A5082441016- Distributed and Parallel Computing Systems
- Scientific Computing and Data Management
- Cloud Computing and Resource Management
- Genomics and Phylogenetic Studies
- Environmental DNA in Biodiversity Studies
- Microbial Community Ecology and Physiology
Lawrence Livermore National Laboratory
2023
Wellcome Sanger Institute
2023
Pawsey Supercomputing Research Centre
2021-2023
Abstract Metabarcoding of environmental DNA (eDNA) when coupled with high throughput sequencing is revolutionising the way biodiversity can be monitored across a wide range applications. However, large number tools deployed in downstream bioinformatic analyses often places challenge configuration and maintenance workflow, consequently limits research reproducibility. Furthermore, scalability needs to considered handle growing amount data due increase sequence output scale project. Here, we...
Linux container technologies such as Docker and Singularity offer encapsulated environments for easy execution of software. In high performance computing, this is especially important evolving complex software stacks with conflicting dependencies that must co-exist. Registry HPC (“shpc”) was created an effort to install containers in environment modules, seamlessly allowing typically hidden executables inside be presented the user commands, significantly simplifying experience. A...
Linux container technologies such as Docker and Singularity offer encapsulated environments for easy execution of software. In high performance computing, this is especially important evolving complex software stacks with conflicting dependencies that must co-exist. Registry HPC ("shpc") was created an effort to install containers in environment modules, seamlessly allowing typically hidden executables inside be presented the user commands, significantly simplifying experience. A remaining...