Amélie C. M. Gaudin

ORCID: 0000-0003-4007-9991
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About
Contact & Profiles
Research Areas
  • Soil Carbon and Nitrogen Dynamics
  • Agronomic Practices and Intercropping Systems
  • Plant nutrient uptake and metabolism
  • Legume Nitrogen Fixing Symbiosis
  • Climate change impacts on agriculture
  • Irrigation Practices and Water Management
  • Agriculture Sustainability and Environmental Impact
  • Crop Yield and Soil Fertility
  • Rice Cultivation and Yield Improvement
  • Plant Water Relations and Carbon Dynamics
  • Plant-Microbe Interactions and Immunity
  • Horticultural and Viticultural Research
  • Agroforestry and silvopastoral systems
  • Mycorrhizal Fungi and Plant Interactions
  • Plant responses to elevated CO2
  • Agricultural Innovations and Practices
  • Plant and animal studies
  • Nematode management and characterization studies
  • Soil erosion and sediment transport
  • Rangeland Management and Livestock Ecology
  • Gut microbiota and health
  • Organic Food and Agriculture
  • Agricultural risk and resilience
  • Potato Plant Research
  • Plant Molecular Biology Research

University of California, Davis
2016-2025

International Rice Research Institute
2012-2024

Plant (United States)
2018-2020

Lawrence Berkeley National Laboratory
2018-2019

Planta
2019

University of Guelph
2011-2015

International Potato Center
2006-2008

A grand challenge facing humanity is how to produce food for a growing population in the face of changing climate and environmental degradation. Although empirical evidence remains sparse, management strategies that increase sustainability, such as increasing agroecosystem diversity through crop rotations, may also resilience weather extremes without sacrificing yields. We used multilevel regression analyses long-term yield datasets across continental precipitation gradient assess temporal...

10.1016/j.oneear.2020.02.007 article EN cc-by One Earth 2020-03-01

Cropping sequence diversification provides a systems approach to reduce yield variations and improve resilience multiple environmental stresses. Yield advantages of more diverse crop rotations their synergistic effects with reduced tillage are well documented, but few studies have quantified the impact these management practices on yields stability when soil moisture is limiting or in excess. Using weather data obtained from 31-year long term rotation trial Ontario, we tested whether...

10.1371/journal.pone.0113261 article EN cc-by PLoS ONE 2015-02-06

Abstract Background Rhizosphere microbial communities are key regulators of plant performance, yet few studies have assessed the impact different management approaches on rhizosphere microbiomes major crops. shaped by interactions between agricultural and host selection processes, but often consider these factors individually rather than in combination. We tested impacts (M) effects (R) community structure co-occurrence networks maize roots collected from long-term conventionally organically...

10.1186/s40168-019-0756-9 article EN cc-by Microbiome 2019-11-07

Abstract Increasing soil organic carbon (SOC) via inputs is a key strategy for increasing long‐term C storage and improving the climate change mitigation adaptation potential of agricultural systems. A trial in California's Mediterranean revealed impacts management on SOC maize‐tomato wheat–fallow cropping was measured at initiation experiment year 19, five depth increments down to 2 m, taking into account changes bulk density. Across entire m profile, systems did not with addition N...

10.1111/gcb.14762 article EN Global Change Biology 2019-07-14
Georgios A. Pavlopoulos Fotis A. Baltoumas Sirui Liu Oğuz Selvitopi Antônio Pedro Camargo and 95 more Stephen Nayfach Ariful Azad Simon Roux Lee Call Natalia Ivanova I. Min Chen David Páez-Espino Evangelos Karatzas Silvia G. Acinas Nathan A. Ahlgren Graeme T. Attwood Petr Baldrián Timothy D. Berry Jennifer Bhatnagar Devaki Bhaya Kay D. Bidle Jeffrey L. Blanchard Eric S. Boyd Jennifer L. Bowen Jeff S. Bowman Susan H. Brawley Eoin Brodie Andreas Brune Donald A. Bryant Alison Buchan Hinsby Cadillo‐Quiroz Barbara J. Campbell Ricardo Cavicchioli Peter F. Chuckran Maureen L. Coleman Sean A. Crowe Daniel R. Colman Cameron R. Currie Jeff Dangl Nathalie Delherbe Vincent J. Denef Paul Dijkstra Daniel D. Distel Emiley A. Eloe‐Fadrosh Kirsten M. Fisher Christopher Francis Aaron Garoutte Amélie C. M. Gaudin Lena Gerwick Filipa Godoy‐Vitorino Peter Guerra Jiarong Guo Mussie Y. Habteselassie Steven Hallam Roland Hatzenpichler Ute Hentschel Matthias Hess Ann M. Hirsch Laura Hug Jenni Hultman Dana E. Hunt Marcel Huntemann William P. Inskeep Timothy Y. James Janet Jansson Eric R. Johnston Marina Kalyuzhnaya Charlene N. Kelly Robert M. Kelly Jonathan L. Klassen Klaus Nüsslein Joel E. Kostka Steven E. Lindow Erik A. Lilleskov Mackenzie M. Lynes Rachel Mackelprang Francis Martin Olivia U. Mason R. Michael L. McKay Katherine D. McMahon David A. Mead Mónica Medina Laura K. Meredith Thomas Möck William W. Mohn Mary Ann Moran Alison E. Murray Josh D. Neufeld Rebecca B. Neumann Jeanette M. Norton Laila P. Partida‐Martínez Nicole Pietrasiak Dale A. Pelletier T. B. K. Reddy Brandi Kiel Reese Nicholas J. Reichart Rebecca A. Reiss Mak A. Saito Daniel P. Schachtman R. Seshadri

Metagenomes encode an enormous diversity of proteins, reflecting a multiplicity functions and activities

10.1038/s41586-023-06583-7 article EN cc-by Nature 2023-10-11

Abstract Diversifying agriculture by rotating a greater number of crop species in sequence is promising practice to reduce negative impacts production on the environment and maintain yields. However, it unclear what extent cereal yields change with rotation diversity external nitrogen fertilization level over time, which functional groups crops provide most yield benefit. Here, using grain data small cereals maize from 32 long-term (10–63 years) experiments across Europe North America, we...

10.1038/s43247-023-00746-0 article EN cc-by Communications Earth & Environment 2023-03-23

Continuously flooded rice systems are a major contributor to global production and food security. Allowing the soil dry periodically during growing season (such as with alternate wetting drying irrigation - AWD) has been shown decrease methane emissions, water usage, heavy metal accumulation in grain. However, effects of AWD on yields variable not well understood. A two-year study was established quantify impacts range treatments differing severity (degree between flooding events) yield (as...

10.1016/j.fcr.2018.02.026 article EN cc-by-nc-nd Field Crops Research 2018-04-04

Abstract Maize domestication and breeding have resulted in drastic well documented changes aboveground traits, but belowground effects on root system functioning rhizosphere microbial communities remain poorly understood, despite their critical importance for nutrient water acquisition. We investigated the community composition structure of ten Zea mays accessions along an evolutionary transect (two teosinte, three inbred maize lines, five modern hybrids) grown depleted soil from a low input...

10.1038/s41598-019-52148-y article EN cc-by Scientific Reports 2019-10-30

Abstract Climate change adaptation requires building agricultural system resilience to warmer, drier climates. Increasing temporal plant diversity through crop rotation diversification increases yields of some crops under drought, but its potential enhance drought resistance and the underlying mechanisms remain unclear. We conducted a manipulation experiment using rainout shelters embedded within 36-year no-till in temperate climate measured suite soil developmental eco-physiological traits...

10.1088/1748-9326/ac1468 article EN cc-by Environmental Research Letters 2021-07-14
Brayon J. Fremin Ami S. Bhatt Nikos C. Kyrpides Aditi Sengupta Alexander Sczyrba and 95 more Aline Maria da Silva Alison Buchan Amélie C. M. Gaudin Andreas Brune Ann M. Hirsch Anthony P. Neumann Ashley Shade Axel Visel Barbara J. Campbell Brett J. Baker Brian P. Hedlund Byron C. Crump Cameron R. Currie Charlene N. Kelly Chris Craft Christina Hazard Christopher Francis Christopher W. Schadt Colin Averill Courtney Mobilian D. H. Buckley Dana E. Hunt Daniel R. Noguera David A. C. Beck David L. Valentine David A. Walsh D. Y. Sumner Despoina S. Lymperopoulou Devaki Bhaya Donald A. Bryant Elise S. Morrison Eoin Brodie Erica B. Young Erik A. Lilleskov Eva Högfors‐Rönnholm Feng Chen Frank J. Stewart Graeme W. Nicol Hanno Teeling Harry R. Beller Hebe M. Dionisi Hui-Ling Liao J. Michael Beman James Stegen James M. Tiedje Janet Jansson Jean S. VanderGheynst Jeanette M. Norton Jeff Dangl Jeffrey L. Blanchard Jennifer L. Bowen Jennifer L. Macalady Jennifer Pett‐Ridge Jeremy N. Rich Jérôme P. Payet John Gladden Jonathan D. Raff Jonathan L. Klassen Jonathan Tarn Josh D. Neufeld Kelly Gravuer Kirsten Hofmockel Ko‐Hsuan Chen Konstantinos T. Konstantinidis Kristen M. DeAngelis Laila P. Partida‐Martínez Laura Meredith Ludmila Chistoserdova Mary Ann Moran Matthew J. Scarborough Matthew Schrenk Matthew B. Sullivan Maude M. David Michelle O’Malley Mónica Medina Mussie Y. Habteselassie Nicholas Ward Nicole Pietrasiak Olivia U. Mason Patrick O. Sorensen Paulina Estrada‐de los Santos Petr Baldrián R. Michael L. McKay Rachel L. Simister Ramūnas Stepanauskas Rebecca B. Neumann Rex R. Malmstrom Ricardo Cavicchioli Robert M. Kelly Roland Hatzenpichler Roman Stocker Rose Ann Cattolico Ryan Ziels Rytas Vilgalys Sara E. Blumer‐Schuette

Small genes (<150 nucleotides) have been systematically overlooked in phage genomes. We employ a large-scale comparative genomics approach to predict >40,000 small-gene families ∼2.3 million genome contigs. find that small genomes are approximately 3-fold more prevalent than host prokaryotic Our enriches for translated microbiomes, suggesting the identified coding. More 9,000 encode potentially secreted or transmembrane proteins, 5,000 predicted anti-CRISPR and 500 antimicrobial proteins. By...

10.1016/j.celrep.2022.110984 article EN cc-by Cell Reports 2022-06-01

Abstract Diversified crop rotations have been suggested to reduce grain yield losses from the adverse climatic conditions increasingly common under climate change. Nevertheless, potential for change adaptation of different rotational diversity (CRD) remains undetermined. We quantified how affect small and maize yields CRDs in 32 long‐term (10–63 years) field experiments across Europe North America. Species‐diverse functionally rich more than compensated anomalous warm conditions, long dry...

10.1111/gcb.17298 article EN cc-by Global Change Biology 2024-05-01

There is interest in discovering root traits associated with acclimation to nutrient stress. Large systems, such as adult maize, have proven difficult be phenotyped comprehensively and over time, causing target missed. These challenges were overcome here using aeroponics, a system where roots grow the air misted solution. Applying an agriculturally relevant degree of low nitrogen (LN) stress, 30-day-old plants responded by increasing lengths individual crown (CRs) 63%, compensated 40%...

10.1111/j.1365-3040.2011.02409.x article EN Plant Cell & Environment 2011-08-16

Growing multiple crops in rotation can increase the sustainability of agricultural systems and reduce risks from increasingly adverse weather. However, widespread adoption diverse rotations is limited by economic uncertainty, lack incentives, information about long-term outcomes. Here, we combined 36,000 yield observations 20 North American cropping experiments (434 site-years) to assess how greater crop diversity impacts productivity complete their component under varying growing...

10.1016/j.oneear.2024.07.008 article EN cc-by One Earth 2024-08-06
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