Ekaterina Petrova

ORCID: 0000-0001-8059-5101
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About
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Research Areas
  • Advancements in Photolithography Techniques
  • bioluminescence and chemiluminescence research
  • Advanced X-ray Imaging Techniques
  • RNA Interference and Gene Delivery
  • Particle Accelerators and Free-Electron Lasers
  • Advanced biosensing and bioanalysis techniques
  • Monoclonal and Polyclonal Antibodies Research
  • 3D Printing in Biomedical Research
  • Gyrotron and Vacuum Electronics Research
  • Viral Infectious Diseases and Gene Expression in Insects
  • Neuroscience and Neural Engineering
  • Prion Diseases and Protein Misfolding
  • T-cell and B-cell Immunology
  • CRISPR and Genetic Engineering
  • Infrared Thermography in Medicine
  • Microfluidic and Bio-sensing Technologies
  • Cell Image Analysis Techniques
  • Advanced optical system design
  • Particle accelerators and beam dynamics
  • Surface Roughness and Optical Measurements
  • Animal Ecology and Behavior Studies
  • Brucella: diagnosis, epidemiology, treatment
  • Advanced Surface Polishing Techniques
  • Optical Coatings and Gratings
  • Medical and Biological Ozone Research

Karolinska Institutet
2014-2024

École Polytechnique Fédérale de Lausanne
2015-2019

Russian Academy of Sciences
2008-2012

Budker Institute of Nuclear Physics
2007-2009

Abstract Insulin binds the insulin receptor (IR) and regulates anabolic processes in target tissues. Impaired IR signalling is associated with multiple diseases, including diabetes, cancer neurodegenerative disorders. IRs have been reported to form nanoclusters at cell membrane several types, even absence of binding. Here we exploit nanoscale spatial organization achieve controlled multivalent activation. To control valency, developed rod-like insulin–DNA origami nanostructures carrying...

10.1038/s41565-023-01507-y article EN cc-by Nature Nanotechnology 2023-10-09

Through the use of optical tweezers we performed controlled translocations DNA–protein complexes through nanocapillaries. We used RNA polymerase (RNAP) with two binding sites on a 7.2 kbp DNA fragment and dCas9 protein tailored to have five λ-DNA (48.5 kbp). Measured localization showed shift from expected positions that explained using both analytical fitting stochastic model. From measured force versus stage curves extracted nonequilibrium work done during translocation complex it obtain...

10.1021/acs.nanolett.6b04165 article EN Nano Letters 2016-11-07

The capability to rapidly design proteins with novel functions will have a significant impact on medicine, biotechnology and synthetic biology. Synthetic genes are becoming commodity, but integrated approaches yet be developed that take full advantage of gene synthesis. We solid-phase synthesis method based asymmetric primer extension (APE) coupled this process directly high-throughput, on-chip protein expression, purification characterization (via mechanically induced trapping molecular...

10.1093/nar/gkv1497 article EN cc-by-nc Nucleic Acids Research 2015-12-23

Synthetically engineered cells are powerful and potentially useful biosensors, but it remains problematic to deploy such systems due practical difficulties biosafety concerns. To overcome these hurdles, we developed a microfluidic device that serves as an interface between cellular system, environment, user. We created biodisplay consisting of 768 individually programmable biopixels demonstrated can perform multiplexed, continuous sampling. The detected 10 μg/L sodium-arsenite in tap water...

10.1021/acssynbio.7b00088 article EN ACS Synthetic Biology 2017-08-03

10.1016/j.nima.2008.12.147 article EN Nuclear Instruments and Methods in Physics Research Section A Accelerators Spectrometers Detectors and Associated Equipment 2009-01-04

ABSTRACT Autoimmune diseases, driven by Fcγ receptor (FcγR) activation through autoantibody immune complexes (IC), present a complex therapeutic challenge of achieving pharmacological blockade FcγR without triggering activation. The assembly ICs into polydisperse, higher-order structures is required for However, engineered multimeric, monodisperse Fc assemblies have been reported to prevent activation, suggesting that spatial organization determines In this study, we functional single-chain...

10.1101/2024.01.20.576357 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2024-01-23

Application of dynamic X-ray lithography for originating continuous-relief diffractive optical elements and microoptics has been investigated. The method is based on action irradiation passed through fixed mask with triangle-like openings to periodically moved PMMA wafer. samples were exposed synchrotron radiation facility VEPP-3 (BINP SB RAS, Novosibirsk) then etched in liquid developer form surface relief. Advances limitations the have discussed. moving wafer fabrication gradient demonstrated.

10.1117/12.797728 article EN Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE 2008-09-19

In this paper we report about initiating technological development of thick metal mesh structures intended for frequency filtration high-power terahertz radiation Novosibirsk free electron laser. The technology is based on the promising LIGA-technique which employs effect high penetrability X-rays into roentgenosensitive resistive layers and destined manufacturing microstructures with extremely aspect ratios. Due to metallization thickness comparable wavelength LIGA-structures are expected...

10.1109/icimw.2007.4516817 article EN 2007-09-01

The capability to rapidly design proteins with novel functions will have a significant impact on medicine, biotechnology, and synthetic biology. Synthetic genes are becoming commodity, but integrated approaches yet be developed that take full advantage of gene synthesis. We solid-phase synthesis method based asymmetric primer extension (APE) coupled this process directly high-throughput, on-chip protein expression, purification, characterization (mechanically induced trapping molecular...

10.1101/025239 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2015-08-21

Abstract Synthetically engineered cells are powerful and potentially useful biosensors, but it remains problematic to deploy such systems due practical difficulties biosafety concerns. To overcome these hurdles, we developed a microfluidic device that serves as an interface between cellular system, environment, user. We created biodisplay consisting of 768 individually programmable biopixels demonstrated can perform multiplexed, continuous sampling. The detected 10 µg/l sodium-arsenite in...

10.1101/112110 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2017-02-27
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