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Rajat Sirohi

ORCID: 0009-0009-1508-0887
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A5086047371
Research Areas
  • Cancer Genomics and Diagnostics
  • Genetics, Bioinformatics, and Biomedical Research
  • Biomedical and Engineering Education
  • Bioinformatics and Genomic Networks
  • Biotechnology and Related Fields
  • Innovative Microfluidic and Catalytic Techniques Innovation
  • Viral Infections and Vectors
  • Hepatitis B Virus Studies
  • Epigenetics and DNA Methylation
  • Hepatitis Viruses Studies and Epidemiology

Dana-Farber Cancer Institute
 2023

 Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal
OPENALEX - Publications 
Ino de Bruijn Ritika Kundra Brooke Mastrogiacomo Thinh Ngoc Tran Luke Sikina and 67 more Tali Mazor Xiang Li Angelica Ochoa Gaofei Zhao Bryan Lai Adam Abeshouse Diana Baiceanu Ersin Ciftci Uḡur Doḡrusöz Andrew Dufilie Ziya Erkoç Elena Garcia Lara Zhaoyuan Fu Benjamin E. Gross Charles Haynes Allison P. Heath David Higgins Prasanna Jagannathan Karthik Kalletla Priti Kumari James Lindsay Aaron Lisman Bas Leenknegt Pieter Lukasse Divya Madela Ramyasree Madupuri Pim van Nierop Oleguer Plantalech Joyce Quach Adam Resnick Sander Y.A. Rodenburg Baby A. Satravada Fedde Schaeffer Robert L. Sheridan Jessica Singh Rajat Sirohi S. Onur Sumer Sjoerd van Hagen Avery Wang Manda Wilson Hongxin Zhang Kelsey Zhu Nicole Rusk Samantha Brown Jessica A. Lavery Katherine S. Panageas Julia E. Rudolph Michele L. Lenoue-Newton Jeremy L. Warner Xindi Guo Haley Hunter-Zinck Thomas Yu Shirin Pilai Chelsea Nichols Stuart M. Gardos John Philip Kenneth L. Kehl Gregory J. Riely Deborah Schrag Jocelyn Lee Michael V. Fiandalo Shawn M. Sweeney Trevor J. Pugh Chris Sander Ethan Cerami Jianjiong Gao Nikolaus Schultz

Abstract International cancer registries make real-world genomic and clinical data available, but their joint analysis remains a challenge. AACR Project GENIE, an international registry collecting from 19 centers, makes >130,000 patients publicly available through the cBioPortal for Cancer Genomics (https://genie.cbioportal.org). For 25,000 patients, additional longitudinal data, including treatment outcome are being collected by GENIE Biopharma Collaborative using PRISSMM curation...

10.1158/0008-5472.can-23-0816 article EN cc-by-nc-nd Cancer Research 2023-09-05
 AACR Project GENIE Consortium Members from Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal
OPENALEX - Publications 
Ino de Bruijn Ritika Kundra Brooke Mastrogiacomo Thinh Ngoc Tran Luke Sikina and 67 more Tali Mazor Xiang Li Angelica Ochoa Gaofei Zhao Bryan Lai Adam Abeshouse Diana Baiceanu Ersin Ciftci Uḡur Doḡrusöz Andrew Dufilie Ziya Erkoç Elena Garcia Lara Zhaoyuan Fu Benjamin E. Gross Charles Haynes Allison P. Heath David Higgins Prasanna Jagannathan Karthik Kalletla Priti Kumari James Lindsay Aaron Lisman Bas Leenknegt Pieter Lukasse Divya Madela Ramyasree Madupuri Pim van Nierop Oleguer Plantalech Joyce Quach Adam Resnick Sander Y.A. Rodenburg Baby A. Satravada Fedde Schaeffer Robert L. Sheridan Jessica Singh Rajat Sirohi S. Onur Sumer Sjoerd van Hagen Avery Wang Manda Wilson Hongxin Zhang Kelsey Zhu Nicole Rusk Samantha Brown Jessica A. Lavery Katherine S. Panageas Julia E. Rudolph Michele L. Lenoue-Newton Jeremy L. Warner Xindi Guo Haley Hunter-Zinck Thomas Yu Shirin Pilai Chelsea Nichols Stuart M. Gardos John Philip Kenneth L. Kehl Gregory J. Riely Deborah Schrag Jocelyn Lee Michael V. Fiandalo Shawn M. Sweeney Trevor J. Pugh Chris Sander Ethan Cerami Jianjiong Gao Nikolaus Schultz

<p>List of AACR Project GENIE Consortium Members</p>

10.1158/0008-5472.24710450 preprint EN cc-by 2023-12-01
 AACR Project GENIE BPC Core Team Members from Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal
OPENALEX - Publications 
Ino de Bruijn Ritika Kundra Brooke Mastrogiacomo Thinh Ngoc Tran Luke Sikina and 67 more Tali Mazor Xiang Li Angelica Ochoa Gaofei Zhao Bryan Lai Adam Abeshouse Diana Baiceanu Ersin Ciftci Uḡur Doḡrusöz Andrew Dufilie Ziya Erkoç Elena Garcia Lara Zhaoyuan Fu Benjamin E. Gross Charles Haynes Allison P. Heath David Higgins Prasanna Jagannathan Karthik Kalletla Priti Kumari James Lindsay Aaron Lisman Bas Leenknegt Pieter Lukasse Divya Madela Ramyasree Madupuri Pim van Nierop Oleguer Plantalech Joyce Quach Adam Resnick Sander Y.A. Rodenburg Baby A. Satravada Fedde Schaeffer Robert L. Sheridan Jessica Singh Rajat Sirohi S. Onur Sumer Sjoerd van Hagen Avery Wang Manda Wilson Hongxin Zhang Kelsey Zhu Nicole Rusk Samantha Brown Jessica A. Lavery Katherine S. Panageas Julia E. Rudolph Michele L. Lenoue-Newton Jeremy L. Warner Xindi Guo Haley Hunter-Zinck Thomas Yu Shirin Pilai Chelsea Nichols Stuart M. Gardos John Philip Kenneth L. Kehl Gregory J. Riely Deborah Schrag Jocelyn Lee Michael V. Fiandalo Shawn M. Sweeney Trevor J. Pugh Chris Sander Ethan Cerami Jianjiong Gao Nikolaus Schultz

<p>List of AACR Project GENIE BPC Core Team Members</p>

10.1158/0008-5472.24710453 preprint EN cc-by 2023-12-01
 AACR Project GENIE BPC Core Team Members from Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal
OPENALEX - Publications 
Ino de Bruijn Ritika Kundra Brooke Mastrogiacomo Thinh Ngoc Tran Luke Sikina and 67 more Tali Mazor Xiang Li Angelica Ochoa Gaofei Zhao Bryan Lai Adam Abeshouse Diana Baiceanu Ersin Ciftci Uḡur Doḡrusöz Andrew Dufilie Ziya Erkoç Elena Garcia Lara Zhaoyuan Fu Benjamin E. Gross Charles Haynes Allison P. Heath David Higgins Prasanna Jagannathan Karthik Kalletla Priti Kumari James Lindsay Aaron Lisman Bas Leenknegt Pieter Lukasse Divya Madela Ramyasree Madupuri Pim van Nierop Oleguer Plantalech Joyce Quach Adam Resnick Sander Y.A. Rodenburg Baby A. Satravada Fedde Schaeffer Robert L. Sheridan Jessica Singh Rajat Sirohi S. Onur Sumer Sjoerd van Hagen Avery Wang Manda Wilson Hongxin Zhang Kelsey Zhu Nicole Rusk Samantha Brown Jessica A. Lavery Katherine S. Panageas Julia E. Rudolph Michele L. Lenoue-Newton Jeremy L. Warner Xindi Guo Haley Hunter-Zinck Thomas Yu Shirin Pilai Chelsea Nichols Stuart M. Gardos John Philip Kenneth L. Kehl Gregory J. Riely Deborah Schrag Jocelyn Lee Michael V. Fiandalo Shawn M. Sweeney Trevor J. Pugh Chris Sander Ethan Cerami Jianjiong Gao Nikolaus Schultz

<p>List of AACR Project GENIE BPC Core Team Members</p>

10.1158/0008-5472.24710453.v1 preprint EN cc-by 2023-12-01
 Data from Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal
OPENALEX - Publications 
Ino de Bruijn Ritika Kundra Brooke Mastrogiacomo Thinh Ngoc Tran Luke Sikina and 67 more Tali Mazor Xiang Li Angelica Ochoa Gaofei Zhao Bryan Lai Adam Abeshouse Diana Baiceanu Ersin Ciftci Uḡur Doḡrusöz Andrew Dufilie Ziya Erkoç Elena Garcia Lara Zhaoyuan Fu Benjamin E. Gross Charles Haynes Allison P. Heath David Higgins Prasanna Jagannathan Karthik Kalletla Priti Kumari James Lindsay Aaron Lisman Bas Leenknegt Pieter Lukasse Divya Madela Ramyasree Madupuri Pim van Nierop Oleguer Plantalech Joyce Quach Adam Resnick Sander Y.A. Rodenburg Baby A. Satravada Fedde Schaeffer Robert L. Sheridan Jessica Singh Rajat Sirohi S. Onur Sumer Sjoerd van Hagen Avery Wang Manda Wilson Hongxin Zhang Kelsey Zhu Nicole Rusk Samantha Brown Jessica A. Lavery Katherine S. Panageas Julia E. Rudolph Michele L. Lenoue-Newton Jeremy L. Warner Xindi Guo Haley Hunter-Zinck Thomas Yu Shirin Pilai Chelsea Nichols Stuart M. Gardos John Philip Kenneth L. Kehl Gregory J. Riely Deborah Schrag Jocelyn Lee Michael V. Fiandalo Shawn M. Sweeney Trevor J. Pugh Chris Sander Ethan Cerami Jianjiong Gao Nikolaus Schultz

<div>Abstract<p>International cancer registries make real-world genomic and clinical data available, but their joint analysis remains a challenge. AACR Project GENIE, an international registry collecting from 19 centers, makes >130,000 patients publicly available through the cBioPortal for Cancer Genomics (<a href="https://genie.cbioportal.org" target="_blank">https://genie.cbioportal.org</a>). For 25,000 patients, additional longitudinal data, including treatment...

10.1158/0008-5472.c.6960535 preprint EN 2023-12-01
 AACR Project GENIE Consortium Members from Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal
OPENALEX - Publications 
Ino de Bruijn Ritika Kundra Brooke Mastrogiacomo Thinh Ngoc Tran Luke Sikina and 67 more Tali Mazor Xiang Li Angelica Ochoa Gaofei Zhao Bryan Lai Adam Abeshouse Diana Baiceanu Ersin Ciftci Uḡur Doḡrusöz Andrew Dufilie Ziya Erkoç Elena Garcia Lara Zhaoyuan Fu Benjamin E. Gross Charles Haynes Allison P. Heath David Higgins Prasanna Jagannathan Karthik Kalletla Priti Kumari James Lindsay Aaron Lisman Bas Leenknegt Pieter Lukasse Divya Madela Ramyasree Madupuri Pim van Nierop Oleguer Plantalech Joyce Quach Adam Resnick Sander Y.A. Rodenburg Baby A. Satravada Fedde Schaeffer Robert L. Sheridan Jessica Singh Rajat Sirohi S. Onur Sumer Sjoerd van Hagen Avery Wang Manda Wilson Hongxin Zhang Kelsey Zhu Nicole Rusk Samantha Brown Jessica A. Lavery Katherine S. Panageas Julia E. Rudolph Michele L. Lenoue-Newton Jeremy L. Warner Xindi Guo Haley Hunter-Zinck Thomas Yu Shirin Pilai Chelsea Nichols Stuart M. Gardos John Philip Kenneth L. Kehl Gregory J. Riely Deborah Schrag Jocelyn Lee Michael V. Fiandalo Shawn M. Sweeney Trevor J. Pugh Chris Sander Ethan Cerami Jianjiong Gao Nikolaus Schultz

<p>List of AACR Project GENIE Consortium Members</p>

10.1158/0008-5472.24710450.v1 preprint EN cc-by 2023-12-01
 Data from Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal
OPENALEX - Publications 
Ino de Bruijn Ritika Kundra Brooke Mastrogiacomo Thinh Ngoc Tran Luke Sikina and 67 more Tali Mazor Xiang Li Angelica Ochoa Gaofei Zhao Bryan Lai Adam Abeshouse Diana Baiceanu Ersin Ciftci Uḡur Doḡrusöz Andrew Dufilie Ziya Erkoç Elena Garcia Lara Zhaoyuan Fu Benjamin E. Gross Charles Haynes Allison P. Heath David Higgins Prasanna Jagannathan Karthik Kalletla Priti Kumari James Lindsay Aaron Lisman Bas Leenknegt Pieter Lukasse Divya Madela Ramyasree Madupuri Pim van Nierop Oleguer Plantalech Joyce Quach Adam Resnick Sander Y.A. Rodenburg Baby A. Satravada Fedde Schaeffer Robert L. Sheridan Jessica Singh Rajat Sirohi S. Onur Sumer Sjoerd van Hagen Avery Wang Manda Wilson Hongxin Zhang Kelsey Zhu Nicole Rusk Samantha Brown Jessica A. Lavery Katherine S. Panageas Julia E. Rudolph Michele L. Lenoue-Newton Jeremy L. Warner Xindi Guo Haley Hunter-Zinck Thomas Yu Shirin Pilai Chelsea Nichols Stuart M. Gardos John Philip Kenneth L. Kehl Gregory J. Riely Deborah Schrag Jocelyn Lee Michael V. Fiandalo Shawn M. Sweeney Trevor J. Pugh Chris Sander Ethan Cerami Jianjiong Gao Nikolaus Schultz

<div>Abstract<p>International cancer registries make real-world genomic and clinical data available, but their joint analysis remains a challenge. AACR Project GENIE, an international registry collecting from 19 centers, makes >130,000 patients publicly available through the cBioPortal for Cancer Genomics (<a href="https://genie.cbioportal.org" target="_blank">https://genie.cbioportal.org</a>). For 25,000 patients, additional longitudinal data, including treatment...

10.1158/0008-5472.c.6960535.v1 preprint EN 2023-12-01
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