Emily Evangelista

ORCID: 0000-0002-1018-7310
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About
Contact & Profiles
Research Areas
  • Genomics and Rare Diseases
  • Genomic variations and chromosomal abnormalities
  • Neurological diseases and metabolism
  • Prenatal Screening and Diagnostics
  • Metalloenzymes and iron-sulfur proteins
  • Cancer Genomics and Diagnostics
  • Autopsy Techniques and Outcomes
  • Artificial Intelligence in Healthcare and Education
  • Agricultural and Food Sciences
  • Folate and B Vitamins Research
  • Radiology practices and education
  • Digital Communication and Language
  • Congenital heart defects research
  • Ethics and Legal Issues in Pediatric Healthcare
  • Genetics and Neurodevelopmental Disorders
  • Porphyrin Metabolism and Disorders
  • Tracheal and airway disorders
  • Genetic factors in colorectal cancer
  • Genetic Associations and Epidemiology
  • Biotechnology and Related Fields
  • Cancer-related gene regulation
  • Music and Audio Processing
  • Metabolism and Genetic Disorders
  • Speech and dialogue systems
  • Surgical Simulation and Training

Broad Institute
2020-2024

Boston Children's Hospital
2024

University of South Florida
2023-2024

Broad Center
2023

Siwei Chen Laurent C. Francioli Julia K. Goodrich Ryan L. Collins Masahiro Kanai and 95 more Qingbo Wang Jessica Alföldi Nicholas A. Watts Christopher Vittal Laura D. Gauthier Timothy Poterba Michael W. Wilson Yekaterina Tarasova William Phu Riley Grant Mary T. Yohannes Zan Koenig Yossi Farjoun Eric Banks Stacey Donnelly Stacey Gabriel Namrata Gupta Steven Ferriera Charlotte Tolonen Sam Novod Louis Bergelson David Roazen Valentín Ruano-Rubio Miguel Covarrubias Christopher Llanwarne Nikelle Petrillo Gordon Wade Thibault Jeandet Ruchi Munshi Kathleen Tibbetts María T. Abreu Carlos A. Aguilar‐Salinas Tariq Ahmad Christine M. Albert Diego Ardissino Irina M. Armean Elizabeth G. Atkinson Gil Atzmon John Barnard Samantha Baxter Laurent Beaugerie Emelia J. Benjamin David Benjamin Michael Boehnke Lori L. Bonnycastle Erwin P. Böttinger Donald W. Bowden Matthew J. Bown Harrison Brand Steven R. Brant Ted Brookings Sam Bryant Sarah E. Calvo Hannia Campos John C. Chambers Juliana C.N. Chan Katherine R. Chao Sinéad B. Chapman Daniel I. Chasman Rex L. Chisholm Judy H. Cho Rajiv Chowdhury Mina K. Chung Wendy K. Chung Kristian Cibulskis Bruce M. Cohen Kristen M. Connolly Adolfo Correa Beryl B. Cummings Dana Dabelea John Danesh Dawood Darbar Phil Darnowsky Joshua C. Denny Ravindranath Duggirala Josée Dupuis Patrick T. Ellinor Roberto Elosúa James Emery Eleina England Jeanette Erdmann Tõnu Esko Emily Evangelista Diane Fatkin José C. Florez André Franke Jack Fu Martti Färkkilâ Kiran Garimella Jeff Gentry Gad Getz David C. Glahn Benjamin Gläser Stephen J. Glatt David B. Goldstein

10.1038/s41586-023-06045-0 article EN Nature 2023-12-06

Genetic variants that cause rare disorders may remain elusive even after expansive testing, such as exome sequencing. The diagnostic yield of genome sequencing, particularly a negative evaluation, remains poorly defined.

10.1056/nejmoa2314761 article EN New England Journal of Medicine 2024-06-05
Alicia B. Byrne Peer Arts Thuong Ha Karin S. Kassahn Lynn Pais and 95 more Anne O’Donnell‐Luria François Aguet Harindra Arachchi Christina Austin‐Tse Lawrence Babb Samantha Baxter Harrison Brand Jaime Chang Katherine R. Chao Ryan L. Collins Beryl B. Cummings Kayla Delano Stephanie DiTroia Eleina England Emily Evangelista Selin Everett Laurent C. Francioli Jack B. Fu Vijay Ganesh Kiran Garimella Laura D. Gauthier Julia K. Goodrich Sanna Gudmundsson Stacey J. Hall Yongqing Huang Steve Jahl Kristen M. Laricchia Kathryn E. Larkin Monkol Lek Gabrielle Lemire Rachel B. Lipson Alysia Kern Lovgren Daniel G. MacArthur Brian Mangilog Stacy Mano Jamie L. Marshall Thomas E. Mullen Kevin K. Nguyen Emily O’Heir Melanie O’Leary Ikeoluwa Osei‐Owusu Jorge Perez de Acha Chavez Emma Pierce‐Hoffman Heidi L. Rehm Jillian Serrano Moriel Singer‐Berk Hana Snow Matthew Solomonson Rachel G. Son Abigail Sveden Michael E. Talkowski Grace Tiao Miriam S. Udler Zaheer Valivullah Elise Valkanas Grace E. VanNoy Qingbo Wang Nicholas A. Watts Ben Weisburd Clara E. Williamson Michael W. Wilson Lauren Witzgall Monica H. Wojcik Isaac Wong Jordan C. Wood Shifa Zhang Milena Babic Mahalia S. B. Frank Jinghua Feng Paul Wang David Lawrence Leila Eshraghi Luis Arriola John Toubia Van Hung Nguyen Disna Abeysuriya Lesley C. Adès David J. Amor Susan Arbuckle Madhura Bakshi Bligh Berry Tiffany Boughtwood Adam Bournazos Alessandra Bray Fiona Chan Yuen Chan Clara W. T. Chung Jonathan R. Clark Jackie Collett Alison Colley Felicity Collins Sandra T. Cooper Mark Corbett Jane E. Dahlstrom Peter A. Dargaville

Abstract Pregnancy loss and perinatal death are devastating events for families. We assessed ‘genomic autopsy’ as an adjunct to standard autopsy 200 families who had experienced fetal or newborn death, providing a definitive candidate genetic diagnosis in 105 Our cohort provides evidence of severe atypical utero presentations known disorders identifies novel phenotypes disease genes. Inheritance 42% diagnoses were either autosomal recessive (30.8%), X-linked (3.8%) dominant (excluding de...

10.1038/s41591-022-02142-1 article EN cc-by Nature Medicine 2023-01-01
Michael H. Guo Laurent C. Francioli Sarah L. Stenton Julia K. Goodrich Nicholas A. Watts and 95 more Moriel Singer‐Berk Emily Groopman Philip W. Darnowsky Matthew Solomonson Samantha Baxter María T. Abreu Carlos A. Aguilar‐Salinas Tariq Ahmad Christine M. Albert Jessica Alföldi Diego Ardissino Irina M. Armean Gil Atzmon Eric Banks John Barnard Samantha Baxter Laurent Beaugerie Emelia J. Benjamin David Benjamin Louis Bergelson Michael Boehnke Lori L. Bonnycastle Erwin P. Böttinger Donald W. Bowden Matthew J. Bown Steven R. Brant Sarah E. Calvo Hannia Campos John C. Chambers Juliana C.N. Chan Katherine R. Chao Sinéad B. Chapman Daniel I. Chasman Siwei Chen Rex L. Chisholm Judy H. Cho Rajiv Chowdhury Mina K. Chung Wendy K. Chung Kristian Cibulskis Bruce M. Cohen Ryan L. Collins Kristen M. Connolly Adolfo Correa Miguel Covarrubias Beryl B. Cummings Dana Dabelea John Danesh Dawood Darbar Joshua C. Denny Stacey Donnelly Ravindranath Duggirala Josée Dupuis Patrick T. Ellinor Roberto Elosúa James Emery Eleina England Jeanette Erdmann Tõnu Esko Emily Evangelista Yossi Farjoun Diane Fatkin Steven Ferriera José C. Florez André Franke Martti Färkkilâ Stacey Gabriel Kiran Garimella Laura D. Gauthier Jeff Gentry Gad Getz David C. Glahn Benjamin Gläser Stephen J. Glatt David B. Goldstein Clicerio González Leif Groop Sanna Gudmundsson Namrata Gupta Andrea Haessly Christopher A. Haiman Ira M. Hall Craig L. Hanis Matthew Harms Mikko Hiltunen Matti Holi Christina M. Hultman Chaim Jalas Thibault Jeandet Mikko Kallela Diane Kaplan Jaakko Kaprio Sekar Kathiresan Eimear E. Kenny Bong-Jo Kim

10.1038/s41588-023-01608-3 article EN Nature Genetics 2023-12-06

Abstract Background Causal variants underlying rare disorders may remain elusive even after expansive gene panels or exome sequencing (ES). Clinicians and researchers then turn to genome (GS), though the added value of this technique its optimal use poorly defined. We therefore investigated advantages GS within a phenotypically diverse cohort. Methods was performed for 744 individuals with disease who were genetically undiagnosed. Analysis included review single nucleotide, indel,...

10.1101/2023.08.08.23293829 preprint EN medRxiv (Cold Spring Harbor Laboratory) 2023-08-13

Abstract Background PLA2G6-associated neurodegeneration (PLAN) comprises three diseases with overlapping features: infantile neuroaxonal dystrophy (INAD), atypical (atypical NAD), and PLA2G6-related dystonia-parkinsonism. INAD is an early onset disease characterized by progressive loss of vision, muscular control, mental skills. The prevalence has not been previously calculated. Methods To provide the most accurate estimate, we utilized two independent approaches: database-based approach...

10.1186/s13023-024-03275-x article EN cc-by Orphanet Journal of Rare Diseases 2024-10-18

Accuracy and validity of voice AI algorithms rely on substantial quality data. Although commensurable amounts data are captured daily in centers across North America, there is no standardized protocol for acoustic management, which limits the usability these datasets artificial intelligence (AI) research.

10.1002/lary.31052 article EN The Laryngoscope 2023-12-13

ABSTRACT Current clinical guidelines recommend three genetic tests for the assessment of fetal structural anomalies: karyotype to detect microscopically-visible balanced and unbalanced chromosomal rearrangements, microarray (CMA) sub-microscopic copy number variants (CNVs), exome sequencing (ES) identify individual nucleotide changes in coding sequence. Advances genome (GS) analysis suggest that it is poised displace sequential application all conventional become a single diagnostic approach...

10.1101/2020.08.12.248526 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2020-08-13

PLA2G6-Associated Neurodegeneration (PLAN) comprises three diseases with overlapping features: infantile neuroaxonal dystrophy (INAD, OMIM 256600, ORPHA: 35069), atypical (atypical NAD, 610217), and PLA2G6-related dystonia-parkinsonism (PARK14, 612953), which are caused by recessive variants in the PLA2G6 gene. INAD is an early onset disorder associated severe symptoms including ataxia, mental motor deterioration, hypotonia, progressive spastic tetraparesis, visual impairments, bulbar...

10.1016/j.gimo.2024.101067 article EN cc-by-nc-nd Genetics in Medicine Open 2024-01-01

Abstract Background PLA2G6-associated neurodegeneration (PLAN) comprises three diseases with overlapping features: infantile neuroaxonal dystrophy (INAD), atypical (atypical NAD), and PLA2G6-related dystonia-parkinsonism. INAD is an early onset disease characterized by progressive loss of vision, muscular control, mental skills. The prevalence has not been previously calculated. Methods To provide the most accurate estimate, we utilized two independent approaches: database-based approach...

10.1101/2023.12.21.23300352 preprint EN medRxiv (Cold Spring Harbor Laboratory) 2023-12-24

Copy number variants (CNVs) are significant contributors to the pathogenicity of rare genetic diseases and with new innovative methods can now reliably be identified from exome sequencing. Challenges still remain in accurate classification CNV pathogenicity. calling using GATK-gCNV was performed on exomes a cohort 6,633 families (15,759 individuals) heterogeneous phenotypes variable prior testing collected at Broad Institute Center for Mendelian Genomics GREGoR consortium. Each family's data analyzed

10.1101/2023.10.05.23296595 preprint EN cc-by medRxiv (Cold Spring Harbor Laboratory) 2023-10-05
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