Xiu‐Qun Liu

ORCID: 0000-0001-9655-6406
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About
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Research Areas
  • Horticultural and Viticultural Research
  • Plant and animal studies
  • Plant Diversity and Evolution
  • Fermentation and Sensory Analysis
  • Plant and Fungal Species Descriptions
  • Plant Pathogens and Fungal Diseases
  • Genomics and Phylogenetic Studies
  • Natural product bioactivities and synthesis
  • Fern and Epiphyte Biology
  • Genetic diversity and population structure
  • Paleontology and Stratigraphy of Fossils
  • Plant Parasitism and Resistance
  • Plant biochemistry and biosynthesis
  • Wine Industry and Tourism
  • Chromosomal and Genetic Variations
  • Plant Ecology and Taxonomy Studies
  • Plant Molecular Biology Research
  • Animal Nutrition and Physiology
  • Hymenoptera taxonomy and phylogeny
  • Silkworms and Sericulture Research
  • Paleontology and Evolutionary Biology
  • Biological Activity of Diterpenoids and Biflavonoids
  • Chromatography in Natural Products
  • Plant and Fungal Interactions Research
  • Ecology and Conservation Studies

Huazhong Agricultural University
2010-2025

National Museum of Natural History
2021

Chinese Academy of Sciences
2005-2006

Institute of Botany
2005-2006

Wintersweet (Chimonanthus praecox), an important ornamental plant, has evolved unique fragrant aroma and winter-flowering properties, which are critical for its successful sexual reproduction. However, the molecular mechanisms underlying these traits largely unknown in this species. In addition, wintersweet is also a typical representative species of magnoliids, where phylogenetic position relative to eudicots monocots not been conclusively resolved.Here, we present chromosome-level genome...

10.1186/s13059-020-02088-y article EN cc-by Genome biology 2020-08-10

Abstract Vitaceae (the grape family) consist of 16 genera and ca. 950 species primarily distributed in tropical regions. The family is well‐known for the economic importance grapes, also ecologically significant with many as dominant climbers temperate forests. Recent phylogenetic phylogenomic analyses sequence data from all three genomes have supported five major clades within Vitaceae: (i) clade Ampelopsis , Nekemias Rhoicissus Clematicissus ; (ii) Cissus clade; (iii) Cayratia Causonis...

10.1111/jse.12427 article EN publisher-specific-oa Journal of Systematics and Evolution 2018-05-22

Abstract With the decreasing cost and availability of many newly developed bioinformatics pipelines, next‐generation sequencing (NGS) has revolutionized plant systematics in recent years. Genome skimming been widely used to obtain high‐copy fractions genomes, including plastomes, mitochondrial DNA (mtDNA), nuclear ribosomal (nrDNA). In this study, through simulations, we evaluated optimal (minimum) depth performance for recovering single‐copy genes (SCNs) from genome data, by subsampling...

10.1111/jse.12806 article EN Journal of Systematics and Evolution 2021-07-21

The north temperate region was characterized by a warm climate and rich thermophilic flora before the Eocene, but early diversifications of biome under global change shift remain uncertain. Moreover, it is becoming clear that hybridization/introgression an important driving force speciation in plant diversity. Here, we applied analyses from biogeography phylogenetic networks to account for both introgression incomplete lineage sorting based on genomic data New World Vitis, charismatic...

10.1111/jipb.13466 article EN Journal of Integrative Plant Biology 2023-02-11

Chelonopsis is a small genus endemic to East Asia. In this study, new species, C. guchengensis , from Nanhe National Nature Reserve, Gucheng County, Hubei Province described and illustrated. Molecular phylogenetic analyses based on two nuclear ribosomal DNA regions (ETS ITS) five plastid markers ( trnL intron, - trnF trnS trnG psbA trnH rps16 ) were carried out explore the position of species. A close relationship between species giraldii supported by molecular morphological evidence....

10.3897/phytokeys.253.145834 article EN cc-by PhytoKeys 2025-03-17

Abstract Reticulate evolution is an important driving force of angiosperm evolution. It has been proposed as evolutionary process in Vitis L. subgenus . Events natural hybridization and introgression several taxa native to North America have hypothesized discussed. However, there no convincing evidence reticulate reported for closely related from East Asia. We aim explore among four Asia ( V amurensis Ruprecht, romanetii Romanet du Caillaud, shenxiensis C. Li, piasezkii Maximowicz) with the...

10.1111/jse.12444 article EN Journal of Systematics and Evolution 2018-06-15

Abstract East Asian wild grapes show a high level of species diversity and have been widely recognized as important germplasm resources wine, table grapes, resistance to biotic abiotic stresses for the grape industry. However, deeper phylogenetic relationships drivers diversification Vitis remain poorly understood. Hybridization introgression events are not well investigated, particularly at genome‐wide scale. The herein explored using nuclear plastid genome data based on target enrichment...

10.1111/jse.12918 article EN Journal of Systematics and Evolution 2022-10-08

Euonymus maackii Rupr. is a small deciduous tree belonging to family Celastraceae. It an important ornamental and potential medicinal plant resource. Here, we assembled annotated the chloroplast (cp) genome of E. maackii. By combining this with seven available cp genomes from species, performed plastome variation analysis Euonymus. Furthermore, reconstructed phylogenetic estimated differentiation time The newly was 157,551 bp in size had typical quadripartite structure, which consisted one...

10.3390/f13020265 article EN Forests 2022-02-08

Abstract Investigation of the Mesozoic seed plant Leptostrobus Heer from Yangcaogou Formation Late Triassic and Yixian Early Cretaceous, Liaoning Province, China, provides new insight into its general morphology geographical distribution. The materials L. cancer described herein are later than all past findings this species add to record during Cretaceous. Based on well‐preserved specimens, specific diagnosis is slightly emended reconstruction perfected. placed in sphaericus. In addition, we...

10.1111/j.1744-7909.2006.00137.x article EN Journal of Integrative Plant Biology 2006-02-01

A well-preserved pollen cone of the genus Ginkgo was found in Yixian Formation (Early Cretaceous) Liaoning Province, China, and is described as new species liaoningensis. The cone, catkin-like, consists a main axis bearing scales at its base spirally arranged sporophylls 3–4 (−2) oval or elliptical sporangia. sporangia are pendulous dehiscent by longitudinal slit. mature grains monocolpate elongate-elliptical, juvenile tetrad stage. characteristics G. liaoningensis very similar to those...

10.1111/j.1095-8339.2006.00547.x article EN Botanical Journal of the Linnean Society 2006-10-10

Abstract With the decreasing cost and availability of many newly developed bioinformatics pipelines, next-generation sequencing (NGS) has revolutionized plant systematics in recent years. Genome skimming been widely used to obtain high-copy fractions genomes, including plastomes, mitochondrial DNA (mtDNA), nuclear ribosomal (nrDNA). In this study, through simulations, we evaluated optimal (minimum) depth performance for recovering single-copy genes (SCNs) from genome data, by subsampling...

10.1101/2021.02.25.432805 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2021-02-26

Chimonanthus of Calycanthaceae is a small endemic genus in China, with unusual winter-blooming sweet flowers widely cultivated for ornamentals and medicinal uses. The evolution plastomes its phylogenetic relationships remain unresolved due to limited availability genetic resources. Here, we report fully assembled annotated chloroplast genomes five species. the (size range 153,010 - 153,299 bp) reveal high similarities gene content, order, GC codon usage, amino acid frequency, simple sequence...

10.3389/fgene.2021.709996 article EN cc-by Frontiers in Genetics 2021-11-30

Study of gymnospermous pollen cones, identified with Sorosaccus gracilis Harris 1935, from the Yangcaogou Formation, Late Triassic China, has led to identification new and significant characteristics species. The specimens show distinct variations in morphology distal laminar portions microsporophylls. These well- preserved fossils are helpful elucidating, reconstructing revising diagnostic features S. gracilis. After comparing China those sibiricus Prynada 1962, cones which were...

10.1360/aps050005 article EN Acta Phytotaxonomica Sinica 2005-01-01

<title>Abstract</title> Wintersweet (<italic>Chimonanthus praecox</italic>) is a traditional Chinese ornamental plant that produces showy yellow flowers in winter. In addition to the common yellow-flowered variety group, there wintersweet group unusual yellow-green tepals. Up now, mechanisms underlying coloration of tepals are unknown. this study, results chlorophyll content determination experiment showed 'H37' (yellow-green variety) was significantly higher than 'H25' (yellow variety);...

10.21203/rs.3.rs-4743541/v1 preprint EN cc-by Research Square (Research Square) 2024-09-02
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