Amit Lakhanpal

ORCID: 0000-0003-4171-4790
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About
Contact & Profiles
Research Areas
  • Systemic Lupus Erythematosus Research
  • Rheumatoid Arthritis Research and Therapies
  • T-cell and B-cell Immunology
  • COVID-19 Clinical Research Studies
  • Chronic Lymphocytic Leukemia Research
  • Single-cell and spatial transcriptomics
  • Immune Cell Function and Interaction
  • Long-Term Effects of COVID-19
  • Spectroscopy and Quantum Chemical Studies
  • Renal Diseases and Glomerulopathies
  • Lymphoma Diagnosis and Treatment
  • Cytokine Signaling Pathways and Interactions
  • Cancer Genomics and Diagnostics
  • Apelin-related biomedical research
  • Gene expression and cancer classification
  • Diffusion and Search Dynamics
  • Genomics and Rare Diseases
  • Inflammasome and immune disorders
  • Statistical Methods in Clinical Trials
  • interferon and immune responses
  • Dermatological and COVID-19 studies
  • Biosimilars and Bioanalytical Methods
  • CAR-T cell therapy research
  • Chronic Kidney Disease and Diabetes
  • Genetic Associations and Epidemiology

Hospital for Special Surgery
2020-2025

Cornell University
2020-2025

Weill Cornell Medicine
2022-2025

Center for Rheumatology
2020-2023

University of California, Los Angeles
2007

10.1038/s41588-024-01682-1 article EN Nature Genetics 2024-04-01
Carlos A. Donado Erin Theisen Fan Zhang Aparna Nathan Madison L. Fairfield and 88 more Karishma Vijay Rupani Dominique Jones Kellsey Johannes Jennifer S. Albrecht Jennifer H. Anolik William Apruzzese Jennifer L. Barnas Joan M. Bathon Ami Ben‐Artzi Brendan F. Boyce David L. Boyle S. Louis Bridges Vivian P. Bykerk Debbie Campbell Arnold Ceponis Adam Chicoine Michelle Curtis Kevin D. Deane Edward F. DiCarlo Laura T. Donlin Patrick Dunn Andrew Filer Hayley L. Carr Gary S. Firestein Lindsy Forbess Laura Geraldino‐Pardilla Susan M. Goodman Ellen M. Gravallese Deepak A. Rao Peter K. Gregersen Joel M. Guthridge María Gutiérrez‐Arcelus V. Michael Holers Diane Horowitz Laura B. Hughes Lionel B. Ivashkiv Kazuyoshi Ishigaki Judith A. James Joyce B. Kang Gregory Keras Amit Lakhanpal James A. Lederer Myles Lewis Yuhong Li Katherine P. Liao Arthur M. Mandelin Ian Mantel Kathryne E. Marks Mark Maybury Andrew McDavid Mandy J. McGeachy Joseph Mears Nida Meednu Nghia Millard Larry W. Moreland Saba Nayar Alessandra Nerviani Dana E. Orange Harris Perlman Costantino Pitzalis Javier Rangel‐Moreno Karim Raza Yakir Reshef Christopher T. Ritchlin Felice Rivellese William H. Robinson Laurie Rumker Ilfita Sahbudin Saori Sakaue Jennifer Seifert Dagmar Scheel‐Toellner Anvita Singaraju Kamil Slowikowski Melanie H. Smith Darren Tabechian Paul J. Utz Kathryn Weinand Dana Weisenfeld Michael H. Weisman Qian Xiao Zhu Zhu Zhihan J. Li Andrew Cordle Aaron Wyse Soumya Raychaudhuri Daniel F. Dwyer A. Helena Jonsson Michael B. Brenner

10.1038/s41586-025-08713-9 article EN Nature 2025-02-06

To report the clinical experience with anakinra in preventing mechanical ventilation patients coronavirus disease 2019 (COVID-19), symptoms of cytokine storm syndrome, and acute hypoxemic respiratory failure.To be included this retrospective case series, must have had severe syndrome 2 (SARS-CoV-2), fever, ferritin levels >1,000 ng/ml 1 additional laboratory marker hyperinflammation, failure. Acute failure was defined as requiring 15 liters supplemental oxygen via a nonrebreather mask...

10.1002/art.41422 article EN Arthritis & Rheumatology 2020-06-30

Abstract Rheumatoid arthritis (RA) is an autoimmune disease involving antigen-specific T and B cells. Here, we perform single-cell RNA repertoire sequencing on paired synovial tissue blood samples from 12 seropositive RA patients. We identify clonally expanded CD4 + cells, including CCL5+ cells peripheral helper (Tph) which show a prominent transcriptomic signature of recent activation effector function. CD8 higher oligoclonality than with the largest clones enriched in GZMK+ possibly...

10.1038/s41467-024-49186-0 article EN cc-by Nature Communications 2024-06-11

Abstract Synovial tissue inflammation is a hallmark of rheumatoid arthritis (RA). Recent work has identified prominent pathogenic cell states in inflamed RA synovial tissue, such as T peripheral helper cells; however, the epigenetic regulation these yet to be defined. Here, we examine genome-wide open chromatin at single-cell resolution 30 samples, including 12 samples with transcriptional data multimodal experiments. We identify 24 classes and predict their associated transcription factors,...

10.1038/s41467-024-48620-7 article EN cc-by Nature Communications 2024-05-31
Joyce B. Kang Amber Shen Saisriram Gurajala Aparna Nathan Laurie Rumker and 95 more Vitor R. C. Aguiar Cristian Valencia Kaitlyn A. Lagattuta Fan Zhang A. Helena Jonsson Seyhan Yazar José Alquicira-Hernández Hamed Khalili Ashwin N. Ananthakrishnan Karthik A. Jagadeesh Kushal K. Dey Jennifer S. Albrecht William Apruzzese Nirmal K. Banda Jennifer L. Barnas Joan M. Bathon Ami Ben‐Artzi Brendan F. Boyce David L. Boyle S. Louis Bridges Vivian P. Bykerk Debbie Campbell Hayley L. Carr Arnold Ceponis Adam Chicoine Andrew Cordle Michelle Curtis Kevin D. Deane Edward F. DiCarlo Patrick Dunn Andrew Filer Gary S. Firestein Lindsy Forbess Laura Geraldino‐Pardilla Susan M. Goodman Ellen M. Gravallese Peter K. Gregersen Joel M. Guthridge V. Michael Holers Diane Horowitz Laura B. Hughes Kazuyoshi Ishigaki Lionel B. Ivashkiv Judith A. James Gregory Keras Ilya Korsunsky Amit Lakhanpal James A. Lederer Myles Lewis Zhihan J. Li Yuhong Li Katherine P. Liao Arthur M. Mandelin Ian Mantel Kathryne E. Marks Mark Maybury Andrew McDavid Mandy J. McGeachy Joseph Mears Nida Meednu Nghia Millard Larry W. Moreland Saba Nayar Alessandra Nerviani Dana E. Orange Harris Perlman Costantino Pitzalis Javier Rangel‐Moreno Karim Raza Yakir Reshef Christopher T. Ritchlin Felice Rivellese William H. Robinson Ilfita Sahbudin Anvita Singaraju Jennifer Seifert Kamil Slowikowski Melanie H. Smith Darren Tabechian Dagmar Scheel‐Toellner Paul J. Utz Gerald F. Watts Kevin Wei Kathryn Weinand Dana Weisenfeld Michael H. Weisman Aaron Wyse Qian Xiao Zhu Zhu Mark J. Daly Ramnik J. Xavier Laura T. Donlin Jennifer H. Anolik Joseph E. Powell Deepak A. Rao

10.1038/s41588-023-01586-6 article EN Nature Genetics 2023-11-30

Summary Rheumatoid arthritis (RA) is a prototypical autoimmune disease that causes destructive tissue inflammation in joints and elsewhere. Clinical challenges RA include the empirical selection of drugs to treat patients, inadequate responders with incomplete remission, lack cure. We profiled full spectrum cells inflamed synovium from patients goal deconstructing cell states pathways characterizing pathogenic heterogeneity RA. Our multicenter consortium effort used multi-modal CITE-seq,...

10.1101/2022.02.25.481990 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2022-02-28
Philip M. Carlucci Jessica Li Andrea Fava Kristina Deonaraine David Wofsy and 95 more Judith A. James Chaim Putterman Betty Diamond Anne Davidson Derek M. Fine Jose M. Monroy‐Trujillo Mohamed G. Atta Wade DeJager Joel M. Guthridge Kristin Haag Deepak A. Rao Michael B. Brenner James A. Lederer William Apruzzese H. Michael Belmont Peter Izmirly Devyn Zaminski Ming Wu Sean Connery Fernanda Payan‐Schober Richard Furie Maria Dall’Era Kerry Cho Diane L. Kamen Kenneth Kalunian Jennifer H. Anolik Jennifer L. Barnas Mariko Ishimori Michael H. Weisman J. Le Goff Patrick Dunn Soumya Raychaudhuri Fan Zhang Ilya Korsunsky Aparna Nathan Joseph Mears Kazuyoshi Ishigaki Qian Xiao Nghia Millard Kathryn Weinand Saori Sakaue Paul J. Utz Rong Mao Bill Robinson Holden T. Maecker Susan Macwana S. Louis Bridges Vivian P. Bykerk Laura T. Donlin Susan M. Goodman Edward F. DiCarlo Melanie Smith Amit Lakhanpal Heather L. Sherman Anvita Singaraju Lorien Shakib Christopher T. Ritchlin Brendan F. Boyce Darren Tabechian Andrew McDavid Javier Rangel‐Moreno Nida Meednu Jen Albrecht Kevin Wei A. Helena Jonsson Daimon P. Simmons Gregory Keras Joshua Keegan Gerald F. Watts Yuhong Li Zhu Adam Chicoine Zhihan Jian Li Ellen M. Gravallese Kaitlyn Howard Mandy J. McGeachy Gary S. Firestein David L. Boyle Arnold Ceponis Peter K. Gregersen Diane Horowitz Harris Perlman Salina Dominguez Carla M. Cuda Arthur M Mandolin Anjali Thakrar Joan M. Bathon Laura Hughes V. Michael Holers Jennifer Seifert Kevin D. Deane Larry W. Moreland Andrew Filer Karim Raza Ilfita Sahbudin Costantino Pitzalis

Delayed detection of LN associates with worse outcomes. There are conflicting recommendations regarding a threshold level proteinuria at which biopsy will likely yield actionable management. This study addressed the association urine protein:creatinine ratios (UPCR) clinical characteristics and investigated incidence proliferative membranous histology in patients UPCR between 0.5 1.A total 275 SLE (113 first biopsy, 162 repeat) were enrolled multicentre multi-ethnic/racial Accelerating...

10.1093/rheumatology/keac067 article EN Lara D. Veeken 2022-01-27
Heather J. Faust Tan-Yun Cheng Ilya Korsunsky Gerald F. Watts Shani T. Gal-Oz and 93 more William V. Trim Suppawat Kongthong A. Helena Jonsson Daimon P. Simmons Fan Zhang Robert F. Padera Susan Chubinskaya Jennifer S. Albrecht Jennifer H. Anolik William Apruzzese Jennifer L. Barnas Joan M. Bathon Ami Ben‐Artzi Brendan F. Boyce David L. Boyle S. Louis Bridges Vivian P. Bykerk Debbie Campbell Arnold Ceponis Adam Chicoine Michelle Curtis Kevin D. Deane Edward F. DiCarlo Laura T. Donlin Patrick Dunn Andrew Filer Hayley L. Carr Gary S. Firestein Lindsy Forbess Laura Geraldino‐Pardilla Susan M. Goodman Ellen M. Gravallese Deepak A. Rao Peter K. Gregersen Joel M. Guthridge María Gutiérrez‐Arcelus V. Michael Holers Diane Horowitz Laura B. Hughes Lionel B. Ivashkiv Kazuyoshi Ishigaki Judith A. James Joyce B. Kang Gregory Keras Amit Lakhanpal James A. Lederer Myles Lewis Yuhong Li Katherine P. Liao Arthur M. Mandelin Ian Mantel Kathryne E. Marks Mark Maybury Andrew McDavid Mandy J. McGeachy Joseph Mears Nida Meednu Nghia Millard Larry W. Moreland Saba Nayar Alessandra Nerviani Dana E. Orange Harris Perlman Costantino Pitzalis Javier Rangel‐Moreno Karim Raza Yakir Reshef Christopher T. Ritchlin Felice Rivellese William H. Robinson Laurie Rumker Ilfita Sahbudin Saori Sakaue Jennifer Seifert Dagmar Scheel‐Toellner Anvita Singaraju Kamil Slowikowski Melanie H. Smith Darren Tabechian Paul J. Utz Kathryn Weinand Dana Weisenfeld Michael H. Weisman Qian Xiao Zhu Zhu Zhihan J. Li Andrew Cordle Aaron Wyse Kevin Wei Soumya Raychaudhuri Lydia Lynch D. Branch Moody Michael B. Brenner

Fibroblasts play critical roles in tissue homeostasis, but pathologic states they can drive fibrosis, inflammation, and destruction. Little is known about what regulates the homeostatic functions of fibroblasts. Here, we perform RNA sequencing identify a gene expression program healthy synovial fibroblasts characterized by enhanced fatty acid metabolism lipid transport. We cortisol as key driver fibroblast phenotype that depletion adipocytes, which express high levels Hsd11b1, results loss...

10.1038/s41467-024-52586-x article EN cc-by-nc-nd Nature Communications 2024-11-14

We report a patient with severe Covid-19-associated coagulopathy and type 2 diabetes mellitus who tested positive for antiphospholipid antibodies (aPL). Analysis of skin specimens suggested direct SARS-CoV-2 viral-induced complement-mediated vascular injury thrombosis, consistent prior reports. Serial aPL testing demonstrated high levels anticardiolipin (aCL) that declined to insignificant over period 5 weeks. RNA was detected in nasopharyngeal swab on serial assays performed the same 5-week...

10.1159/000512503 article EN cc-by-nc Pathobiology 2020-11-02

Immune checkpoint inhibitors (ICI) can potentially cause ICI-inflammatory arthritis (ICI-IA), which often resembles rheumatoid (RA). In this study, we examined the degree of anticitrullinated peptide antibodies (ACPA) epitope expansion in CCP+ICI-IA and patients with RA.

10.1136/rmdopen-2023-003012 article EN cc-by-nc RMD Open 2023-06-01

We propose a stochastic process wherein molecular transport is mediated by asymmetric nucleation of domains on one-dimensional substrate, in contrast with motors that hydrolyze nucleotide triphosphates and undergo conformational change. show hydrolysis waves track can also result directed motion an attached particle. Asymmetrically cooperative kinetics between hydrolyzed unhydrolyzed states each lattice site generate moving domain walls push particle sitting the track. use novel...

10.1103/physrevlett.99.248302 article EN Physical Review Letters 2007-12-14

Abstract In rheumatoid arthritis (RA), macrophages represent key therapeutic targets due to their ability drive inflammation. Interestingly, new subtypes of RA have been identified, based on distinct patterns cell types in the joint, wherein one-third patients demonstrate an enrichment pro-fibrotic SPP1hiCLEC5Ahi macrophages. We set out understand what drives formation these joints, and how anti-inflammatory medications used treat may differentially affect joints with versus pro-inflammatory...

10.4049/jimmunol.212.supp.0437.4813 article EN The Journal of Immunology 2024-05-01

10.5152/eurjrheum.2020.2065 article EN cc-by-nc European Journal of Rheumatology 2020-05-22
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