A5100729736- Genomics and Phylogenetic Studies
- Microbial Community Ecology and Physiology
- Potato Plant Research
- Polyamine Metabolism and Applications
- Plant Pathogens and Resistance
- Aquaculture disease management and microbiota
- Amino Acid Enzymes and Metabolism
- Probiotics and Fermented Foods
- Rice Cultivation and Yield Improvement
- Plant Molecular Biology Research
- Protist diversity and phylogeny
- Crop Yield and Soil Fertility
- Plant nutrient uptake and metabolism
- Plant Physiology and Cultivation Studies
- Vibrio bacteria research studies
- Legume Nitrogen Fixing Symbiosis
- Plant Water Relations and Carbon Dynamics
- Circular RNAs in diseases
- Agronomic Practices and Intercropping Systems
- Polar Research and Ecology
- Protein Hydrolysis and Bioactive Peptides
- Microbial Natural Products and Biosynthesis
- MicroRNA in disease regulation
- Identification and Quantification in Food
- Microbial Metabolism and Applications
The Affiliated Yongchuan Hospital of Chongqing Medical University
2025
Chongqing Medical University
2025
Ningbo University
2025
Hohai University
2021-2024
Anhui Agricultural University
2022-2024
Sichuan Academy of Agricultural Sciences
2016-2024
Beijing Union University
2024
Sichuan Agricultural University
2020-2024
Children's Hospital of Fudan University
2024
China Agricultural University
2014-2023
Genome-scale phylogenetic analysis based on core gene sets is routinely used in microbiological research. However, the techniques are still not approachable for individuals with little bioinformatics experience. Here, we present EasyCGTree, a user-friendly and cross-platform pipeline to reconstruct genome-scale maximum-likehood (ML) tree using supermatrix (SM) supertree (ST) approaches.EasyCGTree was implemented Perl programming languages built collection of published reputable programs. All...
Increasing evidence indicates that gut microbiota may play a key role in vaccination immunity. Here, we investigate whether the human and metabolic function correlate with BBIBP-CorV vaccine response. A total of 207 participants who received are enrolled. The microbiome functions investigated using metagenomic sequencing metabolomic assays. We find is accompanied by altered composition functional pathways, its profiles levels short-chain fatty acids (SCFAs) much higher high antibody response...
The families Paracoccaceae and Roseobacteraceae comprise metabolically, phenotypically genotypically diverse members, their descriptions rely heavily on 16S rRNA gene analysis. Hundreds of genera have been reported within the two misclassifications a reoccurring problem, even when taxonomies established based genome-scale phylogenetic reconstructions. In this study, we conducted comprehensive phylotaxonomic assessment four ubiquitous sets, bac120 (120 genes in Bacteria), rhodo268 (268 ‘...
Background Tephritid fruit flies in the genus Bactrocera are of major economic significance agriculture causing considerable loss to and vegetable industry. Currently, there is no ideal control program. Molecular means an effective method for pest at present, but genomic or transcriptomic data members this remains limited. To facilitate molecular research into reproduction development mechanisms, finally on these pests, extensive transcriptome oriental fly dorsalis was produced using Roche...
Summary African cultivated rice ( Oryza glaberrima Steud.) was domesticated from its wild progenitor species barthii ) about 3000 years ago. Seed shattering is one of the main constraints on grain production in rice, which causes severe losses during harvest. By contrast, Asian sativa displays greater resistance to seed shattering, allowing higher production. A better understanding regulation would help improve harvesting efficiency rice. Here, we report map‐based cloning and...
During farm-to-consumer transport, a live supply chain can aid in maintaining the quality of whiteleg shrimp (Penaeus vannamei). However, changes muscle and gut microbiota their interactions are poorly understood. Here, we investigated dynamics cumulative survival, quality, key phases chain: post-harvest, post-transport, post-respite, simulated sales [ambient temperature (AT; 29 °C ± 0.3 °C); low (LT; 23 °C)]. The results suggest that among various stages, highest mortality (12%) occurred...
Our aim was to demonstrate the significance of miRNA, lncRNA, and circRNA in transformation human bronchial epithelial cells induced by benzo(a)pyrene (BaP), investigate their regulatory networks. Hierarchical clustering, gene ontology (GO) analysis, Kyoto Encyclopedia Genes Genomes (KEGG) analysis network regulation were used analyze high-throughput sequencing results cell line BEAS-2B BaP-transformed (BEAS-2B-T). 76,191,786 3,431differentially-expressed mRNA detected, respectively; 43 48...
Vibrio parahaemolyticus causes serious seafood-borne gastroenteritis and death in humans. Raw seafood is often subjected to post-harvest processing low-temperature storage. To date, very little information available regarding the biological functions of cold shock proteins (CSPs) survival bacterium. In this study, we determined complete genome sequence V. CHN25 (serotype: O5:KUT). The two main CSP-encoding genes (VpacspA VpacspD) were deleted from bacterial genome, comparative transcriptomic...
The aim of this study was to explore the effects different density treatments on potato spatial distribution and yield in spring fall. Plant influenced composition, horizontal vertical distances between tubers, position tuber weights. results indicated that: (1) Spring had a convex quadratic curve relationship with density, highest value observed at 15.75 × 104 tubers per hectare. However, fall potatoes showed linear plant 18 hectare; (2) Density greater influence weight fruit number single...
Hepatitis B virus (HBV) infection is the main trigger of hepatocellular carcinoma (HCC). Circular RNA plays an indispensable role in cancer development, and this study aimed to disclose function mechanism circ_0027089 HBV-related HCC. The expression levels circ_0027089, miR-136-5p nucleus accumbens associated protein 1 (NACC1) mRNA were measured by quantitative real-time PCR, level NACC1 was detected western blot. For functional analyses, cell proliferation assessed counting kit-8 assay...