Marie B. Shi

ORCID: 0000-0003-4214-2069
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About
Contact & Profiles
Research Areas
  • Genomics and Chromatin Dynamics
  • RNA Research and Splicing
  • CAR-T cell therapy research
  • Immune Cell Function and Interaction
  • Animal Genetics and Reproduction
  • CRISPR and Genetic Engineering
  • Congenital heart defects research
  • RNA and protein synthesis mechanisms
  • Chromosomal and Genetic Variations

Lawrence Berkeley National Laboratory
2021

University of California, San Francisco
2020

Cardiac pacemaker cells (PCs) in the sinoatrial node (SAN) have a distinct gene expression program that allows them to fire automatically and initiate heartbeat. Although critical SAN transcription factors, including Isl1 (Islet-1), Tbx3 (T-box factor 3), Shox2 (short-stature homeobox protein 2), been identified, cis-regulatory architecture governs PC-specific is not understood, discrete enhancers required for regulation identified.To define epigenetic profile of PCs using comparative...

10.1161/circresaha.120.317145 article EN Circulation Research 2020-10-12

The safety of CRISPR-based gene editing methods is the utmost priority in clinical applications. Previous studies have reported that Cas9 cleavage induced frequent aneuploidy primary human T cells, but whether cleavage-mediated base editors would generate off-target structure variations remains unknown. Here, we investigate potential structural associated with CRISPR/Cas9, ABE, and CBE mouse embryos cells by whole-genome sequencing single-cell RNA-seq analyses.

10.1186/s13059-024-03434-0 article EN cc-by-nc-nd Genome biology 2024-11-11
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