Qi Yu

ORCID: 0000-0002-2110-244X
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About
Contact & Profiles
Research Areas
  • Chromosomal and Genetic Variations
  • Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities
  • Animal Genetics and Reproduction
  • Pharmacogenetics and Drug Metabolism
  • CRISPR and Genetic Engineering
  • Computational Drug Discovery Methods
  • Soybean genetics and cultivation
  • Plant Molecular Biology Research
  • Prenatal Screening and Diagnostics
  • Reproductive biology and impacts on aquatic species
  • Renal and related cancers
  • RNA Interference and Gene Delivery
  • Phytoestrogen effects and research
  • Genomic variations and chromosomal abnormalities
  • Single-cell and spatial transcriptomics
  • Epigenetics and DNA Methylation
  • Bioinformatics and Genomic Networks
  • DNA Repair Mechanisms
  • Genetic Neurodegenerative Diseases
  • Cell death mechanisms and regulation
  • Acute Kidney Injury Research
  • Advanced Welding Techniques Analysis
  • Sperm and Testicular Function
  • Endoplasmic Reticulum Stress and Disease
  • Welding Techniques and Residual Stresses

Southern Medical University
2025

Nanfang Hospital
2025

East China University of Science and Technology
2024

Northeast Agricultural University
2024

Ministry of Ecology and Environment
2024

Nanjing Institute of Environmental Sciences
2024

Chinese Academy of Sciences
2012-2023

Harvard University
2023

Boston Children's Hospital
2022-2023

Nanjing Agricultural University
2017-2023

Since the discovery of cell-free DNA (cfDNA) in maternal plasma, it has opened up new approaches for non-invasive prenatal testing. With development whole-genome sequencing, small subchromosomal deletions and duplications could be found by NIPT. This study is to review efficacy NIPT as a screening test aneuploidies CNVs 42,910 single pregnancies.A total pregnancies with different clinical features were recruited. The fetal was directly sequenced. Each chromosome...

10.1186/s40246-019-0250-2 article EN cc-by Human Genomics 2019-11-29

Neuronal tau reduction confers resilience against β-amyloid and tau-related neurotoxicity in vitro vivo. Here, we introduce a novel translational approach to lower expression of the gene MAPT at transcriptional level using gene-silencing zinc finger protein transcription factors (ZFP-TFs). Following single administration adeno-associated virus (AAV), either locally into hippocampus or intravenously enable whole-brain transduction, selectively reduced messenger RNA by 50 80% out 11 months,...

10.1126/sciadv.abe1611 article EN cc-by-nc Science Advances 2021-03-19

Abstract Renal tubular epithelial cells (TECs) can initiate an adaptive response to completely recover from mild acute kidney injury (AKI), whereas severe often leads persistence of maladaptive repair and progression fibrosis. Through profiling active DNA regulatory elements by ATAC-seq, we reveal widespread, dynamic changes in the chromatin accessibility TECs after ischemia–reperfusion injury. We show that injury-specific domains become accessible prior gene activation, creating poised...

10.1038/s41467-022-34854-w article EN cc-by Nature Communications 2022-11-28

Huanglian ( Rhizoma Coptidis ) as a popular herb has been used for the treatment of various diseases such diarrhea, eye inflammation and women's abdominal ailments. Alkaloids are considered to be responsible its pharmacological effects. In this investigation, six alkaloids (coptisine, epiberberine, berberine, jateorrhizine, palmatine magnoflorine) were systematically evaluated their inhibition cytochrome P450 isoforms (CYP1A2, CYP2C8, CYP2C9, CYP2C19, CYP2D6 CYP3A4) in human liver microsomes...

10.1002/ptr.3475 article EN Phytotherapy Research 2011-03-21

The effects of regular organic solvents on the metabolic activities various human cytochromes P450 (P450s) have been reported. However, very little is known about their influence mediated by P450s in rat liver microsomes (RLM). purpose this study was to investigate such as methanol, acetonitrile, dimethyl sulfoxide (DMSO), acetone, and ethanol CYP1A, CYP2C, CYP2D, CYP2E, CYP3A-mediated metabolism using RLM. results showed that most enzymes appeared be solvent-dependent, tested probes were...

10.1124/dmd.110.033894 article EN Drug Metabolism and Disposition 2010-08-20

Diabetic kidney disease (DKD) is the leading cause of chronic (CKD) and end-stage renal (ESRD), but pathogenesis not completely understood. Tubulointerstitial injury plays critical roles in development progression DKD. The present study aimed to investigate profile tubulointerstitial immune cell infiltration reveal underlying mechanisms between tubular interstitial inflammation DKD using bioinformatics strategies. First, xCell analysis identified cells displaying significant changes...

10.1080/21655979.2021.1976540 article EN Bioengineered 2021-01-01

Wild soybeans retain many substances significantly reduced or lost in cultivars during domestication. This study utilized LC-MS to analyze metabolites the seed coats and embryos of wild cultivated soybeans. 866 815 were identified extracts both soybean types, with 35 10 differing coat embryos, respectively. The upregulated are linked plant defense, stress responses, nitrogen cycling. MALDI-MSI results further elucidated distribution these differential cotyledons, hypocotyls, radicles. In...

10.1016/j.fochx.2024.101717 article EN cc-by-nc Food Chemistry X 2024-08-05

Background: Cisplatin is a widely used chemotherapeutic drug, whereas the clinical application greatly limited by its nephrotoxic side effect. Currently, there has been no effective treatment to prevent cisplatin-induced acute kidney injury (cisplatin-AKI). Human amniotic epithelial cells (hAECs) and their derived exosomes (EXOs) have proven effectively protect against ischemia reperfusion-induced AKI, yet roles in cisplatin-AKI are still unknown. Methods: C57BL/6J mice were given two doses...

10.3389/fcell.2021.752053 article EN cc-by Frontiers in Cell and Developmental Biology 2022-02-03

Abstract Background Optical genome mapping (OGM) is a novel assay for detecting structural variants (SVs) and has been retrospectively evaluated its performance. However, prospective evaluation in prenatal diagnosis remains unreported. This study aimed to prospectively assess the technical concordance of OGM with standard care (SOC) testing diagnosis. Methods A cohort 204 pregnant women was enrolled this study. Amniotic fluid samples from these were subjected SOC testing, which included...

10.1093/clinchem/hvae031 article EN cc-by Clinical Chemistry 2024-03-22

Complex developmental mechanisms of vertebrates are unraveled using comparative genomic approaches. Several teleosts, such as zebrafish, medaka and pufferfish, used genetic model systems because they amenable to studies gene function. The rice field eel, a freshwater fish, is emerging specific system for vertebrate sexual development its small genome size naturally occurring sex reversal. Data presented here support the use eel another important fish studies, especially in development. This...

10.1159/000074348 article EN Cytogenetic and Genome Research 2003-01-01

Summary Cellular lineage histories along with their molecular states encode fundamental principles of tissue development and homeostasis. Current lineage-recording mouse models have limited barcode diversity poor single-cell coverage, thus precluding use in tissues composed millions cells. Here, we developed DARLIN, an improved Cas9 barcoding line that utilizes terminal deoxynucleotidyl transferase (TdT) to enhance insertion events over 30 CRISPR target sites, stably integrated into 3...

10.1101/2023.01.29.526062 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-01-31

Cultivated soybeans (Glycine max) and wild soja) are rich in terpenoids, however, the distribution of these terpenoids their seeds, particularly G. soja, remains unclear. In this study, metabolomics was used to analyze terpenoid spectra seed coats cotyledons max matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI) employed image primary differential cotyledons. The analysis showed that had a higher content diterpenoids, which related flavor germination....

10.2139/ssrn.5093842 preprint EN 2025-01-01
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