R. Alex Harbison

ORCID: 0000-0002-4695-6142
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About
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Research Areas
  • Head and Neck Cancer Studies
  • RNA modifications and cancer
  • Polyamine Metabolism and Applications
  • Lung Cancer Treatments and Mutations
  • Cancer, Lipids, and Metabolism
  • Head and Neck Surgical Oncology
  • Cancer Research and Treatments
  • Surgical Simulation and Training
  • Cancer Genomics and Diagnostics
  • Cancer, Hypoxia, and Metabolism
  • Cancer-related molecular mechanisms research
  • Immune Cell Function and Interaction
  • Cancer-related Molecular Pathways
  • Amino Acid Enzymes and Metabolism
  • Lung Cancer Research Studies
  • Astro and Planetary Science
  • Salivary Gland Tumors Diagnosis and Treatment
  • Dental Radiography and Imaging
  • MicroRNA in disease regulation
  • Craniofacial Disorders and Treatments
  • Plant Virus Research Studies
  • Soft Robotics and Applications
  • Thyroid and Parathyroid Surgery
  • Colorectal and Anal Carcinomas
  • Voice and Speech Disorders

Washington University in St. Louis
2023-2025

Johns Hopkins University
2021-2024

Johns Hopkins Medicine
2021-2024

Bloomberg (United States)
2021-2023

University of Washington
2015-2023

Sidney Kimmel Comprehensive Cancer Center
2021-2023

University of Baltimore
2023

University of Washington Medical Center
2019-2020

Fred Hutch Cancer Center
2018

Neurological Surgery
2017

The limited success of cancer immunotherapy has posed challenges in treating patients with cancer. However, promising strides could be made a deeper understanding the factors that cause T cell dysfunction within tumor microenvironment and by developing effective strategies to counteract tumor-induced immune suppression. Here, we report tumor-derived extracellular vesicles (tEVs) can induce senescence suppression cells. Programmed death ligand 1 (PD-L1), key component tEVs, induced DNA damage...

10.1126/scitranslmed.adm7269 article EN Science Translational Medicine 2025-02-12

Epigallocatechin-3-gallate (EGCG) is a major flavonoid component of green tea that displays antiapoptotic effects in numerous models neurotoxicity. Although the intrinsic free radical scavenging activity EGCG likely contributes to its effect, other modes action have also been suggested. We systematically analyzed primary cultures rat cerebellar granule neurons (CGNs). The dose-dependent protective were determined after coincubation with eight different stimuli each induced neuronal apoptosis...

10.1089/ars.2008.2215 article EN Antioxidants and Redox Signaling 2008-08-28

Purpose: The WEE1 tyrosine kinase regulates G2-M transition and maintains genomic stability, particularly in p53-deficient tumors which require DNA repair after genotoxic therapy. Thus, a need arises to exploit the role of inhibition head neck squamous cell carcinoma (HNSCC) mostly driven by tumor-suppressor loss. This completed phase I clinical trial represents first published experience using inhibitor, AZD1775, with cisplatin docetaxel.Patients Methods: We implemented an open-label 3+3...

10.1158/1078-0432.ccr-17-3796 article EN Clinical Cancer Research 2018-03-13

Importance Given the favorable overall prognosis of human papillomavirus (HPV)–related oropharyngeal squamous cell carcinoma (OPSCC) and morbidity increased adjuvant therapy associated with positive surgical margins, large-scale studies on accuracy frozen sections in predicting final margin status HPV-related OPSCC are imperative. Final is definitive assessment tumor clearance as determined through surgeon-pathologist collaboration based permanent analysis section main specimens,...

10.1001/jamaoto.2024.4869 article EN JAMA Otolaryngology–Head & Neck Surgery 2025-01-23

Human papillomavirus-related (HPV-related) oropharyngeal squamous cell carcinomas (OPSCCs) have an excellent response rate to platinum-based chemoradiotherapy. Genomic differences between primary HPV-related OPSCCs that do or not recur are unknown. Furthermore, it is unclear if share a genomic landscape with HPV-negative head and neck cancers (HNCs).We utilized whole exome sequencing analyze somatic nucleotide (SNVs) copy number variants (CNVs) among unique set of 51 OPSCCs, including 35 did...

10.1172/jci.insight.99327 article EN JCI Insight 2018-07-25

Abstract Purpose: Human papillomavirus (HPV) infection drives the development of some head and neck squamous cell carcinomas (HNSCC). This disease is rapidly increasing in incidence worldwide. Although these tumors are sensitive to treatment, approximately 10% patients fail therapy. However, mechanisms that underlie treatment failure remain unclear. Experimental Design: We performed RNA sequencing (RNA-seq) on tissues from matched primary- (pHNSCC) metachronous-recurrent cancers (rHNSCC)...

10.1158/1078-0432.ccr-20-4789 article EN Clinical Cancer Research 2021-08-18

Background The purpose of this study was to evaluate face and content validity a low‐cost, low‐technology, non‐biologic endoscopic sinus surgery (ESS) task trainer knowledge‐based curriculum followed by construct validation the trainer. Methods A were developed. Attending otolaryngologists surveyed regarding utility curriculum. cross‐sectional performed including medical students, residents, attending otolaryngologists. Nine tasks on graded using global rating scale (GRS). Predictors...

10.1002/alr.21883 article EN International Forum of Allergy & Rhinology 2016-11-16

We present a fully automatic method for segmenting orbital structures (globes, optic nerves, and extraocular muscles) in CT images. Prior anatomical knowledge, such as shape, intensity, spatial relationships of organs landmarks, were utilized to define volume interest (VOI) that contains the desired structures. Then, VOI was used fast localization successful segmentation each structure using predefined rules. Testing our with 30 publicly available datasets, average Dice similarity...

10.1117/1.jmi.4.3.034501 article EN Journal of Medical Imaging 2017-07-22

Objectives Describe instrument motion during live endoscopic skull base surgery (ESBS) and evaluate kinematics within anatomic regions. Design Case series. Setting Tertiary academic center. Participants A single surgeon performed six anterior approaches to the pituitary. Main Outcomes Measures Time-stamped coordinates were recorded using an optical tracking system. Kinematics (i.e., mean cumulative travel, velocity, acceleration, angular velocity) was calculated by region including nasal...

10.1055/s-0036-1597136 article EN Journal of Neurological Surgery Part B Skull Base 2016-12-20

Abstract Objective To compare long‐term health‐related quality of life (HRQOL) after Transoral Endoscopic Thyroidectomy Vestibular Approach (TOETVA) and transcervical approach (TCA) thyroidectomy. Study Design Prospective cohort study. Setting Tertiary referral center. Methods A web‐based survey was distributed to patients at our institution who met the criteria for TOETVA underwent thyroidectomy by or TCA between August 2017 October 2021. All participants were least 6 months postsurgery....

10.1002/ohn.712 article EN cc-by Otolaryngology 2024-03-15

Objectives The objective of this study was to evaluate region-specific surgical instrument kinematics among novice and experienced surgeons performing endoscopic endonasal skull base surgery. Design Cadaveric experimental study. Setting Tertiary academic center. Participants Two two performed eight total ethmoidectomies sphenoidotomies using an optically tracked microdebrider. Main Outcome Measures Time-stamped Euclidian coordinates were recorded. Cumulative travel, mean linear velocity...

10.1055/s-0036-1588061 article EN Journal of Neurological Surgery Part B Skull Base 2016-08-30

Background Surgical skill development outside the operating room aims to improve technique and subsequent patient safety. The purpose of this study was evaluate correlation between technical cognitive skills with cadaveric endoscopic sinus surgery (ESS) performance change in ESS before after implementation a dedicated simulation‐based knowledge‐based curriculum. Methods A before‐after design implemented among 10 medical students junior otolaryngology residents. Participants completed...

10.1002/alr.22069 article EN International Forum of Allergy & Rhinology 2018-01-11

Background Most existing objective surgical motion analysis schemes are limited to structured tasks or recognition of patterns for certain categories surgeries. Analyzing instrument data with respect anatomical structures can break the limit, and an region segmentation algorithm is required analysis. Methods An atlas was generated by manually segmenting skull base into nine regions, including left/right anterior/posterior ethmoid sinuses, frontal sinus, left right maxillary nasal airway,...

10.1055/s-0037-1604406 article EN Journal of Neurological Surgery Part B Skull Base 2017-07-31

Objectives/Hypothesis The role of elective neck dissection (END) in patients with clinically N0 (cN0), high‐grade parotid carcinoma is unclear. objective this study was to assess the association between END and survival cN0, carcinoma. Study Design Retrospective, multicenter cohort study. Methods A review hospital‐based cases from National Cancer Data Base performed. Participants included diagnosed cancer January 1, 2004 December 31, 2013. primary exposure receipt dissection. Secondary...

10.1002/lary.28238 article EN The Laryngoscope 2019-08-29

Segmental mandibulectomy for tumors that distort the buccal surface of mandible present a reconstructive challenge.To determine whether alignment after navigation-guided reconstruction is better than non-template-assisted freehand and as good template-assisted in cadaveric trial.A trial using 10 specimens was conducted at tertiary academic center. Fiducials were created on ramus to compare with each intervention. performed cadaver. Each cadaver underwent reconstruction, manually shaped...

10.1001/jamaoto.2016.3204 article EN JAMA Otolaryngology–Head & Neck Surgery 2016-11-28

Objective: To develop a method to measure intraoperative surgical instrument motion. This model will be applicable the study of kinematics including training, skill verification, and development warning systems that detect aberrant motion may result in patient injury. Design: We developed an algorithm automate derivation endoscopic endonasal skull base surgery model. Surgical was recorded during cadaveric transnasal approach pituitary using navigation system modified record time-stamped...

10.1177/1553350617702307 article EN Surgical Innovation 2017-04-15

Metabolic features of the tumor microenvironment (TME) antagonize antitumor immunity. We hypothesized that T cell–infiltrated (Thi) tumors with a known antigen should exhibit superior clinical outcomes, though some fare worse given unfavorable metabolic leveraging (Thi), human papillomavirus–related (HPV+) head and neck squamous cell carcinomas (HNSC) to test this hypothesis. Expression 2,520 genes was analyzed among Thi HPV+ HNSCs stratified by high-risk molecular subtype. RNA sequencing...

10.1158/2767-9764.crc-22-0061 article EN cc-by Cancer Research Communications 2022-06-27

Background: Recent reports indicate a need for alternative metrics assessing operative performance.1 Primary outcome measures generally include morbidity and mortality detrimentally affecting willingness to care high-risk patients. These represent the cumulative sum of variables influencing patient outcomes. To specifically address variable surgical performance, investigators are objective performance.

10.1055/s-0036-1579907 article EN Journal of Neurological Surgery Part B Skull Base 2016-03-03

Cancers of the oral cavity are common worldwide, with incidence rates and trends varying significantly between different regions. Globally, approximately 378,000 cases were diagnosed 178,000 deaths in 2020.1 In United States, estimated annual squamous cell carcinoma (OCSCC) is reported to have decreased from 3.78 per 100,000 2001 3.54 2017.2 Historically, pharynx cancer declined U.S. 1995 2004, an percent change -1.5%.

10.1016/j.soi.2024.100055 article EN cc-by-nc-nd Surgical Oncology Insight 2024-05-10

Surgery and/or platinum-based chemoradiation remain standard of care for patients with head and neck squamous cell carcinoma (HNSCC). While these therapies are effective in a subset patients, substantial proportion experience recurrence or treatment resistance. As cisplatin mediates cytotoxicity through oxidative stress while polyamines play role redox regulation, we posited that combining polyamine transport inhibitor, AMXT-1501, would increase tumor death HNSCC cells. Cell proliferation...

10.1016/j.oor.2023.100123 article EN cc-by Oral Oncology Reports 2023-11-10
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