Alexander J. Robertson

ORCID: 0000-0003-4607-4470
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About
Contact & Profiles
Research Areas
  • SARS-CoV-2 and COVID-19 Research
  • SARS-CoV-2 detection and testing
  • COVID-19 Clinical Research Studies
  • Target Tracking and Data Fusion in Sensor Networks
  • Distributed Sensor Networks and Detection Algorithms
  • Biosensors and Analytical Detection
  • Advanced Statistical Methods and Models
  • Animal Virus Infections Studies
  • Scottish History and National Identity
  • Historical Economic and Social Studies
  • Machine Learning in Healthcare
  • Viral gastroenteritis research and epidemiology
  • Immunodeficiency and Autoimmune Disorders
  • Sparse and Compressive Sensing Techniques
  • Long-Term Effects of COVID-19
  • Energy Efficient Wireless Sensor Networks
  • Fault Detection and Control Systems
  • Optimization and Search Problems
  • Indoor and Outdoor Localization Technologies
  • Guidance and Control Systems
  • Tuberculosis Research and Epidemiology
  • Metabolomics and Mass Spectrometry Studies

Yale University
2021-2022

TRW Automotive (United States)
2001

Colorado State University
1995

University of British Columbia
1965

Carolina Lucas Jon Klein Maria E. Sundaram Feimei Liu Patrick Wong and 95 more Julio Silva Tianyang Mao Ji Eun Oh Subhasis Mohanty Jiefang Huang Maria Tokuyama Peiwen Lu Arvind Venkataraman Annsea Park Benjamin Israelow Chantal B. F. Vogels M. Catherine Muenker C‐Hong Chang Arnau Casanovas‐Massana Adam J. Moore Joseph Zell John Fournier Abeer Obaid Alexander J. Robertson Alice Lu-Culligan Alice Zhao Allison Nelson Anderson F. Brito Ángela Núñez Anjelica Martin Anne E. Watkins Bertie Geng Caitlin J. Chun Chaney C. Kalinich Christina A. Harden Codruta Todeasa Cole Jensen Coriann E. Dorgay Daniel Kim David McDonald Denise Shepard Edward Courchaine Elizabeth B. White Eric Song Erin Silva Eriko Kudo Giuseppe DeIuliis Harold Rahming Hong‐Jai Park Irene Matos Isabel M. Ott Jessica Nouws Jordan Valdez Joseph R. Fauver Joseph K. Lim Kadi-Ann Rose Kelly Anastasio Kristina Brower Laura Glick Lokesh Sharma Lorenzo R. Sewanan Lynda Knaggs Maksym Minasyan Maria Batsu Mary E. Petrone Maxine Kuang Maura Nakahata Melissa Linehan Michael H. Askenase Michael Simonov Mikhail Smolgovsky Natasha C. Balkcom Nicole Sonnert Nida Naushad Pavithra Vijayakumar Rick Martinello Rupak Datta Ryan Handoko Santos Bermejo Sarah Prophet Sean Bickerton Sofia Velazquez Tara Alpert Tyler Rice William Khoury-Hanold Xiaohua Peng Yexin Yang Yiyun Cao Yvette Strong Zitong Lin Anne L. Wyllie Melissa Campbell Alfred Ian Lee Hyung J. Chun Nathan D. Grubaugh Wade L. Schulz Shelli Farhadian Charles S. Dela Cruz Aaron M. Ring Albert C. Shaw

10.1038/s41591-021-01355-0 article EN other-oa Nature Medicine 2021-05-05

Abstract SARS-CoV-2 remdesivir resistance mutations have been generated in vitro but not reported patients receiving treatment with the antiviral agent. We present a case of an immunocompromised patient acquired B-cell deficiency who developed indolent, protracted course infection. Remdesivir therapy alleviated symptoms and produced transient virologic response, her was complicated by recrudescence high-grade viral shedding. Whole genome sequencing identified mutation, E802D, nsp12...

10.1038/s41467-022-29104-y article EN cc-by Nature Communications 2022-03-17

10.1023/a:1008669120497 article EN Computational Optimization and Applications 1997-01-01

As Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) continues to spread, characterization of its antibody epitopes, emerging strains, related coronaviruses, and even the human proteome in naturally infected patients can guide development effective vaccines therapies. Since traditional epitope identification tools are dependent upon pre-defined peptide sequences, they not readily adaptable diverse viral proteomes. The Serum Epitope Repertoire Analysis (SERA) platform leverages a...

10.1038/s42003-021-02835-2 article EN cc-by Communications Biology 2021-11-22

10.1023/a:1011285402433 article EN Computational Optimization and Applications 2001-01-01

Abstract Background The benefit of vaccination in people who experienced a prior SARS-CoV-2 infection remains unclear. Objective To estimate the effectiveness primary (two-dose) and booster (third dose) against Omicron among with documented infection. Design Test-negative case-control study. Setting Yale New Haven Health System facilities. Participants Vaccine eligible received RT-PCR testing between November 1, 2021, January 31, 2022. Measurements We conducted two analyses, each an outcome...

10.1101/2022.04.19.22274056 preprint EN medRxiv (Cold Spring Harbor Laboratory) 2022-04-20

Background The benefit of primary and booster vaccination in people who experienced a prior Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection remains unclear. objective this study was to estimate the effectiveness (two-dose series) (third dose) mRNA against Omicron (lineage BA.1) among with documented infection. Methods findings We conducted test-negative case–control reverse transcription PCRs (RT-PCRs) analyzed TaqPath (Thermo Fisher Scientific) assay recorded Yale New...

10.1371/journal.pmed.1004136 article EN cc-by PLoS Medicine 2022-12-01

Abstract Over the last century, outbreaks and pandemics have occurred with disturbing regularity, necessitating advance preparation large-scale, coordinated response. Here, we developed a machine learning predictive model of disease severity length hospitalization for COVID-19, which can be utilized as platform future unknown viral outbreaks. We combined untargeted metabolomics on plasma data obtained from COVID-19 patients (n = 111) during healthy controls 342), clinical comorbidity 508) to...

10.1186/s40246-023-00521-4 article EN cc-by Human Genomics 2023-08-29

Abstract SARS-CoV-2 remdesivir resistance mutations have been generated in vitro but not reported patients receiving treatment with the antiviral agent. We present a case of an immunocompromised patient acquired B-cell deficiency who developed indolent, protracted course infection. Remdesivir therapy alleviated symptoms and produced transient virologic response, her was complicated by recrudescence high-grade viral shedding. Whole genome sequencing identified mutation, E802D, nsp12...

10.1101/2021.11.08.21266069 preprint EN medRxiv (Cold Spring Harbor Laboratory) 2021-11-09

The Centers for Disease Control and Prevention recommends serial rapid antigen assay collection within congregate facilities. Although modeling observational studies from communities long-term care facilities have shown provides adequate sensitivity specificity, the accuracy correctional remains unknown.Using Connecticut Department of Correction data 21 November 2020 to 15 June 2021, we estimated a assay, BinaxNOW (Abbott), under 3 strategies: single test 2 tests separated by 1-4 days....

10.1093/cid/ciac450 article EN Clinical Infectious Diseases 2022-06-10

Large classes of data association problems in multiple hypothesis tracking applications involving and single sensor systems can be formulated as multidimensional assignment problems. Lagrangian relaxation methods have been shown to solve these the noise level problem real-time, especially for dense scenarios scans from sensors. This work presents a new class algorithms that circumvent some shortcomings previous algorithms. The computational complexity is via numerical examples linear number...

10.1117/12.217718 article EN Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE 1995-07-28

Large classes of data association problems in multiple hypothesis tracking applications, including sensorfusion, can be formulated as multidimensional assignment problems. Lagrangian relaxation methods have beenshown to solve these the noise level problem real-time, especially for dense scenarios andfor scans from sensors. This work presents a new class algorithms that circumventthe difficulties similar previous algorithms. The computational complexity is shownvia some numerical examples...

10.1117/12.213069 article EN Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE 1995-05-05

Abstract Background The CDC recommends serial rapid antigen assay collection within congregate facilities for screening and outbreak testing. Though modeling observational studies from community long-term care have shown provides adequate sensitivity specificity, the diagnostic accuracy of this testing strategy correctional remains unknown. Methods Using Connecticut Department Corrections (DOC) data November 21 st 2020 to June 15 th 2021, we estimated a assay, BinaxNOW, under three...

10.1101/2022.03.03.22271803 preprint EN medRxiv (Cold Spring Harbor Laboratory) 2022-03-06
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