Varsha J. Thombare

ORCID: 0000-0003-4892-9313
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About
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Research Areas
  • Chemical Synthesis and Analysis
  • Antimicrobial Peptides and Activities
  • Click Chemistry and Applications
  • X-ray Diffraction in Crystallography
  • Antibiotic Resistance in Bacteria
  • Crystallization and Solubility Studies
  • Peptidase Inhibition and Analysis
  • Antimicrobial Resistance in Staphylococcus
  • Proteoglycans and glycosaminoglycans research
  • Synthesis and Catalytic Reactions
  • Cell Adhesion Molecules Research
  • Burn Injury Management and Outcomes
  • Wound Healing and Treatments
  • Cellular Mechanics and Interactions
  • Cancer therapeutics and mechanisms
  • Orthopedic Infections and Treatments
  • Synthetic Organic Chemistry Methods
  • Natural product bioactivities and synthesis
  • Biochemical and Molecular Research
  • Advanced biosensing and bioanalysis techniques
  • 14-3-3 protein interactions
  • Carbohydrate Chemistry and Synthesis
  • Advanced Proteomics Techniques and Applications
  • Pneumonia and Respiratory Infections
  • Urinary Tract Infections Management

The University of Melbourne
2017-2025

RTI International
2025

Monash University
2023-2024

Australian Regenerative Medicine Institute
2023-2024

Discovery Institute
2024

RMIT University
2022

Indian Institute of Science Education and Research Pune
2016

Indian Institute of Science Bangalore
2014

Despite advances in solid phase peptide synthesis and ligation, challenges remain the assembly of polypeptides through coupling fragments. Herein we describe a new method for peptide...

10.1039/d4ob01906g article EN Organic & Biomolecular Chemistry 2025-01-01

Outer membrane vesicles (OMVs) secreted by Gram-negative bacteria serve as transporters for the delivery of cargo such virulence and antibiotic resistance factors. OMVs play a key role in defense against membrane-targeting antibiotics polymyxin B. Herein, we conducted comparative proteomics from paired Klebsiella pneumoniae ATCC 700721 polymyxin-susceptible (polymyxin B MIC = 0.5 mg/L) an extremely resistant ≥128 mg/L), following exposure to 2 mg/L Comparative profiling OMV subproteome each...

10.1128/msphere.00537-22 article EN cc-by mSphere 2023-01-09

Abstract The impact of geometrically constrained cis α,β‐unsaturated γ‐amino acids on the folding α,γ‐hybrid peptides was investigated. Structure analysis in single crystals and solution revealed that carbon–carbon double bonds can be accommodated into 12‐helix without deviation from overall helical conformation. structures are stabilized by 4→1 hydrogen bonding a similar manner to 12‐helices β‐peptides 3 10 helices α‐peptides. These results show functional backbone peptides.

10.1002/anie.201602861 article EN Angewandte Chemie International Edition 2016-06-06

Peptide macrocyclization is often a slow process, plagued by epimerization and cyclodimerization. Herein, we describe new method for peptide employing the AgI -promoted transformation of thioamides. The has dual function: chemoselectively activating thioamide tethering N-terminal to C-terminal carboxylate. Extrusion Ag2 S generates an isoimide intermediate, which undergoes acyl transfer generate native cyclic peptide, resulting in rapid, traceless macrocylization process. Cyclic peptides are...

10.1002/anie.201900243 article EN Angewandte Chemie International Edition 2019-02-19

Abstract The Ag I ‐promoted reaction of thiolactams with N‐ Boc amino acids yields an N ‐(α‐aminoacyl) lactam that can rearrange through acyl transfer process. Boc‐deprotection results in convergence to the ring‐expanded adduct, thereby facilitating overall insertion acid into thioamide bond generate medium‐sized heterocycles. Application site‐specific cyclic peptides is demonstrated.

10.1002/chem.202005035 article EN publisher-specific-oa Chemistry - A European Journal 2020-12-02

Peptide-Peptide Nucleic Acid (PNA) conjugates targeting essential bacterial genes have shown significant potential in developing novel antisense antimicrobials. The majority of efforts this area are focused on identifying different PNA targets and the selection peptides to deliver peptide-PNA Gram-negative bacteria. Notably, a linkage strategy form conjugate plays an important role effective delivery PNAs. Recently, unique Cysteine- 2-Cyanoisonicotinamide (Cys-CINA) click chemistry has been...

10.3389/fchem.2022.843163 article EN cc-by Frontiers in Chemistry 2022-03-15

Nitrile-aminothiol conjugation (NATC) stands out as a promising biocompatible ligation technique due to its high chemo-selectivity. Herein we investigated the reactivity and substrate scope of NAT chemistry, thus developing novel pH dependent orthogonal NATC valuable tool for chemical biology. The study reaction kinetics elucidated that combination heteroaromatic nitrile aminothiol groups led formation an optimal bioorthogonal pairing, which is dependent. This pairing system was effectively...

10.1002/chem.202401674 article EN cc-by-nc Chemistry - A European Journal 2024-06-06

A significant increase in life-threatening infections caused by Gram-negative "superbugs" is a serious threat to global health. With dearth of new antibiotics the developmental pipeline, with novel mechanisms action are urgently required prevent return preantibiotic era. key strategy develop anti-infective treatments discover natural scaffolds distinct action. Laterocidine unique cyclic lipodepsipeptide activity against multiple problematic multidrug-resistant pathogens, including

10.1021/acscentsci.4c00776 article EN cc-by ACS Central Science 2024-08-06

Dityrosine cross-linking of Aβ peptides and α-synuclein is increasingly becoming recognized as a biomarker neuropathological diseases. However, there remains need for the development analytical methods that enable specific selective identification dityrosine cross-linked proteins in complex biological samples. Here, we report gas-phase fragmentation protonated under ultraviolet photodissociation (UVPD) tandem mass spectrometry (MS/MS) conditions results cleavage across Cα Cβ atoms residue....

10.1021/acs.analchem.9b02986 article EN Analytical Chemistry 2019-09-06

Abstract Bicyclic peptides are conformationally rigid molecules that can bind with high affinity and specificity to their protein target, yet significantly more protease stable than linear or monocyclic counterparts. This emerging class of has great potential for the development novel peptide therapeutics molecular probes. In this review, we highlight structural complexity, synthesis/biosynthesis, biological applications bridged bicyclic peptides.

10.1002/pep2.24057 article EN Peptide Science 2018-03-09

We have engineered biomaterials that display nanoclusters of ligands bind both integrin and syndecan-4 cell receptors. These surfaces regulate behaviors under static conditions including adhesion, spreading, actin stress fiber formation, migration. The receptors are also critical mediators cellular mechanotransduction. In this contribution we assess whether novel class materials can the response cells to applied mechanical stimulation, using shear imparted by laminar fluid flow as a model...

10.1002/jbm.a.37024 article EN Journal of Biomedical Materials Research Part A 2020-06-03

Nitrofurantoin is a commonly used chemotherapeutic agent in the treatment of uncomplicated urinary tract infections caused by problematic multidrug resistant Gram-negative pathogen

10.1128/msystems.00972-23 article EN cc-by mSystems 2023-12-11

Abstract The impact of geometrically constrained cis α,β‐unsaturated γ‐amino acids on the folding α,γ‐hybrid peptides was investigated. Structure analysis in single crystals and solution revealed that carbon–carbon double bonds can be accommodated into 12‐helix without deviation from overall helical conformation. structures are stabilized by 4→1 hydrogen bonding a similar manner to 12‐helices β‐peptides 3 10 helices α‐peptides. These results show functional backbone peptides.

10.1002/ange.201602861 article EN Angewandte Chemie 2016-06-06

Abstract Peptide macrocyclization is often a slow process, plagued by epimerization and cyclodimerization. Herein, we describe new method for peptide employing the Ag I ‐promoted transformation of thioamides. The has dual function: chemoselectively activating thioamide tethering N‐terminal to C‐terminal carboxylate. Extrusion 2 S generates an isoimide intermediate, which undergoes acyl transfer generate native cyclic peptide, resulting in rapid, traceless macrocylization process. Cyclic...

10.1002/ange.201900243 article EN Angewandte Chemie 2019-02-19

Abstract A facile synthesis of highly symmetrical tetrasubstituted pyrazines through simple aerial oxidation β‐keto γ‐amino esters is reported. The scope the reaction was examined by use various amino acid side‐chain functional groups and peptides. mild efficient transformation into may serve as an attractive strategy for self‐dimerization

10.1002/ejoc.201403237 article EN European Journal of Organic Chemistry 2014-11-25

Bicyclic analogues of celogentin C have been synthesized in which the side chain-side chain cross-links are replaced by thioether bonds. Several simplified bicyclic peptides displayed potent inhibition tubulin polymerization.

10.1002/psc.3239 article EN Journal of Peptide Science 2019-12-17
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