Ying Ruan

ORCID: 0000-0003-2645-5049
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About
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Research Areas
  • Plant Molecular Biology Research
  • Photosynthetic Processes and Mechanisms
  • Plant Reproductive Biology
  • Plant nutrient uptake and metabolism
  • Plant Gene Expression Analysis
  • Lipid metabolism and biosynthesis
  • Plant Stress Responses and Tolerance
  • Plant tissue culture and regeneration
  • Nitrogen and Sulfur Effects on Brassica
  • Plant biochemistry and biosynthesis
  • 14-3-3 protein interactions
  • Research in Cotton Cultivation
  • Colorectal Cancer Surgical Treatments
  • Plant Genetic and Mutation Studies
  • Plant Parasitism and Resistance
  • Toxin Mechanisms and Immunotoxins
  • Ubiquitin and proteasome pathways
  • GABA and Rice Research
  • Plant Pathogens and Fungal Diseases
  • Plant-Microbe Interactions and Immunity
  • Plant Disease Resistance and Genetics
  • Surgical site infection prevention
  • Genomics and Phylogenetic Studies
  • Plant Physiology and Cultivation Studies
  • Soybean genetics and cultivation

Hunan Agricultural University
2015-2024

Huazhong Agricultural University
2020-2024

Hubei University of Science and Technology
2010-2024

Weatherford College
2024

Third Affiliated Hospital of Sun Yat-sen University
2017-2023

Sun Yat-sen University
2017-2023

Education Department of Hunan Province
2016-2022

Fudan University
2009

State Key Laboratory of Genetic Engineering
2009

Heidelberg University
2009

Many plant organs have the ability to regenerate a new after detachment or wounding via de novo organogenesis. During root organogenesis from Arabidopsis thaliana leaf explants, endogenic auxin is essential for fate transition of regeneration-competent cells become founder activation WUSCHEL-RELATED HOMEOBOX 11 (WOX11). However, molecular events explant auxin-mediated cell are poorly understood. In this study, we used an assay determine concentration indole-3-acetic acid (IAA) provide direct...

10.1093/jxb/erw213 article EN cc-by Journal of Experimental Botany 2016-06-02

Ubiquitous CCCH nucleic acid-binding motif is found in a wide-variety of organisms. genes are involved plant developmental processes and biotic abiotic stress responses. Brassica rapa vital economic crop classical model polyploidy evolution, but the functions B. unclear.In this study, 103 were identified. A comparative analysis chromosomal position, gene structure, domain organization duplication event between Arabidopsis thaliana performed. Results showed that could be divided into 18...

10.1186/s12870-018-1608-7 article EN cc-by BMC Plant Biology 2018-12-01

Acute lung injury (ALI) remains a common cause of morbidity and mortality worldwide, to date, there is no effective treatment for ALI. Previous studies have revealed that topical administration mesenchymal stem cells (MSCs) can attenuate the pathological changes in experimental acute injury. Heat shock (HS) pretreatment has been identified as method enhance survival function cells. The present study aimed assess whether HS-pretreated MSCs could immunomodulation recovery from ALI.HS was...

10.1186/s13287-021-02328-3 article EN cc-by Stem Cell Research & Therapy 2021-05-17

Abstract Understanding the evolutionary forces in speciation is a central goal biology. Asian cultivated rice has two subspecies, indica and japonica , but underlying mechanism of partial reproductive isolation between them remains obscure. Here we show presence-absence variation (PAV) at Se locus functions as an indica-japonica barrier by causing hybrid sterility (HS) crosses. The comprises adjacent genes: ORF3 encodes sporophytic pollen killer, whereas ORF4 protects gametophytic manner. In...

10.1038/s41467-023-40189-x article EN cc-by Nature Communications 2023-07-28

The SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain is an evolutionarily conserved sequence of approximately 130-150 amino acids, and constitutes the catalytic site lysine methyltransferases (KMTs). KMTs perform many crucial biological functions via histone methylation chromatin. Histone marks are interpreted differently depending on type (i.e. H3 or H4), position (e.g. H3K4, H3K9, H3K27, H3K36 H4K20) number added methyl groups me1, me2 me3). For example, H3K4me3 H3K36me3 associated...

10.1186/1471-2229-11-175 article EN cc-by BMC Plant Biology 2011-12-01

Abstract In tissue culture, the formation of callus from detached explants is a key step in plant regeneration; however, regenerative abilities different species are variable. While nearly all parts organs dicot Arabidopsis thaliana ready for formation, mature regions monocot rice ( Oryza sativa ) and other cereals extremely unresponsive to culture. Whether there common molecular mechanism beyond these phenomena unclear. Here we show that use regeneration‐competent cells initiate callus,...

10.1002/reg2.82 article EN cc-by Regeneration 2017-06-01

Foxtail millet (Setaria italica (L.) P. Beauv) is an important food and forage crop because of its health benefits adaptation to drought stress; however, reports transcriptomic analysis genes responding re-watering after stress in foxtail are rare. The present study evaluated physiological parameters, such as proline content, p5cs enzyme activity, anti-oxidation activities, investigated gene expression patterns using RNA sequencing the drought-tolerant variety (Jigu 16) treated with...

10.3390/ijms21228520 article EN International Journal of Molecular Sciences 2020-11-12

Although increasing experimental evidence demonstrates that histone methylations play important roles in Arabidopsis plant growth and development, little information is available regarding Brassica napus. In this study, we characterized two genes encoding homologues of the 3 lysine 36 (H3K36) methyltransferase SDG8, namely, BnaSDG8.A BnaSDG8.C. no duplication SDG8 homologous had been previously reported to occur during evolution any sequenced species, a domain-duplication was uncovered This...

10.1111/tpj.13978 article EN The Plant Journal 2018-05-24

Polycomb group (PcG) proteins play important roles in animal and plant development stress response. repressive complex 1 (PRC1) PRC2 are the key epigenetic regulators of gene expression, involved almost all developmental stages. PRC1 catalyzes H2A monoubiquitination resulting transcriptional silencing or activation. The components green lineage were identified evolution conservation was analyzed by bioinformatics techniques. RING Finger Protein (RING1), B lymphoma Mo-MLV insertion region...

10.1186/s12864-019-5905-9 article EN cc-by BMC Genomics 2019-06-28

Plant trichomes formed by specialized epidermal cells play a role in protecting plants from biotic and abiotic stresses can also influence the economic ornamental value of plant products. Therefore, further studies on molecular mechanisms trichome growth development are important for understanding formation agricultural production. SET Domain Group 26 (SDG26) is histone lysine methyltransferase. Currently, mechanism which SDG26 regulates Arabidopsis leaf still unclear. We found that mutant...

10.3390/plants12081651 article EN cc-by Plants 2023-04-14

The application of phosphorus-solubilizing bacteria is an effective method for increasing the available phosphorus content and inhibiting wheat uptake heavy metals. However, further research needed on mechanism by which inhibit cadmium (Cd) in roots its impact expression root-related genes. Here, effects strain Klebsiella aerogenes M2 Cd absorption detoxification immobilization genes were determined. Compared with control, reduced (64.1–64.6%) roots. fluorescence staining revealed that...

10.3390/plants13141989 article EN cc-by Plants 2024-07-21

Sequential carbohydrate synthesis is important for plant survival because it guarantees energy supplies growth and development during ontogeny reproduction. Starch fructan are two carbohydrates in many flowering plants human diets. Understanding this coordinated starch unraveling how allocate photosynthates prioritize different could lead to improvements cereals agriculture the purposes of greater food security production quality. Here, we report a system from single gene barley employing...

10.1016/j.molp.2017.10.013 article EN cc-by-nc-nd Molecular Plant 2017-11-08

Summary The heterochromatin of many eukaryotes is marked by both histone H3 lysine 9 (H3K9) methylation and DNA cytosine methylation. Several studies have revealed links between these two epigenetic markers. molecular mechanisms involved in establishment links, however, remain largely unknown. In plants, H3K9 primarily carried out a highly conserved family proteins that contain SET SRA (SET‐ RING‐associated) domains. Here, we show the SRA‐SET domain methyltransferase NtSET1, as well LIKE...

10.1111/j.1365-313x.2007.03286.x article EN The Plant Journal 2007-09-24

Low temperature is a major environmental factor, which limits rapeseed (Brassica napus L.) growth, development, and productivity. So far, the physiological molecular mechanisms of responses to cold stress are not fully understood. Here, we explored transcriptome metabolome profiles two genotypes with contrasting responses, i.e., XY15 (cold-sensitive) GX74 (cold-tolerant). The global profiling detected 545 metabolites in siliques both before (CK) after cold-stress treatment (LW). contents...

10.3390/ijms232113546 article EN International Journal of Molecular Sciences 2022-11-04

Oral antibiotics (OA) combined with mechanical bowel preparation (MBP) significantly decrease the rate of surgical site infections (SSIs). However, prophylactic effects in region-specific colorectal surgery have not been assessed.

10.1097/js9.0000000000000569 article EN cc-by-nc-nd International Journal of Surgery 2023-09-13
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