Richard Berthomé

ORCID: 0000-0003-4781-6210
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About
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Research Areas
  • Plant-Microbe Interactions and Immunity
  • Plant Pathogenic Bacteria Studies
  • Photosynthetic Processes and Mechanisms
  • Legume Nitrogen Fixing Symbiosis
  • Plant Virus Research Studies
  • Plant Molecular Biology Research
  • Plant nutrient uptake and metabolism
  • Plant pathogens and resistance mechanisms
  • Plant Stress Responses and Tolerance
  • Plant tissue culture and regeneration
  • Plant Reproductive Biology
  • Plant Parasitism and Resistance
  • Transgenic Plants and Applications
  • Plant Micronutrient Interactions and Effects
  • CRISPR and Genetic Engineering
  • Plant Pathogens and Fungal Diseases
  • Mitochondrial Function and Pathology
  • RNA modifications and cancer
  • Microbial bioremediation and biosurfactants
  • Lipid metabolism and biosynthesis
  • Banana Cultivation and Research
  • Biological and pharmacological studies of plants
  • Pesticide and Herbicide Environmental Studies
  • Evolution and Genetic Dynamics
  • Coastal wetland ecosystem dynamics

Centre National de la Recherche Scientifique
2011-2024

Université de Toulouse
2016-2024

Laboratoire des Interactions Plantes Micro-Organismes
1998-2024

Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
2008-2024

Institut National Polytechnique de Toulouse
2017-2022

Université Toulouse III - Paul Sabatier
2021-2022

Université Paris-Saclay
2017-2020

Institut des Sciences des Plantes de Paris Saclay
2016-2020

Université Paris Cité
2017-2020

Institut Jean-Pierre Bourgin
2000-2017

Abstract Nitrogen (N) is an essential macronutrient for plants. N levels in soil vary widely, and plants have developed strategies to cope with deficiency. However, the regulation of these adaptive responses coordinating signals that underlie them are still poorly understood. The aim this study was characterize starvation adult Arabidopsis (Arabidopsis thaliana) a spatiotemporal manner by integrative, multilevel global approach analyzing growth, metabolites, enzyme activities, transcript...

10.1104/pp.111.179838 article EN PLANT PHYSIOLOGY 2011-09-07

After transcription, mRNA editing in angiosperm chloroplasts and mitochondria results the conversion of cytidine to uridine by deamination. Analysis Arabidopsis thaliana mutants affected RNA have shown that many pentatricopeptide repeat proteins (PPRs) are required for specific deamination events. PPR been be sequence-specific binding allowing recognition C edited. The C-terminal DYW domain present factors has proposed catalyze deamination, as it shows sequence similarities with deaminases...

10.1105/tpc.112.099507 article EN The Plant Cell 2012-09-01

RNA editing is converting hundreds of cytosines into uridines during organelle gene expression land plants. The pentatricopeptide repeat (PPR) proteins are at the core this posttranscriptional modification. Even if a PPR protein defines site, DYW domain same or another believed to catalyze deamination. To give insight editosome, we performed tandem affinity purification plastidial CHLOROPLAST BIOGENESIS 19 (CLB19) factor. Two proteins, dually targeted mitochondria and chloroplasts, were...

10.1073/pnas.1705780114 article EN Proceedings of the National Academy of Sciences 2017-07-31

The root cap has a fundamental role in sensing environmental cues as well regulating growth via altered meristem activity. Despite this well-established the control of developmental processes roots, cap's function nutrition remains obscure. Here, we uncover its phosphate by targeted cellular inactivation or transport complementation Arabidopsis, using transactivation strategy with an innovative high-resolution real-time (33)P imaging technique. Remarkably, diminutive size cells at...

10.7554/elife.14577 article EN cc-by eLife 2016-04-05

Four hundred and fifty-eight genes coding for PentatricoPeptide Repeat (PPR) proteins are annotated in the Arabidopsis thaliana genome. Over past 10 years, numerous reports have shown that many of these function organelles to target specific transcripts involved post-transcriptional regulation. Therefore, they thought be important players coordination between nuclear organelle genome expression. Only four been described addressed outside organelles, indicating some PPRs could regulations...

10.4161/rna.26128 article EN RNA Biology 2013-09-01

Hydathodes are water pores found on leaves of a wide range vascular plants and the sites guttation. We report here detailed anatomy cauliflower (Brassicaoleracea) Arabidopsis (Arabidopsis thaliana) hydathodes. Hydathode surface presents resembling stomata giving access to large cavities. Beneath, epithem is composed lacunar highly vascularized parenchyma offering direct connection between leaf xylem vessels. hydathode were responsive ABA light similar stomata. The flg22 flagellin peptide,...

10.1104/pp.16.01852 article EN PLANT PHYSIOLOGY 2017-02-09

To understand how the identity of an organ can be switched, we studied transformation lateral root primordia (LRP) into shoot meristems in Arabidopsis segments. In this system, cytokinin-induced conversion does not involve formation callus-like structures. Detailed analysis showed that sequence starts with a mitotic pause and is concomitant differential expression regulators development. The requires presence apical stem cells, only LRP at stages VI or VII switched. It engaged as soon cell...

10.1242/dev.142570 article EN Development 2017-02-08

Summary Uridine nucleotides can be formed by energy‐consuming de novo synthesis or the energy‐saving recycling of nucleobases resulting from nucleotide catabolism. Uracil phosphoribosyltransferases (UPRTs; EC 2.4.2.9) are involved in salvage pyrimidines catalyzing formation uridine monophosphate (UMP) uracil and phosphoribosylpyrophosphate. To date, UPRTs described as non‐essential, enzymes. In present work, six genes annotated Arabidopsis genome examined through phylogenetic functional...

10.1111/j.1365-313x.2009.03963.x article EN The Plant Journal 2009-06-29

In the context of climate warming, plants will be facing an increased risk epidemics as well emergence new highly aggressive pathogen species. Although a permanent increase temperature strongly affects plant immunity, underlying molecular mechanisms involved are still poorly characterized. this study, we aimed to uncover genetic bases resistance remaining efficient at elevated Ralstonia solanacearum species complex (RSSC), one most harmful phytobacteria causing bacterial wilt. To start...

10.3389/fpls.2017.01387 article EN cc-by Frontiers in Plant Science 2017-08-22

Quantitative disease resistance (QDR) remains the most prevalent form of plant in crop fields and wild habitats. Genome-wide association studies (GWAS) have proved to be successful deciphering quantitative genetic basis complex traits such as QDR. To unravel genetics QDR devastating worldwide bacterial pathogen Ralstonia solanacearum, we performed a GWAS by challenging highly polymorphic local mapping population Arabidopsis thaliana with four R. solanacearum type III effector (T3E) mutants,...

10.1016/j.xplc.2023.100607 article EN cc-by-nc-nd Plant Communications 2023-04-25

Abstract Plant immunity is often negatively impacted by heat stress. However, the underlying molecular mechanisms remain poorly characterized. Based on a genome‐wide association mapping approach, this study aims to identify in Arabidopsis thaliana genetic bases of robust resistance devastating pathogen Ralstonia solanacearum under A local population was phenotyped against R. GMI1000 strain at 27 and 30 °C. To obtain precise description architecture natural variation quantitative disease...

10.1111/mpp.12964 article EN cc-by Molecular Plant Pathology 2020-09-11

C to U editing is one of the post-transcriptional steps which are required for proper expression chloroplast and mitochondrial genes in plants. It depends on several proteins acting together include PLS-class pentatricopeptide repeat (PPR). DYW2 was recently shown be many sites both organelles. In particular almost all associated with E+ subfamily PPR depending DYW2, suggesting that function E+-type proteins. Here we strengthened this link by identifying 16 major controlled 3 proteins:...

10.3390/plants9020280 article EN cc-by Plants 2020-02-21

Xanthomonas campestris pv. (Xcc) is a seed-transmitted vascular pathogen causing black rot disease on cultivated and wild Brassicaceae. Xcc enters the plant tissues preferentially via hydathodes, which are organs localized at leaf margins. To decipher both physiological virulence strategies deployed by during early stages of infection, transcriptomic profile was analysed 3 days after entry into cauliflower hydathodes. Despite absence visible tissue alterations despite biotrophic lifestyle,...

10.1111/mpp.13117 article EN Molecular Plant Pathology 2021-11-26

Abstract Ralstonia solanacearum gram‐negative phytopathogenic bacterium exerts its virulence through a type III secretion system (T3SS) that translocates effectors (T3Es) directly into the host cells. T3E is finely controlled at posttranslational level by helper proteins, T3SS control and chaperones. The HpaP protein, one of substrate specificity switch (T3S4) was previously highlighted as factor on Arabidopsis thaliana Col‐0 accession. In this study, we set up genome‐wide association...

10.1111/mpp.13135 article EN cc-by-nc-nd Molecular Plant Pathology 2021-12-23
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