Danielle Smith

ORCID: 0000-0002-6708-5470
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About
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Research Areas
  • Mitochondrial Function and Pathology
  • Birth, Development, and Health
  • RNA modifications and cancer
  • RNA and protein synthesis mechanisms
  • Cell death mechanisms and regulation
  • Renal and related cancers
  • Autophagy in Disease and Therapy
  • Cancer, Hypoxia, and Metabolism
  • Congenital heart defects research
  • DNA and Nucleic Acid Chemistry
  • Cardiac, Anesthesia and Surgical Outcomes
  • Parkinson's Disease Mechanisms and Treatments
  • Neuroblastoma Research and Treatments
  • Musculoskeletal synovial abnormalities and treatments
  • Genetics, Aging, and Longevity in Model Organisms
  • Viral Infections and Immunology Research
  • Heat shock proteins research
  • DNA Repair Mechanisms
  • Energetic Materials and Combustion
  • Metabolism and Genetic Disorders
  • Clostridium difficile and Clostridium perfringens research
  • Retinoids in leukemia and cellular processes
  • Cellular transport and secretion
  • Soft tissue tumors and treatment
  • Brain Metastases and Treatment

University of Manchester
2024

Cancer Research UK Manchester Institute
2024

University of Cambridge
2002-2023

Indiana University School of Medicine
2008-2020

Indiana University
2020

University of South Florida
2019

University of Colorado Anschutz Medical Campus
2018

University of Colorado Denver
2018

Indiana University – Purdue University Indianapolis
2008-2015

Monash University
2005-2012

Hypoxia is a common feature of solid tumours affecting their biology and response to therapy. One the main transcription factors activated by hypoxia hypoxia-inducible factor (HIF), which regulates expression genes involved in various aspects tumourigenesis including proliferative capacity, angiogenesis, immune evasion, metabolic reprogramming, extracellular matrix (ECM) remodelling, cell migration. This can negatively impact patient outcomes inducing therapeutic resistance. The importance...

10.3389/fonc.2024.1331355 article EN cc-by Frontiers in Oncology 2024-01-30

A high yield, photoactivated cross-linking reaction between a modified tRNA and RNase P RNA was used as quantitative assay of substrate binding affinity. The allows the effects metal ions on to be measured independently in absence pre-tRNA cleavage reaction. results this assay, conjunction with conventional support following conclusions about nature RNA-tRNA interaction. (i) Monovalent cations act primarily enhance enzyme-substrate binding, presumably by functioning counterions. This...

10.1016/s0021-9258(18)45897-8 article EN cc-by Journal of Biological Chemistry 1992-02-01

Programmed necrosis is a mechanism of cell death that has been described for neuronal excitotoxicity and ischemia/reperfusion injury, but not extensively studied in the context exposure to bacterial exotoxins. The alpha-toxin Clostridium septicum beta-barrel pore-forming toxin potent cytotoxin; however, by which it induces elucidated detail. We report formed Ca(2+)-permeable pores murine myoblast cells, leading an increase intracellular Ca(2+) levels. This influx did induce apoptosis, as...

10.1371/journal.ppat.1000516 article EN cc-by PLoS Pathogens 2009-07-16

Low-level vancomycin resistance in Staphylococcus aureus (vancomycin-intermediate S. (VISA) and hetero-VISA [hVISA]) emerges during persistent infection failed therapy. Up-regulation of genes associated with the "cell wall stimulon" mutations vraSR operon have both been implicated development resistance, however molecular mechanisms are not completely understood. To further elucidate leading to transcriptome comparisons were performed using multiple clinical pairs vancomycin-susceptible...

10.1186/1471-2180-8-39 article EN cc-by BMC Microbiology 2008-01-01

We describe an assay that converts the effects of tRNA-tRNA contacts at two particular codons into a quantitative effect on beta-galactosidase level. The measures separate and combined efficiency suppression adjacent nonsense in vivo using set specially created homologous messages. In survey distal anticodon arm substitutions, we find mutant tRNAs occupying P-site reduce apparent suppressor tRNA reading A-site codon by factors 2-170. By measured distances crystallographic structure, propose...

10.1073/pnas.86.12.4397 article EN Proceedings of the National Academy of Sciences 1989-06-01

10.1016/s0021-9258(19)39629-2 article EN cc-by Journal of Biological Chemistry 1990-03-01

Human adipose stromal cells (ASCs) reside within the stromal-vascular fraction (SVF) in fat tissue, can be readily isolated, and include stem-like that may useful for therapy. An important consideration clinical application functional studies of stem/progenitor is their capacity to maintain chromosome stability culture. In this study, cultured ASC populations clones were evaluated at intervals maintenance stability. Uncultured SVF (uSVF) included comparison. G-banded analysis demonstrated...

10.1089/scd.2008.0255 article EN Stem Cells and Development 2008-08-28

The LRRK2 G2019S mutation is found at higher frequency among Parkinson disease (PD) patients of Ashkenazi Jewish (AJ) ancestry. This study was designed to test whether an internet-based approach could be effective screen and identify carriers. Individuals with without PD AJ ancestry were recruited consented through website. An algorithm applied a series screening questions individuals increased risk carry the mutation. About 1000 completed initial screening. Around 741 qualified for testing...

10.1002/mgg3.151 article EN cc-by Molecular Genetics & Genomic Medicine 2015-05-06

Mitochondrially mediated apoptosis is characterized by redistribution of proteins from mitochondria to cytoplasm following permeabilization the outer mitochondrial membrane. We applied flow cytometry quantify simultaneously two apoptogenic proteins, cytochrome c (cyt c) and Smac/DIABLO (Smac). Mammalian cells were treated with digitonin that selectively permeabilizes plasma Following fixation, infused successively primary secondary antibodies (the latter fluorescently tagged) enabling...

10.1371/journal.pone.0042298 article EN cc-by PLoS ONE 2012-07-27

Thyroid hormones regulate adult metabolism partly through actions on mitochondrial oxidative phosphorylation (OXPHOS). They also affect neurological development of the brain, but their role in cerebral OXPHOS before birth remains largely unknown, despite increase energy demand during neonatal period. Thus, this study examined prepartum hypothyroid fetal sheep. Using respirometry, Complex I (CI), II (CII), and combined CI&CII capacity were measured cerebellum cortex at 128 142 days...

10.1096/fj.202100075r article EN The FASEB Journal 2021-04-23

Background Bacteria of the suborder Corynebacterineae include significant human pathogens such as Mycobacterium tuberculosis and M. leprae. Drug resistance in mycobacteria is increasingly common making identification new antimicrobials a priority. Mycobacteria replicate intracellularly, most commonly within phagosomes macrophages, bacterial proteins essential for intracellular survival persistence are particularly attractive targets intervention with generations anti-mycobacterial drugs....

10.1371/journal.pone.0031788 article EN cc-by PLoS ONE 2012-02-21

In adults, glucocorticoids act to match the supply and demand for energy during physiological challenges, partly through actions on tissue mitochondrial oxidative phosphorylation (OXPHOS) capacity. However, little is known about role of natural prepartum rise in fetal glucocorticoid concentrations preparing tissues increased postnatal demands. This study examined effect manipulating cortisol sheep late gestation OXPHOS capacity two skeletal muscles with different locomotive functions....

10.1530/joe-21-0171 article EN cc-by Journal of Endocrinology 2021-07-29

Many cancers preferentially meet their energy requirements through the glycolytic pathway rather than via more efficient oxidative phosphorylation pathway. It is thought that this an important adaptation in cancer malignancy. We investigated whether use of glycolysis for production even presence oxygen (known as Warburg effect) varied between neuroblastoma cell lines with or without MYCN amplification (a key indicator poor disease outcome neuroblastoma).We examined ATP and lactate...

10.1186/1471-2407-8-259 article EN cc-by BMC Cancer 2008-09-14

Purpose: Terminally differentiated neurones in the central nervous system need to be protected from stress. We ask here whether differentiation of progenitor cells is accompanied by up-regulation Hsp72, with acquisition enhanced thermotolerance.Materials and methods: Human neuroblastoma SH-SY5Y were propagated an undifferentiated form subsequently into neurone-like cells. Thermotolerance tests carried out exposure various temperatures, monitoring nuclear morphology as index cell death....

10.3109/02656736.2010.531075 article EN International Journal of Hyperthermia 2011-04-05

The leucine rich repeat kinase 2 (LRRK2) is the most frequently mutated gene in hereditary Parkinson' disease (PD) and all pathogenic LRRK2 mutations result hyperactivation of its function. Here, we describe an easy robust assay to quantify pathway activity human peripheral blood neutrophils by measuring LRRK2-controlled phosphorylation one physiological substrates, Rab10 at threonine 73. immunoblotting analysis described requires a fully selective phosphospecific antibody that recognizes...

10.3791/58956 article EN Journal of Visualized Experiments 2020-03-21
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