Chikako Nagasato

ORCID: 0000-0002-9629-8934
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About
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Research Areas
  • Marine and coastal plant biology
  • Protist diversity and phylogeny
  • Algal biology and biofuel production
  • Marine and coastal ecosystems
  • Photosynthetic Processes and Mechanisms
  • Marine Biology and Ecology Research
  • Microtubule and mitosis dynamics
  • Microbial Community Ecology and Physiology
  • Polar Research and Ecology
  • Plant Molecular Biology Research
  • Biocrusts and Microbial Ecology
  • Seaweed-derived Bioactive Compounds
  • Coastal wetland ecosystem dynamics
  • Diatoms and Algae Research
  • Photoreceptor and optogenetics research
  • Plant Reproductive Biology
  • Genetic and Kidney Cyst Diseases
  • Polysaccharides and Plant Cell Walls
  • Cephalopods and Marine Biology
  • Legume Nitrogen Fixing Symbiosis
  • Marine Biology and Environmental Chemistry
  • Light effects on plants
  • Echinoderm biology and ecology
  • Paleontology and Stratigraphy of Fossils
  • Plant nutrient uptake and metabolism

Muroran Institute of Technology
2015-2024

Hokkaido University
2015-2024

The genome of Ectocarpus, a model organism for brown algae, has been sequenced. Brown algae are complex photosynthetic organisms that have adapted to life in rocky coastal environments. Genome analysis sheds light on this adaptation and reveals an extended set light-harvesting pigment biosynthesis genes novel metabolic processes such as halide metabolism. Comparative genomic analyses highlight the likely importance family receptor kinases related molecules evolution multicellularity plants,...

10.1038/nature09016 article EN cc-by-nc-sa Nature 2010-06-01

Significance The protein Pt43233 is a member of the Cys-Gly-His–rich (CGHR) family, and it was discovered to be previously unidentified carbonic anhydrase (CA), designated as θ-CA. Moreover, targeted lumen pyrenoid-penetrating thylakoid in marine diatom Phaeodactylum tricornutum . Analysis overexpression RNAi mutants suggests this CA essential for photosynthetic efficiency growth diatom. discovery θ-CA within P. implies direct use pH gradient across membrane means supplying CO 2 Calvin...

10.1073/pnas.1603112113 article EN Proceedings of the National Academy of Sciences 2016-08-16

Abstract Anion transporters sustain a variety of physiological states in cells. Bestrophins (BSTs) belong to Cl− and/or HCO3− transporter family conserved bacteria, animals, algae, and plants. Recently, putative BSTs were found the green alga Chlamydomonas reinhardtii, where they are upregulated under low CO2 (LC) conditions play an essential role CO2-concentrating mechanism (CCM). The BST orthologs also diatoms, secondary endosymbiotic algae harboring red-type plastids, but their functions...

10.1093/plphys/kiae137 article EN cc-by PLANT PHYSIOLOGY 2024-03-13
France Denœud Olivier Godfroy Corinne Cruaud Svenja Heesch Zofia Nehr and 95 more Nachida Tadrent Arnaud Couloux Loraine Brillet-Guéguen Ludovic Delage Dean Mckeown Taizo Motomura Duncan Sussfeld Xiao Fan Lisa Mazéas Nicolas Terrapon Josué Barrera‐Redondo Romy Petroll Lauric Reynes Seok-Wan Choi Jihoon Jo Kavitha Uthanumallian Kenny A. Bogaert Céline Duc Pélagie Ratchinski Agnieszka P. Lipinska Benjamin Noël Eleanor A. Murphy Martin Lohr Ananya Khatei Pauline Hamon-Giraud Christophe Vieira Svea Sanja Akerfors Shingo Akita Komlan Avia Yacine Badis Tristan Barbeyron Arnaud Belcour Wahiba Berrabah Samuel Blanquart Ahlem Bouguerba-Collin Trevor Bringloe Rose Ann Cattolico Alexandre Cormier Helena Cruz de Carvalho Romain Dallet Olivier De Clerck Ahmed Debit Erwan Denis Christophe Destombe Erica Dinatale Simon M. Dittami Élodie Drula Sylvain Faugeron Jeanne Got Louis Graf Agnès Groisillier Marie‐Laure Guillemin Lars Harms William Hatchett Bernard Henrissat Galice Hoarau Chloé Jollivet Alexander Jueterbock Ehsan Kayal Andrew H. Knoll Kazuhiro Kogame Arthur Le Bars Catherine Leblanc Line Le Gall R. Ley Xi Liu Steven T. LoDuca Pascal Jean Lopez Philippe Lopez Eric Manirakiza Karine Massau Stéphane Mauger Laëtitia Mest Gurvan Michel Cátia Monteiro Chikako Nagasato Delphine Nègre Éric Pelletier Naomi Phillips Philippe Potin Stefan A. Rensing Ellyn Rousselot Sylvie Rousvoal Declan C. Schroeder Delphine Scornet Anne Siegel Leı̈la Tirichine Thierry Tonon Klaus-Ulrich Valentin Heroen Verbruggen Florian Weinberger Glen L. Wheeler Hiroshi Kawai Akira F. Peters Hwan Su Yoon

SUMMARY Brown seaweeds are keystone species of coastal ecosystems, often forming extensive underwater forests, that under considerable threat from climate change. Despite their ecological and evolutionary importance, this phylogenetic group, which is very distantly related to animals land plants, still poorly characterised at the genome level. Here we analyse 60 new genomes include all major brown algal orders. Comparative analysis these indicated occurrence several events coinciding...

10.1101/2024.02.19.579948 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2024-02-20

Brown algae are an important group of multicellular eukaryotes, phylogenetically distinct from both the animal and land plant lineages. Ectocarpus has emerged as a model organism to study diverse aspects brown algal biology, but this system currently lacks effective reverse genetics methodology analyse functions selected target genes. Here, we report that mutations at specific sites generated following introduction CRISPR-Cas9 ribonucleoproteins into cells, using either biolistics or...

10.1111/nph.17525 article EN New Phytologist 2021-06-02

Pyrenoids are microcompartments that universally found in the photosynthetic plastids of various eukaryotic algae. They contain ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) and play a pivotal role facilitating CO

10.1073/pnas.2318542121 article EN Proceedings of the National Academy of Sciences 2024-02-26
France Denœud Olivier Godfroy Corinne Cruaud Svenja Heesch Zofia Nehr and 95 more Nachida Tadrent Arnaud Couloux Loraine Brillet-Guéguen Ludovic Delage Dean Mckeown Taizo Motomura Duncan Sussfeld Xiao Fan Lisa Mazéas Nicolas Terrapon Josué Barrera‐Redondo Romy Petroll Lauric Reynes Seok-Wan Choi Jihoon Jo Kavitha Uthanumallian Kenny A. Bogaert Céline Duc Pélagie Ratchinski Agnieszka P. Lipinska Benjamin Noël Eleanor A. Murphy Martin Lohr Ananya Khatei Pauline Hamon-Giraud Christophe Vieira Komlan Avia Svea Sanja Akerfors Shingo Akita Yacine Badis Tristan Barbeyron Arnaud Belcour Wahiba Berrabah Samuel Blanquart Ahlem Bouguerba-Collin Trevor Bringloe Rose Ann Cattolico Alexandre Cormier Helena Cruz de Carvalho Romain Dallet Olivier De Clerck Ahmed Debit Erwan Denis Christophe Destombe Erica Dinatale Simon M. Dittami Élodie Drula Sylvain Faugeron Jeanne Got Louis Graf Agnès Groisillier Marie‐Laure Guillemin Lars Harms William Hatchett Bernard Henrissat Galice Hoarau Chloé Jollivet Alexander Jueterbock Ehsan Kayal Andrew H. Knoll Kazuhiro Kogame Arthur Le Bars Catherine Leblanc Line Le Gall Ronald D. Ley Xi Liu Steven T. LoDuca Pascal Jean Lopez Philippe Lopez Eric Manirakiza Karine Massau Stéphane Mauger Laëtitia Mest Gurvan Michel Cátia Monteiro Chikako Nagasato Delphine Nègre Éric Pelletier Naomi Phillips Philippe Potin Stefan A. Rensing Ellyn Rousselot Sylvie Rousvoal Declan C. Schroeder Delphine Scornet Anne Siegel Leı̈la Tirichine Thierry Tonon Klaus-Ulrich Valentin Heroen Verbruggen Florian Weinberger Glen L. Wheeler Hiroshi Kawai Akira F. Peters Hwan Su Yoon

Brown seaweeds are keystone species of coastal ecosystems, often forming extensive underwater forests, and under considerable threat from climate change. In this study, analysis multiple genomes has provided insights across the entire evolutionary history lineage, initial emergence, through later diversification brown algal orders, down to microevolutionary events at genus level. Emergence lineage was associated with a marked gain new orthologous gene families, enhanced protein domain...

10.1016/j.cell.2024.10.049 article EN cc-by Cell 2024-11-01

A new cold-adapted Arctic strain of Haematococcus pluvialis from Blomstrandhalvøya Island (Svalbard) is described.This predominantly always in non-motile palmelloid stage.Transmission electron microscopy showed the presence very thick cell wall and abundant lipid vesicles palmelloids, including red green cells.The external morphology motile bi-flagellated cells our similar to H. pluvialis; however it differs physiology.Our adapted live produce astaxanthin low temperature (4-10°C), whilst...

10.4490/algae.2013.28.2.185 article EN ALGAE 2013-06-15

Abstract Background Population structure and genetic diversity of marine organisms in the Northwestern Pacific Ocean exhibited complex patterns. Saccharina japonica is a commercially ecologically important kelp species widely distributed along coast Japan Sea. However, it still poorly known about population genetics phylogeographic patterns wild S. populations on large geographic scale, which an contribution to breeding conservation this crop. Results We collected 612 mitochondrial COI trn...

10.1186/s12862-015-0517-8 article EN cc-by BMC Evolutionary Biology 2015-11-02

Brown algae are one of the most developmentally complex groups within eukaryotes. As in many land plants and animals, their main body axis is established early development, when initial cell gives rise to two daughter cells that have apical basal identities, equivalent shoot root identities plants, respectively. We show here mutations Ectocarpus DISTAG (DIS) gene lead loss structures during both gametophyte sporophyte generations. Several abnormalities were observed germinating dis mutants,...

10.1105/tpc.17.00440 article EN The Plant Cell 2017-12-01

Studies of postglacial range shifts could enhance our understanding seaweed species' responses to climate change and hence facilitate the conservation natural resources. However, distribution dynamics phylogeographic diversification commercially ecologically important kelp Saccharina japonica in Northwest Pacific (NWP) are still poorly surveyed. In this study, we analyzed evolutionary history S. using two mitochondrial markers 24 nuclear microsatellites. A STRUCTURE analysis revealed...

10.1111/eva.12756 article EN cc-by Evolutionary Applications 2018-12-26

Abstract Among the brown algal lineages, Ectocarpales species have isogamous fertilization in which male and female gametes are morphologically similar. In contrast, much larger than oogamous found many other lineages. It has been reported that plastids of biparentally inherited whereas maternally inherited. both species, mitochondria usually maternally. To investigate whether there is any relationship between modes inheritance organellar genome architecture, we sequenced six plastid genomes...

10.1038/s41598-020-58817-7 article EN cc-by Scientific Reports 2020-02-06

We examined the relationship between spindle orientation and determination site of cytokinesis in brown algal cells using polyspermic zygotes Scytosiphon lomentaria. When two male gametes fuse with one female gamete, zygote has pairs centrioles derived from three chloroplasts gametes. Just before mitosis, duplicate migrate towards future mitotic poles. Spindle MTs develop or four poles are formed. In a tri-polar spindle, pair shifts away otherwise, exist adjoining at pole. Chromosomes...

10.1242/jcs.115.12.2541 article EN Journal of Cell Science 2002-06-15

SUMMARY Patterns of inheritance chloroplasts and mitochondria were examined by fluorescence microscopy haplotype genome markers in the isogamous brown alga Scytosiphon lomentaria (Lyngbye) Link. Germination zygote this species was unilateral, growing thallus developed entirely from germ tube, original cell did not develop except for formation a hair. Inheritance biparental, partitioning two parental into first sporophytic cells accidental: either maternal or paternal chloroplast migrated...

10.1111/j.1440-1835.2006.00409.x article EN Phycological Research 2006-02-27
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