A5100327423- Genomics and Phylogenetic Studies
- Aquaculture disease management and microbiota
- Microbial Community Ecology and Physiology
- Photosynthetic Processes and Mechanisms
- Identification and Quantification in Food
- Molecular Biology Techniques and Applications
- Rabies epidemiology and control
- Cancer Genomics and Diagnostics
- Plant Gene Expression Analysis
- Biochemical and Structural Characterization
- Aquaculture Nutrition and Growth
- Single-cell and spatial transcriptomics
- Machine Learning in Bioinformatics
- Invertebrate Immune Response Mechanisms
- Plant-Microbe Interactions and Immunity
- Gene expression and cancer classification
- Wildlife Ecology and Conservation
- Bioinformatics and Genomic Networks
- Methane Hydrates and Related Phenomena
- Studies on Chitinases and Chitosanases
- Planarian Biology and Electrostimulation
- Chromosomal and Genetic Variations
- Plant Pathogenic Bacteria Studies
- Environmental DNA in Biodiversity Studies
- Botanical Studies and Applications
South China Sea Institute Of Oceanology
2025
Institute of Oceanology
2025
Chinese Academy of Sciences
2021-2024
Shanghai Center For Bioinformation Technology
2021-2024
Beijing Institute of Genomics
2021-2024
Hetao College
2024
Nextomics Biosciences (China)
2024
Grandomics (China)
2024
National Institute for Communicable Disease Control and Prevention
2023
Chinese Academy of Agricultural Sciences
2022
The Genome Sequence Archive (GSA) is a data repository for archiving raw sequence data, which provides storage and sharing services worldwide scientific communities. Considering explosive growth with diverse types, here we present the GSA family by expanding into set of resources archive different purposes, namely, (https://ngdc.cncb.ac.cn/gsa/), Human (GSA-Human, https://ngdc.cncb.ac.cn/gsa-human/), Open Miscellaneous Data (OMIX, https://ngdc.cncb.ac.cn/omix/). Compared 2017 version, has...
Sorghum (Sorghum bicolor (L.) Moench) is a world cereal crop used in China for producing Baijiu, distilled spirit. We report telomere-to-telomere genome assembly of the Baijiu cultivar Hongyingzi, HYZ-T2T, using ultralong reads. The 10 chromosome pairs contained 33,462 genes, which 93% were functionally annotated. 20 telomeres and centromeric regions on HYZ-T2T chromosomes predicted two consecutive large inversions 2 characterized. A 65-gene reconstruction metabolic pathway tannins, flavor...
Two aerobic, rod-shaped, non-motile, non-sporulating and Gram-staining-negative bacterial strains, namely NH6-24T Za3-11, were isolated from the surface seawater of South China Sea estuary Yangtze River, respectively. The two isolates grew at 14–44 °C (optimum 37–40 °C) pH 6.0–8.5 7.0–7.5). sea salt ranges for growth 0.5–10 % (w/v) 1–2.5 %) strain 0–12 0.5–4.5 Za3-11.Both strains could grow in absence NaCl. Results phylogenetic analysis based on 16S rRNA gene sequences indicated that showed...
An aerobic, coccoid to short rod, yellow-pigmented, non-sporulating and Gram-staining-negative bacterium, designated NH6-79T, was isolated from surface seawater of the South China Sea. The isolate motile with a polar flagellum. Growth observed at 4-42 °C (optimum 37 °C), pH 6.0-8.5 7.0), 0.5-11 % (w/v) NaCl 4.5 %) 1.5-17 sea salt 3.5-5 %). Strain NH6-79T could decompose peptone produce H2S, but not hydrolyse skimmed milk. Phylogenetic analysis based on 16S rRNA gene sequences indicated that...
Low ground temperature is a major factor limiting overwintering in cucumber cultivation facilities northern alpine regions. Lower temperatures the root zone directly affect physiological function of system, which turn affects normal activity plants. However, importance has not attracted sufficient attention.
Objective: This study was aimed at exploring immune-related genes and their expression changes in myocardial infarction (MI) through comprehensive bioinformatics methods validating these as potential diagnostic therapeutic targets. Methods: Gene data were analyzed from three datasets: GSE29111 GSE66360, which combined a training set, GSE48060, served the validation set. We performed differential gene analysis, GO/KEGG enrichment protein-protein interaction (PPI) network weighted...
<title>Abstract</title> Vibriosis caused by various <italic>Vibrio</italic> species is the most serious bacterial disease of shrimp. Due to prevalence pathogenic vibrios, genetic breeding shrimps with pan-vibrios resistance (PVR) trait has more practical significance for successful shrimp farming. To explore loci associated PVR <italic>Litopenaeus vannamei</italic>, a genome-wide association study (GWAS) aiming at was conducted using 300 individuals from sources. After stringent screening,...
Litopenaeus vannamei is a key economic species in aquaculture, yet the molecular mechanisms underlying its growth variability remain unclear. This study conducted transcriptomic and metabolomic analyses of fast-growing (NL) slow-growing (NS) shrimp under identical conditions. A total 1280 differentially expressed genes (DEGs) related to protein processing, ribosomes, oxidative phosphorylation, along with 5297 abundant metabolites (DMs) involved arginine biosynthesis, amino acid metabolism,...
A thermotolerant, extremely halophilic archaeon, BC12-B1(T), was isolated from a salt mine in Baicheng county, Xinjiang province, China. Colonies were off-white-grey. The cells stained Gram-negative, motile and irregularly long-rod-shaped (variation both width length) with abundant gas vesicles. strain able to grow at 20-55 °C (optimum, 48 °C), pH 6.0-8.0 7.0-7.3), 1.8-6.0 M NaCl 3.0-3.5 M) 0.02-2.2 Mg(2+) 0.1-0.2 M). Cells lysed distilled water the minimal concentration prevent cell lysis 8...
Abstract The Genome Sequence Archive (GSA) is a data repository for archiving raw sequence data, which provides storing and sharing services worldwide scientific communities. Considering explosive growth with diverse types, here we present the GSA family by expanding into set of resources archive different purposes, namely, ( https://ngdc.cncb.ac.cn/gsa/ ), Human (GSA-Human, https://ngdc.cncb.ac.cn/gsa-human/ Open Miscellaneous Data (OMIX, https://ngdc.cncb.ac.cn/omix/ ). Compared 2017...
Orychophragmus violaceus, referred to as "eryuelan" (February orchid) in China, is an early-flowering ornamental plant. The high oil content and abundance of unsaturated fatty acids O. violaceus seeds make it a potential high-quality oilseed crop. Here, we generated whole-genome assembly for using Nanopore Hi-C sequencing technologies. assembled genome was ∼1.3 Gb size, with 12 pairs chromosomes. Through investigation ancestral evolution, determined that the experienced tetraploidization...
Prunus davidiana is a Chinese wild peach species belonging to the family Rosaceae. In this study, we first assembled complete chloroplast (cp) genome of P. by Illumina paired-end reads data, then carried out phylogenetic analysis. The cp was 158,055 bp, containing large single copy region (LSC) 86,248 bp and small (SSC) 19,047 separated pair inverted repeats (IRs) 26,380 bp. contained 131 genes, including 86 protein-coding 37 transfer RNA (tRNA) genes 8 ribosomal (rRNA) genes. result...
Abstract Convolutional neural network (CNN) has been widely used for fine-grained image classification, which proven to be an effective approach the classification and identification of specific species. For breed dog, there are several proposed methods based on dog images, however, highest accuracy rate dogs (about 93%) is still below expectations compared other animals or plants (more than 95% birds more 97% flowers). In this study, we Stanford Dog Dataset, combined features from four CNN...
In 2019, two distinct bacterial isolates were independently isolated from the fecal samples of separate dogs in Beijing, China. These cells exhibit microaerobic, are Gram-negative, motile, and possess a characteristic spiral shape with bipolar single flagellum. They display positive results for oxidase test while being negative both catalase urease. organisms measure approximately 0.2–0.3 μm width 4.5–6 length. The colonies wet, flat, grey, circular, smooth sizes ranging 1 to 2 mm diameter...
When classifying breeds of dogs, the accuracy classification significantly affects breed identification and dog research. Using images to classify can improve efficiency; however, it is increasingly challenging due diversities similarities among breeds. Traditional image methods primarily rely on extracting simple geometric features, while current convolutional neural networks (CNNs) are capable learning high-level semantic features. However, diversity continues pose a challenge accuracy. To...
Malus transitoria, belongs to the genus of family Rosaceae, which is native China. In this study, our results showed complete chloroplast genome M. transitoria 159,847 bp in length consisting a pair inverted repeats (IRs) with 26,365 bp, separating by two single-copy regions (LSC, 87,896 and SSC, 19,221 bp). total, 112 genes was annotated comprising 78 protein-coding genes, 30 tRNA 4 rRNA genes. A total 102 SSRs 49 long were identified transitoria. The phylogenetic analysis revealed that has...
Medicago truncatula leaves were used as the experimental materials. Total proteins of leaves extracted by trichloracetic acid (TCA)-acetone method and had a better separation using gel strips, forming an immobilized non-linear 3 to 10 pH gradient focusing 123,000 vhr combined with 12% sodium dodecyl sulfate polyacrylamide electrophoresis (SDS-PAGE). The gels stained Coomassie Brilliant Blue G-250 digitalized analyzed PDquest 8.0.1 software. results indicated that 931 protein dots...
Most of today's genome sequencing technology requires that genomes be sequenced in fragments. Typically, these fragments are then aligned using a variety different alignment programs. All tools query against reference database to determine the most accurate reassembly original DNA strand's nucleotide sequence. Although programs can align both and protein space, each method comes with its own disadvantages. Protein aligners such as PALADIN consistently greater percent reads faster provide...
Abstract The new coronavirus was checked on December 12, 2019, and spread rapidly over time. It has become a public health event spreading around the world. Until this time, source of virus remains controversial. In paper, series SARS-CoV-2 genomes were collected using A1 module MAS for visualization. Pairs are compared under similarity relationships between other deadly viruses carried by different species. Through proposed method variant construction, it provides important information to...
Abstract The new coronavirus was checked on December 12, 2019, and spread rapidly over time. It has become a public health event spreading around the world. Until this time, source of virus remains controversial. In paper, series SARS-CoV-2 genomes were collected using A1 module MAS for visualization. Pairs are compared under similarity relationships between other deadly viruses carried by different species. Through proposed method variant construction, it provides important information to...