Caixia Yu

ORCID: 0000-0002-3882-9979
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About
Contact & Profiles
Research Areas
  • X-ray Diffraction in Crystallography
  • Crystallization and Solubility Studies
  • Atmospheric chemistry and aerosols
  • Atmospheric aerosols and clouds
  • Remote Sensing and Land Use
  • Air Quality Monitoring and Forecasting
  • Genomics and Phylogenetic Studies
  • Air Quality and Health Impacts
  • Satellite Image Processing and Photogrammetry
  • Adipose Tissue and Metabolism
  • Cardiac, Anesthesia and Surgical Outcomes
  • Wnt/β-catenin signaling in development and cancer
  • Epigenetics and DNA Methylation
  • MicroRNA in disease regulation
  • Nanomaterials for catalytic reactions
  • Simulation and Modeling Applications
  • Genetic Mapping and Diversity in Plants and Animals
  • Meteorological Phenomena and Simulations
  • Cancer Genomics and Diagnostics
  • SARS-CoV-2 detection and testing
  • Reservoir Engineering and Simulation Methods
  • Bone health and osteoporosis research
  • Enhanced Recovery After Surgery
  • Bone Metabolism and Diseases
  • COVID-19 and healthcare impacts

Beijing Institute of Genomics
2010-2025

Chinese Academy of Sciences
2010-2025

Bozhou People's Hospital
2024

Anhui Institute of Optics and Fine Mechanics
2022-2024

Yantai University
2024

Hefei Institutes of Physical Science
2022-2024

China Meteorological Administration
2022

Jiangsu Institute of Meteorological Sciences
2022

University of Science and Technology of China
2022

Institut de Virologie
2021

The Genome Sequence Archive (GSA) is a data repository for archiving raw sequence data, which provides storage and sharing services worldwide scientific communities. Considering explosive growth with diverse types, here we present the GSA family by expanding into set of resources archive different purposes, namely, (https://ngdc.cncb.ac.cn/gsa/), Human (GSA-Human, https://ngdc.cncb.ac.cn/gsa-human/), Open Miscellaneous Data (OMIX, https://ngdc.cncb.ac.cn/omix/). Compared 2017 version, has...

10.1016/j.gpb.2021.08.001 article EN cc-by-nc-nd Genomics Proteomics & Bioinformatics 2021-08-01

Abstract A new variant of concern for SARS-CoV-2, Omicron (B.1.1.529), was designated by the World Health Organization on November 26, 2021. This study analyzed viral genome sequencing data 108 samples collected from patients infected with Omicron. First, we found that enrichment efficiency nucleic acids reduced due to mutations in region where primers anneal to. Second, possesses an excessive number compared other variants circulating at same time (median: 62 vs. 45), especially Spike gene....

10.1016/j.gpb.2022.01.001 article EN cc-by Genomics Proteomics & Bioinformatics 2022-01-13

Abstract Summary: mRNA/miRNA-seq technology is becoming the leading to globally profile gene expression and elucidate transcriptional regulation mechanisms in living cells. Although there are many tools available for analyzing RNA-seq data, few of them as easy accessible online web processing both mRNA miRNA data based user community. As such, we have developed a comprehensive application tool mRNA-seq miRNA-seq data. Our wapRNA includes four different modules: sequenced from SOLiD or Solexa...

10.1093/bioinformatics/btr504 article EN Bioinformatics 2011-09-06

ARC5 is a dynamin-related GTPase essential for the division of chloroplasts in plants. The arc5 mutant frequently exhibits enlarged, dumbbell-shaped chloroplasts, indicating role constriction chloroplast site. In screen mutants with phenotype similar to arc5, two mutants, cpd25 and cpd45, were obtained. CPD45 was identified as being same gene FHY3, key regulator far-red light signaling recently shown be involved regulation ARC5. CPD25 previously named FRS4 homologous FHY3. We found that also...

10.1111/tpj.12240 article EN The Plant Journal 2013-05-11

The Genome Warehouse (GWH), accessible at https://ngdc.cncb.ac.cn/gwh, is an extensively utilized public repository dedicated to the deposition, management and sharing of genome assembly sequences, annotations, metadata. This paper highlights noteworthy enhancements GWH since 2021 version, emphasizing substantial advancements in web interfaces for data submission, database functionality updates, resource integration. Key updates include reannotation released prokaryotic genomes, mirroring...

10.1093/gpbjnl/qzaf010 article EN cc-by Genomics Proteomics & Bioinformatics 2025-02-20

During 14–16 March 2021, a large-scale dust storm event occurred in the northern region of China, and it was considered most intense past decade. This study employs observation data for PM2.5 PM10 from air quality monitoring station, HYSPLIT model, ground-based polarized Lidar networks, AGRI payload Fengyun satellites CALIPSO satellite to jointly explore scrutinize three-dimensional spatial temporal characteristics aerosol transport. Firstly, by integrating meteorological PM10, is assessed...

10.3390/rs16071196 article EN cc-by Remote Sensing 2024-03-29

The Genome Sequence Archive Family (GSA family) provides a suite of database resources for archiving, retrieving, and sharing multi-omics data the global academic industrial communities. It currently comprises four distinct members: (GSA, https://ngdc.cncb.ac.cn/gsa/), Human (GSA-Human, https://ngdc.cncb.ac.cn/gsa-human/), open Miscellaneous Data (OMIX, https://ngdc.cncb.ac.cn/omix/), Open Biomedical Imaging (OBIA, https://ngdc.cncb.ac.cn/obia). Compared to 2021 version, GSA family has...

10.1101/2025.03.31.646270 preprint EN cc-by 2025-04-07

Abstract. The regional lockdowns, implemented around the world over 2020–2022 to contain rapid spread of novel coronavirus disease 2019 (COVID-19), inadvertently created a natural laboratory for investigating effect reducing anthropogenic emissions on urban air quality in unprecedentedly large temporal and spatial scales. In this study, we analyze multi-year surface PM2.5 observations 21 cities globe examine anomaly daily concentrations during major COVID-19 lockdowns with respect that...

10.5194/egusphere-2025-1750 preprint EN cc-by 2025-04-25

Abstract A new variant of concern for SARS-CoV-2, Omicron (B.1.1.529), was designated by the World Health Organization on November 26, 2021. This study analyzed viral genome sequencing data 108 samples collected from patients infected with Omicron. First, we found that enrichment efficiency nucleic acids reduced due to mutations in region where primers anneal to. Second, possesses an excessive number compared other variants circulating at same time (62 vs . 45), especially Spike gene....

10.1101/2022.01.05.474231 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2022-01-05

Whole-Genome Bisulfite Sequencing (WGBS) and genome-wide Reduced Representation (RRBS) are widely used to study DNA methylation. However, data analysis is complicated, lengthy, hampered by a lack of seamless analytical pipelines. To address these issues, we developed convenient, stable, efficient web service called Web Service for Data Analysis (WBSA) analyze bisulfate sequencing data. WBSA focuses on not only CpG methylation, which the most common biochemical modification in eukaryotic DNA,...

10.1371/journal.pone.0086707 article EN cc-by PLoS ONE 2014-01-30

Small RNAs are a group of regulatory RNA molecules that control gene expression at transcriptional or post-transcriptional levels among eukaryotes. The silkworm, Bombyx mori L., genome harbors abundant repetitive sequences derived from families retrotransposons and transposons, which together constitute almost half the space provide ample resource for biogenesis three major small families. We systematically discovered transposable-element (TE)-associated in B. based on deep RNA-sequencing...

10.1371/journal.pone.0036599 article EN cc-by PLoS ONE 2012-05-08

Abstract The Genome Sequence Archive (GSA) is a data repository for archiving raw sequence data, which provides storing and sharing services worldwide scientific communities. Considering explosive growth with diverse types, here we present the GSA family by expanding into set of resources archive different purposes, namely, ( https://ngdc.cncb.ac.cn/gsa/ ), Human (GSA-Human, https://ngdc.cncb.ac.cn/gsa-human/ Open Miscellaneous Data (OMIX, https://ngdc.cncb.ac.cn/omix/ ). Compared 2017...

10.1101/2021.06.29.449849 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2021-07-01

A 2D NiCo-MOF bimetallic nanosheet was constructed as a single-atom catalyst and it exhibited excellent performance for the hydrogenation of various nitroarenes aldehyde compounds, in terms high conversion, selectivity rapid kinetics.

10.1039/d4qi02343a article EN Inorganic Chemistry Frontiers 2024-01-01

The main aim of this study was to evaluate the association between education level and osteoporosis (OP) in general Chinese Men. We conducted a large-scale, community-based, cross-sectional investigate by using self-report questionnaire assess levels. data 1092 men were available for analysis study. Multiple regression models controlling confounding factors include performed explore relationship OP. Positive correlations T-score quantitative bone ultrasound (QUS-T score) reported (β = 0.108,...

10.1186/s12891-015-0839-0 article EN cc-by BMC Musculoskeletal Disorders 2015-12-01
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