 20 ligands, 2,4,6-tri(2-pyridyl)-1,3,5-triazine (TPTZ) solutions.99.99% 5.0 × 10 -4 mol L -1 could provided -3 1.0 TPTZ.Complete...

10.5004/dwt.2018.22317 article EN cc-by-nc-nd Desalination and Water Treatment 2018-06-01
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