Chao Qin

ORCID: 0000-0002-1741-4790
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About
Contact & Profiles
Research Areas
  • Plant Pathogens and Fungal Diseases
  • Plant Reproductive Biology
  • Genetic diversity and population structure
  • Plant Physiology and Cultivation Studies
  • Ecology and Conservation Studies
  • Metabolomics and Mass Spectrometry Studies
  • Genetic Mapping and Diversity in Plants and Animals
  • Cancer, Lipids, and Metabolism
  • RNA and protein synthesis mechanisms
  • ATP Synthase and ATPases Research
  • Rice Cultivation and Yield Improvement
  • Evolution and Genetic Dynamics
  • Single-cell and spatial transcriptomics
  • Agricultural Productivity and Crop Improvement
  • Caveolin-1 and cellular processes
  • Plant Pathogens and Resistance
  • Mitochondrial Function and Pathology
  • Plant and Fungal Species Descriptions
  • Cell Image Analysis Techniques
  • Agronomic Practices and Intercropping Systems
  • Cancer Risks and Factors
  • GABA and Rice Research
  • Reproductive Physiology in Livestock
  • Soil Carbon and Nitrogen Dynamics
  • Plant Diversity and Evolution

Nanjing University
2016-2024

The University of Texas Health Science Center at San Antonio
2020-2023

Agriculture and Forestry University
2022

State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau
2022

BGI Group (China)
2022

Shanghai Liangyou (China)
2020

Nanjing Institute of Geology and Paleontology
2010

Understanding the complex functions of plant leaves requires a thorough characterization discrete cell features. Although single-cell gene expression profiling technologies have been developed, their application in characterizing subtypes has not achieved yet. Here, we present scStereo-seq (single-cell spatial enhanced resolution omics sequencing) that enabled us to show bona fide transcriptome profiles Arabidopsis leaves. Subtle but significant transcriptomic differences between upper and...

10.1016/j.devcel.2022.04.011 article EN cc-by-nc-nd Developmental Cell 2022-05-01

Given the disposability of somatic tissue, selection can favor a higher mutation rate in early segregating soma than germline, as seen some animals. Although plants intra-organismic heterogeneity is poorly resolved, same selectionist logic predict lower shoot root and longer-lived terminal tissues (e.g., leaves) ontogenetically similar short-lived ones petals), that should be deterministic with no significant differences between biological replicates. To address these expectations, we...

10.1371/journal.pbio.3000191 article EN cc-by PLoS Biology 2019-04-09

Abstract Mitochondrial function is vital for energy metabolism in thermogenic adipocytes. Impaired mitochondrial bioenergetics brown adipocytes are linked to disrupted thermogenesis and balance obesity aging. Phospholipid cardiolipin (CL) phosphatidic acid (PA) jointly regulate membrane architecture dynamics, with mitochondria-associated endoplasmic reticulum membranes (MAMs) serving as the platform phospholipid biosynthesis metabolism. However, little known about regulators of MAM their...

10.1038/s41467-023-42473-2 article EN cc-by Nature Communications 2023-10-23

10.1007/978-981-33-6785-2_1 article EN Advances in experimental medicine and biology 2021-01-01

Ketosis is one of the most prevalent transition metabolic disorders in dairy cows, and has been intrinsically influenced by both genetic nutritional factors. However, altered gene expression with respective to cow ketosis not addressed yet, especially at genome-wide level. In this study, we recruited nine Holsteins diagnosed clinical ten healthy controls, for which whole blood samples were collected prepartum postpartum. Four groups defined: from cows (PCK, N = 9) postpartum (CK, 9),...

10.3390/genes11020219 article EN Genes 2020-02-19

Mutation rates and recombination vary between species regions within a genome. What are the determinants of these forms variation? Prior evidence has suggested that might be mutagenic with an excess new mutations in vicinity break points. As it is conjectured domesticated taxa have higher than wild ones, we expect to raised mutation rates. Here, use parent-offspring sequencing peach ask (i) whether mutagenic, (ii) rate peach. We find no increased rate, nor near events. If this taxa, effect...

10.1098/rspb.2016.1785 article EN cc-by Proceedings of the Royal Society B Biological Sciences 2016-10-19

The introduction of frameshifting non-3n indels enables the identification gene-trait associations. However, it has been hypothesised that recovery original reading frame owing to usage non-canonical splice forms could cause rescue. To date there is very little evidence for organism-level rescue by such a mechanism and unknown how commonly induce, or are otherwise associated with, frame-restoring forms. We perform CRISPR/Cas9 editing randomly selected loci in rice investigate these issues....

10.1371/journal.pgen.1010071 article EN cc-by PLoS Genetics 2022-02-18

Soil microorganisms, which can be affected by changing soil nutrients, play a crucial role in litter decomposition; microbial communities also determined the quality of decomposition. Different decomposition from various species may lead to alterations microorganisms as result differences quality. To determine influence root on different grassland species, pot experiment was conducted with two (gramineous forage: Bothriochloa ischaemum and leguminous Lespedeza davurica) over three periods...

10.2139/ssrn.4179053 article EN SSRN Electronic Journal 2022-01-01
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