Jaime A. Chaves

ORCID: 0000-0003-0679-2603
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About
Contact & Profiles
Research Areas
  • Genetic diversity and population structure
  • Species Distribution and Climate Change
  • Avian ecology and behavior
  • Bird parasitology and diseases
  • Plant and animal studies
  • Wildlife Ecology and Conservation
  • Animal Behavior and Reproduction
  • Genomics and Phylogenetic Studies
  • Gut microbiota and health
  • Ecology and Vegetation Dynamics Studies
  • Marine animal studies overview
  • Evolution and Paleontology Studies
  • Turtle Biology and Conservation
  • Clostridium difficile and Clostridium perfringens research
  • Vector-borne infectious diseases
  • Insect symbiosis and bacterial influences
  • Animal Ecology and Behavior Studies
  • Ichthyology and Marine Biology
  • Amphibian and Reptile Biology
  • Hemiptera Insect Studies
  • Viral Infections and Vectors
  • Genetic and Environmental Crop Studies
  • Bat Biology and Ecology Studies
  • Genetics and Physical Performance
  • Scarabaeidae Beetle Taxonomy and Biogeography

Universidad San Francisco de Quito
2016-2025

San Francisco State University
2006-2025

Galapagos (Belgium)
2024

University of San Francisco
2024

Charles Darwin Foundation
2017-2024

University of North Carolina at Chapel Hill
2024

University of Connecticut
2023

Ecological Society of America
2020

John Wiley & Sons (United States)
2020

University of Miami
2013-2016

James S. Santangelo Rob W. Ness Beata Cohan Connor R. Fitzpatrick Simon G. Innes and 95 more Sophie Koch Lindsay S. Miles Samreen Munim Pedro R. Peres‐Neto Cindy M. Prashad Alex T. Tong Windsor E. Aguirre Philips Akinwole Marina Alberti Jackie Álvarez Jill T. Anderson Joseph J. Anderson Yoshino Ando Nigel R. Andrew Fábio Angeoletto Daniel N. Anstett Julia Anstett Felipe Aoki‐Gonçalves A. Z. Andis Arietta Mary T. K. Arroyo Emily J. Austen Fernanda Baena‐Díaz Cory A. Barker H.A. Baylis Julia M. Beliz Alfonso Benítez-Mora David Bickford Gabriela Biedebach Gwylim S. Blackburn Mannfred M. A. Boehm Stephen P. Bonser Dries Bonte Jesse R. Bragger Cristina Branquinho Kristien I. Brans Jorge C. Bresciano Peta Brom Anna Bucharová Briana Burt James F. Cahill Katelyn D. Campbell Elizabeth J. Carlen Diego Carmona María Clara Castellanos Giada Centenaro Izan Chalen Jaime A. Chaves Mariana Chávez‐Pesqueira Xiaoyong Chen Angela M. Chilton Kristina M. Chomiak Diego F. Cisneros‐Heredia Ibrahim Cisse Aimée T. Classen Mattheau S. Comerford Camila Cordoba Fradinger Hannah B. Corney Andrew J. Crawford Kerri M. Crawford Maxime Dahirel Santiago David Robert De Haan Nicholas J. Deacon Clare Dean Ek del‐Val Eleftherios K. Deligiannis Derek Denney Margarete A Dettlaff Michelle F. DiLeo Yuanyuan Ding Moisés E. Domínguez-López Davide M. Dominoni Savannah Lane Draud Karen Dyson Jacintha Ellers Carlos I. Espinosa Liliana Essi Mohsen Falahati‐Anbaran Jéssica C. de Faria Falcão Hayden T. Fargo Mark D. E. Fellowes Raina M. Fitzpatrick Leah Flaherty Pádraic J. Flood María Francisca Flores Juan Fornoni Amy G. Foster Christopher J. Frost Tracy L. Fuentes Justin R. Fulkerson Edeline Gagnon Frauke Garbsch Colin J. Garroway Aleeza C. Gerstein Mischa M. Giasson

Urbanization transforms environments in ways that alter biological evolution. We examined whether urban environmental change drives parallel evolution by sampling 110,019 white clover plants from 6169 populations 160 cities globally. Plants were assayed for a Mendelian antiherbivore defense also affects tolerance to abiotic stressors. Urban-rural gradients associated with the of clines 47% throughout world. Variation strength was explained changes drought stress and vegetation cover varied...

10.1126/science.abk0989 article EN Science 2022-03-17

ABSTRACT Restricted range size brings about noteworthy genetic consequences that may affect the viability of a population and eventually its extinction. Particularly, question if an increase in inbreeding can avert accumulation load via purging is hotly debated conservation field. Insular populations with limited sizes represent ideal setup for relating to these factors. Leveraging set eight differently sized Galápagos mockingbirds ( Mimus ), we investigated how island shaped effective N e...

10.1111/mec.17665 article EN cc-by-nc Molecular Ecology 2025-02-06

Abstract Aim We explore the utility of newly available optical and microwave remote sensing data from Moderate Resolution Imaging Spectroradiometer (MODIS) QuikSCAT (QSCAT) instruments for species distribution modelling at regional to continental scales. Using eight Neotropical three taxonomic groups, we assess extent which can improve predictions their geographic distributions. For two bird species, investigate specific contributions different types variables model accuracy scale, where...

10.1111/j.1365-2699.2007.01858.x article EN Journal of Biogeography 2008-02-29

Abstract Adaptive radiation unfolds as selection acts on the genetic variation underlying functional traits. The nature of this can be revealed by studying tips an ongoing adaptive radiation. We studied genomic at Darwin's finch radiation; specifically focusing polymorphism within, and among, three sympatric species genus Geospiza . Using restriction site‐associated DNA ( RAD ‐seq), we characterized 32 569 single‐nucleotide polymorphisms SNP s), from which 11 outlier s for beak body size...

10.1111/mec.13743 article EN Molecular Ecology 2016-07-01

Abstract The passerine superfamily Certhioidea lacks a complete phylogeny despite decades of recognition as clade and extensive systematic work within all its constituent families. Here, we inferred near-complete species-level from molecular supermatrix, including the first comprehensive sampling wrens (Troglodytidae), used this to infer biogeographic diversification histories. We also an expanded nearly 100 putative phylospecies previously documented in literature, found that diversity had...

10.1093/ornithology/ukae007 article EN Ornithology 2024-02-06

The Andes are known to have influenced speciation patterns in many taxa, yet whether species diversification occurred simultaneously with their uplift or only after was complete remains unknown. We examined both the phylogenetic pattern and dates of branching Adelomyia hummingbirds relation Andean determine coincides chronological phases recent climatic fluctuations formation. Results suggest that genus originated central Miocene found be comprised six deeply divergent phylogroups dating...

10.1111/j.1365-294x.2011.05304.x article EN Molecular Ecology 2011-10-10

Darwin's finches are a clade of 19 species passerine birds native to the Galápagos Islands, whose biogeography, specialized beak morphologies, and dietary choices—ranging from seeds blood—make them classic example adaptive radiation. While these iconic have been intensely studied, composition their gut microbiome factors influencing it, including host species, diet, has not yet explored. We characterized microbial community associated with 12 using high-throughput 16S rRNA sequencing fecal...

10.1186/s40168-018-0555-8 article EN cc-by Microbiome 2018-09-19

Urbanization is influencing patterns of biological evolution in ways that are only beginning to be explored. One potential effect urbanization modifying ecological resource distributions underlie niche differences and thus promote maintain species diversification. Few studies have assessed such modifications, or their evolutionary consequences, the context ongoing adaptive radiation. We study this Darwin's finches on Galápagos Islands, by quantifying feeding preferences diet partitioning...

10.1111/eva.12721 article EN cc-by Evolutionary Applications 2018-10-09

Abstract The gut microbiota of animal hosts can be influenced by environmental factors, such as unnatural food items that are introduced humans. Over the past 30 years, human presence has grown exponentially in Galapagos Islands, which home to endemic Darwin's finches. Consequently, humans have changed environment and diet finches, turn, could affect their microbiota. In this study, we compared two species small ground finches ( Geospiza fuliginosa ) medium fortis ), across sites with...

10.1111/mec.15088 article EN Molecular Ecology 2019-04-25

Abstract We explored the evolutionary radiation in House Wren complex (Troglodytes aedon and allies), New World’s most widely distributed passerine species. The has been source of ongoing taxonomic debate. To evaluate phenotypic variation complex, we collected 81,182 single-nucleotide polymorphisms (SNPs) from restriction site associated loci (RADseq) mitochondrial DNA (mtDNA) samples representing geographic diversity complex. Both datasets reveal deep phylogeographic structuring, with...

10.1093/ornithology/ukad018 article EN Ornithology 2023-04-22

Abstract The northern Andes, with their steep elevational and climate gradients, are home to an exceptional diversity of flora fauna, particularly rich in avian species that have adapted divergent ecological conditions. With this comes the opportunity for parasites exploit a wide breadth hosts. However, little research has focused on examining patterns prevalence lineage Andes. Here, we screened total 428 birds from 19 (representing nine families) identified 133 infections haemosporidia...

10.1111/eva.12176 article EN cc-by Evolutionary Applications 2014-06-26

Abstract The phylogeny and systematics of fur seals sea lions (Otariidae) have long been studied with diverse data types, including an increasing amount molecular data. However, only a few phylogenetic relationships reached acceptance because strong gene-tree species tree discordance. Divergence times estimates in the group also vary largely between studies. These uncertainties impeded understanding biogeographical history group, such as when how trans-equatorial dispersal subsequent...

10.1093/sysbio/syaa099 article EN Systematic Biology 2020-12-10

Hybridization is widespread and constitutes an important source of genetic variability evolution. In animals, its role in generating novel independent lineages (hybrid speciation) has been strongly debated, with only a few cases supported by genomic data. The South American fur seal (SAfs) Arctocephalus australis marine apex predator Pacific Atlantic waters, disjunct set populations Peru Northern Chile [Peruvian (Pfs)] controversial taxonomic status. We demonstrate, using complete genome...

10.1126/sciadv.adf6601 article EN cc-by-nc Science Advances 2023-05-03

Abstract Urbanisation is occurring globally, leading to dramatic environmental changes that are altering the ecology and evolution of species. In particular, expansion human infrastructure loss fragmentation natural habitats in cities predicted increase genetic drift reduce gene flow by reducing size connectivity populations. Alternatively, ‘urban facilitation model’ suggests some species will have greater into within higher diversity lower differentiation urban These alternative hypotheses...

10.1111/mec.17311 article EN cc-by-nc Molecular Ecology 2024-03-11

Abstract Darwin's finches have been the focus of intense study demonstrating how climatic fluctuations coupled with resource competition drive evolution a variety bill sizes and shapes. The bill, as other peripheral surfaces, also plays an important role in thermoregulation numerous bird species. avian is vascularized, while limbs specialized vasculature that facilitate heat loss or conservation (i.e. they are thermoregulatory windows). Galápagos Islands, home to finches, hot relatively dry...

10.1111/1365-2435.12990 article EN Functional Ecology 2017-09-21

Abstract Shark fishing, driven by the fin trade, is primary cause of global shark population declines. Here, we present a case study that exemplifies how industrial fisheries are likely depleting populations in Eastern Tropical Pacific Ocean. In August 2017, vessel Fu Yuan Yu Leng 999, Chinese flag, was detained while crossing through Galápagos Marine Reserve without authorization. This contained 7639 sharks, representing one largest seizures recorded to date. Based on sample 929 individuals...

10.1038/s41598-021-94126-3 article EN cc-by Scientific Reports 2021-07-22

Abstract Prior to 2008 and the discovery of several important hawksbill turtle ( Eretmochelys imbricata ) nesting colonies in EP (Eastern Pacific), species was considered virtually absent from region. Research since that time has yielded new insights into hawksbills, salient among them being use mangrove estuaries for nesting. These recent revelations have raised interest genetic characterization hawksbills , studies which remained lacking date. Between 2014, we collected tissue samples 269...

10.1002/ece3.1897 article EN cc-by Ecology and Evolution 2016-01-28

Urbanization is expanding worldwide with major consequences for organisms. Anthropogenic factors can reduce the fitness of animals but may have benefits, such as consistent human food availability. Understanding anthropogenic trade-offs critical in environments variable levels natural availability, Galápagos Islands, an area rapid urbanization. For example, during dry years, reproductive success bird species, Darwin's finches, low because reduced precipitation impacts Urban areas provide...

10.1002/ece3.7360 article EN Ecology and Evolution 2021-03-16

Abstract The faunas associated with oceanic islands provide exceptional examples which to examine the dispersal abilities of different taxa and test relative contribution selective neutral processes in evolution. We patterns recent differentiation roles gene flow selection genetic morphological variation yellow warbler ( Dendroica petechia aureola ) from Galápagos Cocos Islands. Our analyses suggest diverged Central American lineages colonizing Islands recently, likely less than 300 000...

10.1111/j.1420-9101.2011.02447.x article EN Journal of Evolutionary Biology 2012-01-13
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