Divya Ramamoorthy

ORCID: 0000-0001-9438-0419
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About
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Research Areas
  • Amyotrophic Lateral Sclerosis Research
  • Neurogenetic and Muscular Disorders Research
  • Epigenetics and DNA Methylation
  • Biochemical and Molecular Research
  • Tissue Engineering and Regenerative Medicine
  • Biochemical Acid Research Studies
  • Prion Diseases and Protein Misfolding
  • Plant biochemistry and biosynthesis
  • Synthesis and biological activity
  • Muscle Physiology and Disorders
  • Chromatin Remodeling and Cancer
  • Protein Structure and Dynamics
  • 3D Printing in Biomedical Research
  • Congenital Ear and Nasal Anomalies
  • Seed Germination and Physiology
  • Genomics and Rare Diseases
  • interferon and immune responses
  • Ginkgo biloba and Cashew Applications
  • Parkinson's Disease Mechanisms and Treatments
  • Craniofacial Disorders and Treatments
  • Single-cell and spatial transcriptomics
  • Antibiotic Resistance in Bacteria
  • Computational Drug Discovery Methods
  • Metabolism and Genetic Disorders
  • Cleft Lip and Palate Research

Massachusetts Institute of Technology
2018-2024

IIT@MIT
2021-2022

Jawaharlal Nehru Medical College
2022

Datta Meghe Institute of Medical Sciences
2022

Moscow Institute of Thermal Technology
2020

University of South Florida
2009-2018

The University of Texas at Austin
2014-2015

John Wiley & Sons (United States)
2015

Bioengineering Center
2015

National Center for Genetic Engineering and Biotechnology
2015

Emily G. Baxi Terri G. Thompson Jonathan Li Julia Kaye Ryan G. Lim and 95 more Jie Wu Divya Ramamoorthy Leandro de Araújo Lima Vineet Vaibhav Andrea Matlock Aaron P. Frank Alyssa N. Coyne Barry Landin Loren Ornelas Elizabeth Mosmiller Sara Thrower S. Michelle Farr Lindsey Panther Emilda Gomez Erick Galvez Daniel I. Pérez Imara Meepe Susan Lei Berhan Mandefro Hannah Trost Louis Pinedo Maria G. Bañuelos Chunyan Liu Ruby Moran Veronica J. Garcia Michael J. Workman Ritchie Ho Stacia K. Wyman Jennifer Roggenbuck Matthew B. Harms Jennifer Stocksdale Ricardo Miramontes Keona Wang Vidya Venkatraman Ronald Holewenski Niveda Sundararaman Rakhi Pandey Danica-Mae Manalo Aneesh Donde Nhan Huynh Miriam Adam Brook T. Wassie Edward Vertudes Naufa Amirani Krishna Raja Reuben Thomas Lindsey R. Hayes Alex Lenail Aianna Cerezo Sarah Luppino Alanna Farrar Lindsay Pothier Carolyn Prina Todd E. Morgan Arish Jamil Sarah Heintzman Jennifer Jockel‐Balsarotti Elizabeth Karanja Jesse Markway Molly McCallum Ben Joslin Deniz Alibazoglu Stephen J. Kolb Senda Ajroud‐Driss Robert H. Baloh Daragh Heitzman T. W. Miller Jonathan D. Glass Natasha Leanna Patel-Murray Hong Yu Ervin Sinani Prasha Vigneswaran Alexander Sherman Omar Ahmad Promit Roy Jay Beavers Steven R. Zeiler John W. Krakauer Carla Agurto Guillermo Cecchi Mary Bellard Yogindra Raghav Karen Sachs Tobias Ehrenberger Elizabeth Bruce Merit Cudkowicz Nicholas J. Maragakis Raquel Norel Jennifer E. Van Eyk Steven Finkbeiner James Berry Dhruv Sareen Leslie M. Thompson Ernest Fraenkel Clive N. Svendsen

Answer ALS is a biological and clinical resource of patient-derived, induced pluripotent stem (iPS) cell lines, multi-omic data derived from iPS neurons longitudinal smartphone over 1,000 patients with ALS. This provides population-level that may be employed to identify clinical-molecular-biochemical subtypes amyotrophic lateral sclerosis (ALS). A unique smartphone-based system was collect deep data, including fine motor activity, speech, breathing linguistics/cognition. The spinal were...

10.1038/s41593-021-01006-0 article EN cc-by Nature Neuroscience 2022-02-01
Divya Ramamoorthy Kristen Severson Soumya Ghosh Karen Sachs Emily G. Baxi and 95 more Alyssa N. Coyne Elizabeth Mosmiller Lindsey R. Hayes Aianna Cerezo Omar Ahmad Promit Roy Steven R. Zeiler John W. Krakauer Jonathan Li Aneesh Donde Nhan Huynh Miriam Adam Brook T. Wassie Alex Lenail Natasha Leanna Patel-Murray Yogindra Raghav Karen Sachs Velina Kozareva Stanislav Tsitkov Tobias Ehrenberger Julia Kaye Leandro de Araújo Lima Stacia K. Wyman Edward Vertudes Naufa Amirani Krishna Kumar Raja Reuben Thomas Ryan G. Lim Ricardo Miramontes Jie Wu Vineet Vaibhav Andrea Matlock Vidya Venkatraman Ronald Holewenski Niveda Sundararaman Rakhi Pandey Danica-Mae Manalo Aaron P. Frank Loren Ornelas Lindsey Panther Emilda Gomez Erick Galvez Daniel I. Pérez Imara Meepe Susan Lei Louis Pinedo Chunyan Liu Ruby Moran Dhruv Sareen Barry Landin Carla Agurto Guillermo Cecchi Raquel Norel Sara Thrower Sarah Luppino Alanna Farrar Lindsay Pothier Hong Yu Ervin Sinani Prasha Vigneswaran Alexander Sherman S. Michelle Farr Berhan Mandefro Hannah Trost Maria G. Bañuelos Verónica Vázquez García Michael Workman Ritchie Ho Robert H. Baloh Jennifer Roggenbuck Matthew B. Harms Carolyn Prina Sarah Heintzman Stephen J. Kolb Jennifer Stocksdale Keona Wang Todd M. Morgan Daragh Heitzman Arish Jamil Jennifer Jockel‐Balsarotti Elizabeth Karanja Jesse Markway Molly McCallum Timothy J. Miller Ben Joslin Deniz Alibazoglu Senda Ajroud‐Driss Jay C. Beavers Mary Bellard Elizabeth J. Bruce Nicholas J. Maragakis Merit Cudkowicz James Berry Terri G. Thompson Steven Finkbeiner

Abstract The clinical presentation of amyotrophic lateral sclerosis (ALS), a fatal neurodegenerative disease, varies widely across patients, making it challenging to determine if potential therapeutics slow progression. We sought whether there were common patterns disease progression that could aid in the design and analysis trials. developed an approach based on mixture Gaussian processes identify clusters patients sharing similar patterns, modeling their average trajectories variability...

10.1038/s43588-022-00299-w article EN cc-by Nature Computational Science 2022-09-08
Jonathan Li Ryan G. Lim Julia Kaye Victoria Dardov Alyssa N. Coyne and 95 more Jie Wu Pamela Milani Andrew T. Cheng Terri G. Thompson Loren Ornelas Aaron P. Frank Miriam Adam Maria G. Bañuelos Malcolm Casale Veerle Cox Renan Escalante-Chong J. Gavin Daigle Emilda Gomez Lindsey R. Hayes Ronald Holewenski Susan Lei Alex Lenail Leandro de Araújo Lima Berhan Mandefro Andrea Matlock Lindsay Panther Natasha Leanna Patel-Murray Jacqueline T. Pham Divya Ramamoorthy Karen Sachs Brandon Shelley Jennifer Stocksdale Hannah Trost Mark Wilhelm Vidya Venkatraman Brook T. Wassie Stacia K. Wyman Stephanie Yang Jennifer E. Van Eyk Thomas E. Lloyd Steven Finkbeiner Ernest Fraenkel Jeffrey D. Rothstein Dhruv Sareen Clive N. Svendsen Leslie M. Thompson Hemali Phatnani Justin Kwan Dhruv Sareen James R. Broach Zachary Simmons Ximena Arcila-Londono Edward B. Lee Vivianna M Van Deerlin Neil A. Shneider Ernest Fraenkel Lyle W. Ostrow Frank Baas Noah Zaitlen James Berry Andrea Malaspina Pietro Fratta Gregory A. Cox Leslie M. Thompson Steven Finkbeiner Efthimios Dardiotis Timothy M. Miller Siddharthan Chandran Suvankar Pal Eran Hornstein Daniel J. MacGowan Terry Heiman‐Patterson Molly Hammell Nikolaos A. Patsopoulos Oleg Butovsky Josh Dubnau Avindra Nath Robert Bowser Matt Harms Mary Poss Jennifer E. Phillips‐Cremins John F. Crary Nazem Atassi Dale J. Lange Darius J. Adams Leonidas Stefanis Marc Gotkine Robert H. Baloh Suma Babu Towfique Raj Sabrina Paganoni Ophir Shalem Colin Smith Bin Zhang Brent T. Harris Iris Broce Vivian E. Drory John Ravits Corey T. McMillan Vilas Menon

Neurodegenerative diseases are challenging for systems biology because of the lack reliable animal models or patient samples at early disease stages. Induced pluripotent stem cells (iPSCs) could address these challenges. We investigated DNA, RNA, epigenetics, and proteins in iPSC-derived motor neurons from patients with ALS carrying hexanucleotide expansions

10.1016/j.isci.2021.103221 article EN cc-by iScience 2021-10-13
Stanislav Tsitkov Kelsey Valentine Velina Kozareva Aneesh Donde Aaron P. Frank and 95 more Susan Lei Michael J. Workman Ryan G. Lim Jie Wu Zhuoxing Wu Loren Ornelas Lindsay Panther Erick Galvez Daniel I. Pérez Imara Meepe Viviana Valencia Emilda Gomez Chunyan Liu Ruby Moran Louis Pinedo Ritchie Ho Julia Kaye Terri G. Thompson Dillon Shear Robert W. Baloh Maria G. Bañuelos Veronica J. Garcia Ronald Holewenski О Э Карпов Danica-Mae Manalo Berhan Mandefro Andrea Matlock Rakhi Pandey Niveda Sundararaman Hannah Trost Vineet Vaibhav Vidya Venkatraman Oliver Wang Jonathan D. Glass Arish Jamil Naufa Amirani Leandro de Araújo Lima Krishna Raja Wesley Robinson Reuben Thomas Edward Vertudes Stacia K. Wyman Carla Agurto Guillermo Cecchi Raquel Norel Omar Ahmad Emily G. Baxi Aianna Cerezo Alyssa N. Coyne Lindsey R. Hayes John W. Krakauer Nicholas J. Maragakis Elizabeth Mosmiller Promit Roy Steven R. Zeiler Miriam Adam Noura Albistami Tobias Ehrenberger Nhan Huynh Connie New Alex Lenail Jonathan Li Natasha Leanna Patel-Murray Yogindra Raghav Divya Ramamoorthy Egun Im Karen Sachs Brook T. Wassie James Berry Merit Cudkowicz Alanna Farrar Sara Thrower Sarah Luppino Lindsay Pothier Alexander Sherman Ervin Sinani Prasha Vigneswaran Hong Yu Jay C. Beavers Mary Bellard Elizabeth Bruce Senda Ajroud‐Driss Deniz Alibazoglu Ben Joslin Matthew B. Harms Sarah Heintzman Stephen J. Kolb Carolyn Prina Daragh Heitzman Todd E. Morgan Ricardo Miramontes Jennifer Stocksdale Keona Wang Jennifer Jockel‐Balsarotti Elizabeth Karanja

Amyotrophic Lateral Sclerosis (ALS), like many other neurodegenerative diseases, is highly heritable, but with only a small fraction of cases explained by monogenic disease alleles. To better understand sporadic ALS, we report epigenomic profiles, as measured ATAC-seq, motor neuron cultures derived from diverse group 380 ALS patients and 80 healthy controls. We find that chromatin accessibility heavily influenced sex, the iPSC cell type origin, ancestry, inherent variance arising sequencing....

10.1038/s41467-024-47758-8 article EN cc-by Nature Communications 2024-05-02

The National Institute of Health (NIH) Library integrated network-based cellular signatures (LINCS) program is premised on the generation a publicly available data resource cell-based biochemical responses or "signatures" to genetic environmental perturbations. NeuroLINCS uses human inducible pluripotent stem cells (hiPSCs), derived from patients and healthy controls, differentiated into motor neuron cell cultures. This multi-laboratory effort strives establish i) robust multi-omic workflows...

10.1038/s41597-022-01687-7 article EN cc-by Scientific Data 2023-01-11

Successful cellular cardiomyoplasty is dependent on biocompatible materials that can retain the cells in myocardium order to promote host tissue repair following myocardial infarction. A variety of methods have been explored for incorporating a cell-seeded matrix into heart, most popular options being direct application an injectable system or surgical implantation patch. Fibrin-based gels are suitable either these approaches, as they and mechanical properties be tailored by adjusting...

10.1002/bit.25553 article EN Biotechnology and Bioengineering 2015-02-05

The non-mevalonate dependent (NMVA) pathway for the biosynthesis of isopentenyl pyrophosphate and dimethylallyl is sole source these terpenoids production isoprenoids in apicomplexan parasites, many eubacteria, plants. absence this higher organisms has opened a new platform development novel antibiotics anti-malarials. enzyme catalyzing first step NMVA 1-deoxy-D-xylulose-5-phosphate synthase (DXPS). DXPS catalyzes thiamine pyrophosphate- Mg (II)-dependent conjugation pyruvate...

10.21767/2471-8084.100051 article EN cc-by Biochemistry & Molecular Biology Journal 2018-01-01

Humanity is burdened by malaria as millions are infected with this disease. Although advancements have been made in the treatment of malaria, optimism regarding our fight against must be tempered problem drug resistance Plasmodium parasites causing malaria. New targets required to overcome problem. The enzymes mevalonate-independent pathway isoprenoid biosynthesis for development novel antimalarial drugs. One enzyme pathway, 1-deoxy-d-xylulose-5-phosphate synthase (DXS), catalyzes conversion...

10.1016/j.fob.2013.01.007 article EN cc-by FEBS Open Bio 2013-01-01

Mechanical forces play an important role in proper embryologic development, and similarly such can directly impact pluripotency differentiation of mouse embryonic stem cells (mESC) vitro. In addition, manipulation the embryoid body (EB) microenvironment, as by incorporation microspheres or microparticles, influence fate determination. this study, we developed a mechanical stimulation regimen using permanent neodymium magnets to magnetically attract within EB. Arginine-Glycine-Aspartic Acid...

10.1371/journal.pone.0113982 article EN cc-by PLoS ONE 2014-12-12

FabH (Fatty acid biosynthesis, enzyme H, also referred to as β-ketoacyl-ACP-synthase III) is a key condensing in the type II fatty synthesis (FAS) system. The FAS pathway bacteria essential for growth and survival vastly differs from human pathway. Enzymes involved this have arisen promising biomolecular targets discovery of new antibacterial drugs. However, currently there are no clinical drugs that selectively target FabH, known inhibitors all act within active site. exerts its catalytic...

10.1021/ci3003528 article EN Journal of Chemical Information and Modeling 2013-03-27

Abstract Answer ALS is a comprehensive multi-omics approach to ascertain, at population level, the various clinical-molecular- biochemical subtypes of sporadic ALS. This national program enrolled 1046 and ALS/FTD patients along with cohort 100 matched control followed longitudinally over least one year. A smartphone-based app was employed collect deep clinical data including fine motor activity, speech, breathing linguistics/cognition. Analytics speech patterns revealed strong correlation...

10.21203/rs.3.rs-96858/v1 preprint EN cc-by Research Square (Research Square) 2020-10-28

Abstract Amyotrophic Lateral Sclerosis (ALS) is a neurodegenerative disease that complex in its onset, pattern of spread, and progression. The heterogeneity ALS makes it extremely challenging to determine if modifying therapy effectively slowing While accurately modeling progression critical developing therapeutics, current computational methods fail capture the complexity We aimed robustly characterize patterns ALS. obtained data from four clinical cohorts cover more than 3,500 patients...

10.1101/2021.05.13.21254848 preprint EN cc-by-nc-nd medRxiv (Cold Spring Harbor Laboratory) 2021-05-19

Summary Neurodegenerative diseases present a challenge for systems biology, due to the lack of reliable animal models and difficulties in obtaining samples from patients at early stages disease, when interventions might be most effective. Studying induced pluripotent stem cell (iPSC)-derived neurons could overcome these challenges dramatically accelerate broaden therapeutic strategies. Here we undertook network-based multi-omic characterization iPSC-derived motor ALS carrying genetically...

10.1101/2020.11.01.362269 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2020-11-01

Hemiarhinia is a rare congenital malformation of unknown aetiology, unilateral nasal aplasia that includes the absence an external nose and internal cavity. Around 75 cases have been reported to date. Here we presented case 2 years child who comes outpatient department with complaints deformity since birth. There were no associated symptoms deformity. anomalies. The was mentally normal, their growth within normal limits.

10.11604/pamj.2022.42.166.35225 article EN cc-by Pan African Medical Journal 2022-01-01
Jai Seth Pramod P. Wangikar Veronique Beiss Holger Spiegel Alexander Boes and 95 more Stephanie Kapelski Matthias Scheuermayer Güven Edgue M. Sack Rolf Fendel Andreas Reimann Stefan Schillberg Gabriele Pradel Rainer Fischer Regina Salvat Yiseul Choi A Bishop Chris Bailey‐Kellogg Karl E. Griswold Nur Mustafaoğlu Nuno Alves Başar Bilgiçer Takayuki Arazoe Tomoko Ogawa Kenjiro MIYOSHI Takehiko Yamato Shuichi Ohsato Takahiko Sakuma Tasuku Yamamoto Tom Arie Shigeru Kuwata Effi Cient Xiaoying Bian Alberto Plaza Feifei Yan Y Zhang Ralph‐Axel Müller Lina M. Parra Jason L. Acevedo Manfred T. Reetz X. Wu Natalie S. Grover Elena E. Paskaleva Ruchir V. Mundra Michael Page Ravi S. Kane Jonathan S. Dordick Cheng‐Chi Tai Deepak Keshwani Diego Scacalossi Voltan Pankaj Singh Kuhar Andrew G. Engel Budi Rahardjo Mark Livingston Jamuna Kandel Po‐Hsin Chou David M. Eckmann Nina Brestrich Adrian Sanden Adele Kraft Kevin S. McCann Joseph Bertolini Jürgen Hubbuch Sibylle Herzer Amit Bhangale G Barker Isha Chowdhary Mitchell M. Conover B Oјmara Leung Tsang Shuang Wang Stanley R. Krystek Yanhong Yao Siegfried Rieble Nataly Kacherovsky Geoffrey Liu Michael K. Jensen Sai-wing Pun Laura R. Geuss Andrew M. Allen Divya Ramamoorthy L. Suzanne Suggs Silvia Lopa Francesco Piraino Robert G. Kemp Di Chen Arianna B. Lovati Alessia Di Giancamillo Lorenzo Moroni Giorgio Peretti Marco Rasponi Matteo Moretti Jess Spooner Justin Keen Kalpana Nayyar Nicholas Birkett Nicholas A. Bond David Bannister Natalie J. Tigue Daniel R. Higazi

10.1002/bit.25409 article EN Biotechnology and Bioengineering 2015-05-28
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