Adam Podhorski

ORCID: 0000-0002-5567-9503
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About
Contact & Profiles
Research Areas
  • Bioinformatics and Genomic Networks
  • Speech Recognition and Synthesis
  • Microbial Metabolic Engineering and Bioproduction
  • Direction-of-Arrival Estimation Techniques
  • Gene expression and cancer classification
  • Control Systems and Identification
  • Target Tracking and Data Fusion in Sensor Networks
  • Phonetics and Phonology Research
  • Enzyme Catalysis and Immobilization
  • Indoor and Outdoor Localization Technologies
  • Dysphagia Assessment and Management
  • Speech and Audio Processing
  • Biofuel production and bioconversion
  • Voice and Speech Disorders
  • Clinical Reasoning and Diagnostic Skills
  • Blind Source Separation Techniques
  • Railway Engineering and Dynamics
  • Liver Disease Diagnosis and Treatment
  • Electromagnetic Compatibility and Measurements
  • Radar Systems and Signal Processing
  • Surgical Simulation and Training
  • Gene Regulatory Network Analysis
  • Ophthalmology and Visual Health Research
  • Sparse and Compressive Sensing Techniques
  • Advanced Manufacturing and Logistics Optimization

Centro de Estudios e Investigaciones Técnicas de Gipuzkoa
2005-2024

Universidad de Navarra
2005-2024

Wellcome Trust
2013

European Bioinformatics Institute
2013

Leibniz Institute for Neurobiology
2010

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Knöll-Institut (HKI)
2010

Friedrich Schiller University Jena
2009-2010

Instituto Gulbenkian de Ciência
2009-2010

Brunel University of London
2009

University of Szczecin
2002

This research analyzes some aspects of the relationship between gene expression, function, and annotation. Many recent studies are implicitly based on assumption that products biologically functionally related would maintain this similarity both in their expression profiles as well Gene Ontology (GO) We analyze how accurate proves to be using real publicly available data. also aim validate a measure semantic for GO use Pearson correlation coefficient its absolute value products. explore...

10.1109/tcbb.2005.50 article EN IEEE/ACM Transactions on Computational Biology and Bioinformatics 2005-10-01

Abstract Motivation: Elementary flux modes (EFMs) represent a key concept to analyze metabolic networks from pathway-oriented perspective. In spite of considerable work in this field, the computation full set elementary large-scale still constitutes challenging issue due its underlying combinatorial complexity. Results: article, we illustrate that EFMs can be enumerated increasing order number reactions via integer linear programming. light, present novel procedure efficiently determine...

10.1093/bioinformatics/btp564 article EN Bioinformatics 2009-09-30

Abstract Motivation: The reconstruction of metabolic networks at the genome scale has allowed analysis pathways an unprecedented level complexity. Elementary flux modes (EFMs) are appropriate concept for such analysis. However, their number grows in a combinatorial fashion as size network increases, which renders application EFMs approach to large difficult. Novel methods expected deal with Results: In this article, we present novel optimization-based method determining minimal generating...

10.1093/bioinformatics/btq681 article EN Bioinformatics 2010-12-10

The analysis of high-throughput molecular data in the context metabolic pathways is essential to uncover their underlying functional structure. Among different pathway concepts systems biology, elementary flux modes (EFMs) hold a predominant place, as they naturally capture complexity and plasticity cellular metabolism go beyond predefined maps. However, use interpret has been limited so far, mainly because computation genome-scale networks unfeasible. To face this issue, optimization-based...

10.1093/bioinformatics/btt328 article EN Bioinformatics 2013-06-06

Abstract Summary: Genomic Analysis and Rapid Biological ANnotation (GARBAN) is a new tool that provides an integrated framework to analyze simultaneously compare multiple data sets derived from microarray or proteomic experiments. It carries out automated classifications of genes proteins according the criteria Gene Ontology Consortium at level depth defined by user. Additionally, it performs clustering analysis all based on functional categories differential expression levels. GARBAN also...

10.1093/bioinformatics/btg291 article EN Bioinformatics 2003-11-01

The objective quantification of voice acoustic parameters is used for the diagnosis, monitoring, and treatment disorders. Such assessments are carried out with specialised equipment within doctor’s office. controlled conditions employed usually not those real environment patient. results, although very informative, specific to measurement time when they were performed. A wearable monitoring system, based on an accelerometer ensure message, can overcome these limitations. We present a...

10.3390/app14135806 article EN cc-by Applied Sciences 2024-07-03

This paper presents the implementation and validation of a complete AoA (Angle Arrival) system. The system is typically used together with smart antenna technology. In this part mobile wireless communication positioning includes array antenna, front ends estimation block, which uses MUSIC algorithm. Furthermore, model has been developed, to find optimum configuration validated using implemented in MATLAB.

10.1109/dcis.2015.7388579 article EN 2015-11-01

Available ETCS equipment suffered from a long process before being put into service, due to inconsistencies in the specifications and inability of laboratory certification procedures completely address all needs system testing. To overcome those problems, this paper presents novel Testing Laboratory, which will help reduction on-site testing amount, Golden Reference Model ERTMS on-board equipment, that interpretation current normative. The design, implementation, operation validation these...

10.1109/itsc.2015.326 article EN 2015-09-01

This paper presents the implementation of an Angle Arrival (AoA) estimation algorithm using FPGA technology as a part Smart Train Positioning System (STPS). The STPS takes advantage combination different technologies and techniques, such GNSS AoA GSM-R signals, to determine real time train position. Furthermore, complete software system simulator has been implemented used validate in FPGA.

10.1016/j.trpro.2016.05.162 article EN Transportation research procedia 2016-01-01

The current process of putting ETCS equipment in service is affected by the testing and laboratory procedures. This paper deals with two novel tools that EATS project (FP7-TRANSPORT-314219) has produced order to overcome some problems those processes show advance towards "Zero On-Site Testing" paradigm. On one hand, saboteurs for internal interfaces on-board system have been created. These integrate seamlessly rest elements allow gather evidences regarding safety functions under test. other...

10.1016/j.trpro.2016.05.156 article EN Transportation research procedia 2016-01-01

We present a mathematical model for agri-food industry residual streams flow management, which serves as decision support tool optimizing their valorization. The aim is to determine, under cost-benefit analysis approach, the best strategy at global level. proposed provides optimal valorization scenario, namely set of routes followed by that maximizes total profit obtained. takes into account complete stoichiometry stream each step route. Furthermore, allows calculations different scenarios...

10.3390/math12172753 article EN cc-by Mathematics 2024-09-05

In this paper we present a non-parametric approach to solving the helium speech problem. Properties of are replaced by those pertaining normal means codebook mapping spectral envelopes. This method eliminates drawbacks inherent in previous procedures unscrambling as it requires neither model production nor estimation formant parameters. The only assumption is general source-filter required for linear prediction analysis. traditional transformations were computed based on assumed model. And...

10.21437/eurospeech.2001-376 article EN 2001-09-03

Previous attempts to solving helium speech problem were oriented towards development of a production model. The aim was obtain straightforward transformations which could be applied speech, or its parametric representation, in order normal speech. However it has never been investigated if the poor quality resulting might due speaker dependance voice distortion. This paper presents non-model based approach all are automatically calculated from formant parameters and F/sub 0/ extracted...

10.1109/icecs.2000.911537 article EN 2002-11-11

In this paper the Pisarenko spectral estimation method for wide sense stationary (WSS) 1-dimensional (scalar) processes is extended to autoregressive (AR) multidimensional (vector) processes.

10.1109/isit50566.2022.9834521 article EN 2022 IEEE International Symposium on Information Theory (ISIT) 2022-06-26
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