Gimano D. Amatngalim

ORCID: 0000-0003-3442-1754
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Research Areas
  • Neonatal Respiratory Health Research
  • Pediatric health and respiratory diseases
  • Cystic Fibrosis Research Advances
  • Asthma and respiratory diseases
  • Chronic Obstructive Pulmonary Disease (COPD) Research
  • Antimicrobial Peptides and Activities
  • Tracheal and airway disorders
  • Inhalation and Respiratory Drug Delivery
  • Respiratory viral infections research
  • Air Quality and Health Impacts
  • Immunodeficiency and Autoimmune Disorders
  • CRISPR and Genetic Engineering
  • SARS-CoV-2 and COVID-19 Research
  • Bacterial biofilms and quorum sensing
  • Epigenetics and DNA Methylation
  • Bacterial Genetics and Biotechnology
  • Pluripotent Stem Cells Research
  • Renal and related cancers
  • SARS-CoV-2 detection and testing
  • Neonatal and Maternal Infections
  • Evolution and Genetic Dynamics
  • Climate Change and Health Impacts
  • Gut microbiota and health
  • Inflammation biomarkers and pathways
  • Infection Control and Ventilation

Utrecht University
2018-2025

University Medical Center Utrecht
2018-2025

Wilhelmina Children's Hospital
2018-2025

Leiden University Medical Center
2012-2024

Leiden University
2010-2016

University of British Columbia
2010

Resource14 January 2019Open Access Transparent process Long-term expanding human airway organoids for disease modeling Norman Sachs Oncode Institute, Hubrecht Institute-KNAW and UMC Utrecht, The Netherlands Search more papers by this author Angelos Papaspyropoulos Domenique D Zomer-van Ommen Wilhelmina Children's Hospital Inha Heo Lena Böttinger Dymph Klay St. Antonius Nieuwegein, Fleur Weeber Cancer Amsterdam, Guizela Huelsz-Prince FOM Institute AMOLF, Nino Iakobachvili Maastricht...

10.15252/embj.2018100300 article EN cc-by-nc-nd The EMBO Journal 2019-01-14

The generation of protective secretory IgA relies on the epithelial polymeric immunoglobulin receptor (pIgR). pIgR expression is reduced in chronic obstructive pulmonary disease (COPD), but correlation to severity and underlying mechanisms remains unknown.To address hypothesis that down-regulation COPD concerns severe relation aberrant programming bronchial epithelium.Surgical lung tissue primary epithelium (cultured air-liquid interface, ALI) obtained from a large series patients (n = 116)...

10.1164/rccm.201311-1971oc article EN American Journal of Respiratory and Critical Care Medicine 2014-08-29

Mesenchymal stromal cells (MSCs) are investigated for their potential to reduce inflammation and repair damaged tissue. Inflammation tissue damage hallmarks of chronic obstructive pulmonary disease (COPD) MSC infusion is a promising new treatment COPD. Inflammatory mediators attract MSCs sites affect immune-modulatory properties, but little known about effect on regenerative properties MSCs. This study investigates the pro-inflammatory cytokines TNF-α IL-1β MSCs, using an in vitro wound...

10.1186/s12931-015-0316-1 article EN cc-by Respiratory Research 2016-01-11

Abstract Basal cells play a critical role in the response of airway epithelium to injury and are recently recognized also contribute epithelial immunity. Antimicrobial proteins peptides essential effector molecules this innate However, little is known about specific basal antimicrobial protein peptide production regulation ubiquitous RNase 7. In study, we report that principal cell type producing 7 cultured primary bronchial (PBEC). Exposure submerged PBEC (primarily consisting cells)...

10.4049/jimmunol.1402169 article EN The Journal of Immunology 2015-02-26

Antimicrobial proteins and peptides (AMPs) are a central component of the antibacterial activity airway epithelial cells. It has been proposed that decrease in lung defense contributes to an increased susceptibility microbial infection smokers patients with chronic obstructive pulmonary disease (COPD). However, whether reduced AMP expression epithelium this lower is largely unknown. We investigated bacterial killing AMPs by air-liquid interface-cultured primary bronchial cells from COPD...

10.1159/000455193 article EN Journal of Innate Immunity 2017-01-01

It is currently unknown how cigarette smoke-induced airway remodelling affects highly expressed respiratory epithelial defence proteins and thereby mucosal host defence. Localisation of a selected set was assessed in well-differentiated primary bronchial cell (PBEC) cultures. Next, PBEC were cultured at the air–liquid interface, during differentiation for 2–3 weeks exposed daily to whole smoke. Gene expression, protein levels markers subsequently assessed. In addition, functional activities...

10.1183/13993003.01009-2017 article EN European Respiratory Journal 2018-03-15

Cystic fibrosis is caused by genetic defects that impair the CFTR channel in airway epithelial cells. These may be overcome specific modulating drugs, for which efficacy can predicted a personalized manner using 3D nasal-brushing–derived organoids forskolin-induced swelling assay. Despite of this, previously described function assays were not fully optimal, because inefficient organoid differentiation and limited scalability. In this report, we therefore describe an alternative method...

10.26508/lsa.202101320 article EN cc-by Life Science Alliance 2022-08-03

Cigarette smoking is the main risk factor associated with chronic obstructive pulmonary disease (COPD), and contributes to COPD development progression by causing epithelial injury inflammation. Whereas it known that cigarette smoke (CS) may affect innate immune function of airway cells repair, this has so far not been explored in an integrated design using mucociliary differentiated cells. In study, we examined effect whole CS exposure on wound repair activity primary bronchial cells, upon...

10.1371/journal.pone.0166255 article EN cc-by PLoS ONE 2016-11-09

Activin-A is a pleiotropic cytokine belonging to the transforming growth factor-β superfamily and has been implicated in asthma pulmonary fibrosis. However, role of activin-A its endogenous inhibitor, follistatin, pathogenesis chronic obstructive disease (COPD) unknown. We first quantified follistatin lungs air- or cigarette smoke-exposed mice patients with COPD by immunohistochemistry, ELISA quantitative real-time PCR. subsequently studied effect smoke on primary human bronchial epithelial...

10.1183/09031936.00082413 article EN European Respiratory Journal 2013-11-14

Section:ChooseTop of pageAbstract <<Materials and MethodsResultsDiscussionReferencesCITING ARTICLES

10.1165/rcmb.2016-0289oc article EN American Journal of Respiratory Cell and Molecular Biology 2017-02-23

Pseudomonas aeruginosa is a Gram-negative bacterium that notorious for airway infections in cystic fibrosis (CF) subjects. Bacterial quorum sensing (QS) coordinates virulence factor expression and biofilm formation at population level. Better understanding of QS the bacterium-host interaction required. Here, we set up new P. infection model, using 2D upper nasal organoids were derived from 3D organoids. Using dual RNA-sequencing, dissected between organoid epithelial cells WT or QS-mutant...

10.1038/s41598-024-82500-w article EN cc-by-nc-nd Scientific Reports 2025-01-17

Aberrant activity of a disintegrin and metalloprotease 17 (ADAM17), also known as TACE, epidermal growth factor receptor (EGFR) has been suggested to contribute chronic obstructive pulmonary disease (COPD) development progression. The aim this study was investigate the role these proteins in activation primary bronchial epithelial cells differentiated at air-liquid interface (ALI-PBEC) by whole cigarette smoke (CS), comparing from COPD patients with non-COPD CS exposure ALI-PBEC enhanced...

10.14814/phy2.12878 article EN cc-by Physiological Reports 2016-08-01

The nasal cavity displays immune tolerance to commensal bacteria under homeostatic conditions, which is rapidly converted a pro-inflammatory response upon infection. Yet, the factors that control this conversion are still largely unknown. Here, we provide evidence Fc gamma receptor III (FcγRIII) stimulation breaks in human through activation of epithelial cells, first line defense against invading microbes. While steady-state conditions cells were completely non-responsive Gram-negative P....

10.1038/s41385-018-0129-x article EN cc-by Mucosal Immunology 2019-01-21

INTRODUCTION Our lungs have a vital role in mediating the exchange of oxygen and carbon dioxide between air we breathe body. This function is under constant pressure as inhaled contains numerous particles, gasses, microorganisms that may cause injury infection to lungs. Removal neutralization potential harmful substances from main airway epithelium. pseudo-stratified layer cells covers surface conducting airways plays an important protecting alveoli, where gas takes place, injury. The...

10.4103/0366-6999.230743 article EN cc-by-nc-nd Chinese Medical Journal 2018-04-20

We present a protocol to generate organoids from air-liquid-interface (ALI)-differentiated nasal epithelia. detail their application as cystic fibrosis (CF) disease model in the transmembrane conductance regulator (CFTR)-dependent forskolin-induced swelling (FIS) assay. describe steps for isolation, expansion and cryostorage of brushing-derived basal progenitor cells, differentiation ALI cultures. Furthermore, we conversion differentiated epithelial fragments into healthy controls CF...

10.1016/j.xpro.2023.102337 article EN cc-by STAR Protocols 2023-06-12

<title>Abstract</title> Although vaccines and treatments have strengthened our ability to combat the COVID-19 pandemic, new variants of SARS-CoV-2 continue emerge in human populations. Because evolution is driven by mutation, a better understanding its mutation rate spectrum could improve forecast trajectory pandemic. Here, we used circular RNA consensus sequencing (CirSeq) determine six performed short-term experiment impact these mutations on viral fitness. Our analyses indicate that...

10.21203/rs.3.rs-4578618/v1 preprint EN Research Square (Research Square) 2024-07-03

Individuals with cystic fibrosis (CF) suffer from severe respiratory disease due to a genetic defect in the transmembrane conductance regulator (CFTR) gene, which impairs airway epithelial ion and fluid secretion. New CFTR modulators that restore mutant function have been recently approved for large group of people CF (pwCF), but ~19% pwCF cannot benefit Restoration secretion through non-CFTR pathways might be an effective treatment all pwCF. Here, we developed medium-throughput 384-well...

10.3390/ijms232012657 article EN International Journal of Molecular Sciences 2022-10-21

In cystic fibrosis (CF), defects in the CF transmembrane conductance regulator (CFTR) channel lead to an acidic airway surface liquid (ASL), which compromises innate defence mechanisms, predisposing pulmonary failure. Restoring ASL pH is a potential therapy for people with CF, particularly those who cannot benefit from current highly effective modulator therapy. However, we lack comprehensive understanding of complex mechanisms underlying regulation. The calcium-activated chloride channel,...

10.1073/pnas.2307551120 article EN cc-by Proceedings of the National Academy of Sciences 2023-11-15

Abstract A better understanding of host cell remodeling by the coronavirus SARS-CoV-2 is urgently needed to understand viral pathogenesis and guide drug development. Expression profiling electron microscopy have frequently been used study virus-host interactions, but these techniques do not readily enable spatial, sub-cellular molecular analysis specific cellular compartments. Here, we use diffraction-unlimited fluorescence analyze how infection exploits repurposes subcellular architecture...

10.1101/2021.08.05.455126 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2021-08-05

Recurrent respiratory syncytial virus (RSV) infection requiring hospitalization is rare and the underlying mechanism unknown. We aimed to determine role of CD14-mediated immunity in pathogenesis recurrent RSV infection.We performed genotyping longitudinal immunophenotyping first patient with a genetic CD14 deficiency who developed infection. analyzed gene expression profiles interleukin (IL)-6 production by peripheral blood mononuclear cells response pre- post-fusion (F) protein. generated...

10.1093/infdis/jiac114 article EN cc-by The Journal of Infectious Diseases 2022-04-15
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