Paul D. Donohoue

ORCID: 0000-0003-0426-3927
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About
Contact & Profiles
Research Areas
  • CRISPR and Genetic Engineering
  • CAR-T cell therapy research
  • RNA and protein synthesis mechanisms
  • Advanced biosensing and bioanalysis techniques
  • Innovation and Socioeconomic Development
  • Biosimilars and Bioanalytical Methods
  • T-cell and B-cell Immunology
  • RNA regulation and disease
  • RNA modifications and cancer
  • Viral Infectious Diseases and Gene Expression in Insects
  • Advancements in Semiconductor Devices and Circuit Design
  • Nitrogen and Sulfur Effects on Brassica
  • Pancreatic function and diabetes
  • Biofuel production and bioconversion
  • Immune Cell Function and Interaction
  • Microbial Metabolic Engineering and Bioproduction
  • Biochemical effects in animals
  • Nanowire Synthesis and Applications
  • Tryptophan and brain disorders
  • Protein Hydrolysis and Bioactive Peptides
  • Cell Adhesion Molecules Research
  • Insect symbiosis and bacterial influences
  • RNA Research and Splicing
  • RNA Interference and Gene Delivery
  • Phytase and its Applications

Caribou Biosciences (United States)
2014-2024

University of California, Davis
2008-2009

The target DNA specificity of the CRISPR-associated genome editor nuclease Cas9 is determined by complementarity to a 20-nucleotide segment in its guide RNA. However, can bind and cleave partially complementary off-target sequences, which raises safety concerns for use clinical applications. Here, we report crystallographic structures bound bona fide substrates, revealing that binding enabled range noncanonical base-pairing interactions within guide:off-target heteroduplex. Off-target...

10.1016/j.cell.2022.09.026 article EN cc-by-nc-nd Cell 2022-10-01

The development of CRISPR genome editing has transformed biomedical research. Most applications reported thus far rely upon the Cas9 protein from Streptococcus pyogenes SF370 (SpyCas9). With many RNA guides, wildtype SpyCas9 can induce significant levels unintended mutations at near-cognate sites, necessitating substantial efforts toward strategies to minimize off-target activity. Although genome-editing potential thousands other orthologs remains largely untapped, it is not known how will...

10.1186/s13059-018-1591-1 article EN cc-by Genome biology 2018-12-01

Allogeneic chimeric antigen receptor (CAR) T cell therapies hold the potential to overcome many of challenges associated with patient-derived (autologous) CAR cells. Key considerations in development allogeneic include prevention graft-vs-host disease (GvHD) and suppression allograft rejection. Here, we describe preclinical data supporting ongoing first-in-human clinical study, CaMMouflage trial (NCT05722418), evaluating CB-011 patients relapsed/refractory multiple myeloma. is a...

10.1158/2326-6066.cir-23-0679 article EN cc-by-nc-nd Cancer Immunology Research 2024-02-08

The essential enzymatic cofactor NAD+ can be synthesized in many eukaryotes, including Saccharomyces cerevisiae and mammals, using tryptophan as a starting material. Metabolites along the pathway or on branches have important biological functions. For example, kynurenic acid act an NMDA antagonist, thereby functioning neuroprotectant wide range of pathological states. N-Formyl kynurenine formamidase (FKF) catalyzes second step biosynthetic by hydrolyzing N-formyl to produce formate. S. FKF...

10.1021/bi701172v article EN Biochemistry 2008-01-19

Background aimsTherapeutic disruption of immune checkpoints has significantly advanced the armamentarium approaches for treating cancer. The prominent role programmed death-1 (PD-1)/programmed death ligand-1 axis downregulating T cell function offers a tractable strategy enhancing disease-modifying impact CAR-T therapy.MethodsTo address checkpoint interference, primary human cells were genome edited with next-generation CRISPR-based platform (Cas9 chRDNA) by knockout PDCD1 gene encoding PD-1...

10.1016/j.jcyt.2023.03.011 article EN cc-by-nc-nd Cytotherapy 2023-04-21

ABSTRACT Background The development of CRISPR genome editing has transformed biomedical research. Most applications reported thus far rely upon the Cas9 protein from Streptococcus pyogenes SF370 (SpyCas9). With many RNA guides, wild-type SpyCas9 can induce significant levels unintended mutations at near-cognate sites, necessitating substantial efforts toward strategies to minimize off-target activity. Although genome-editing potential thousands other orthologs remains largely untapped, it is...

10.1101/172650 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2017-08-04

ABSTRACT The target DNA specificity of the CRISPR-associated genome editor nuclease Cas9 is determined by complementarity to a 20-nucleotide segment in its guide RNA. However, can bind and cleave partially complementary off-target sequences, which raises safety concerns for use clinical applications. Here we report crystallographic structures bound bona fide substrates, revealing that binding enabled range non-canonical base pairing interactions within guide–off-target heteroduplex....

10.1101/2021.11.18.469088 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2021-11-18

<div>Abstract<p>Allogeneic chimeric antigen receptor (CAR) T cell therapies hold the potential to overcome many of challenges associated with patient-derived (autologous) CAR cells. Key considerations in development allogeneic include prevention graft-vs-host disease (GvHD) and suppression allograft rejection. Here, we describe preclinical data supporting ongoing first-in-human clinical study, CaMMouflage trial (NCT05722418), evaluating CB-011 patients relapsed/refractory...

10.1158/2326-6066.c.7160258.v1 preprint EN 2024-04-02

<div>Abstract<p>Allogeneic chimeric antigen receptor (CAR) T cell therapies hold the potential to overcome many of challenges associated with patient-derived (autologous) CAR cells. Key considerations in development allogeneic include prevention graft-vs-host disease (GvHD) and suppression allograft rejection. Here, we describe preclinical data supporting ongoing first-in-human clinical study, CaMMouflage trial (NCT05722418), evaluating CB-011 patients relapsed/refractory...

10.1158/2326-6066.c.7160258 preprint EN 2024-04-02
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