A5070648020- Genomics and Phylogenetic Studies
- RNA and protein synthesis mechanisms
- Plant and fungal interactions
- Genomics and Chromatin Dynamics
- Lichen and fungal ecology
- Botany, Ecology, and Taxonomy Studies
- Plant and Fungal Interactions Research
- Fractal and DNA sequence analysis
- Gene expression and cancer classification
- Machine Learning in Bioinformatics
- Rangeland and Wildlife Management
- Genetics, Bioinformatics, and Biomedical Research
- Diverse Musicological Studies
- Peer-to-Peer Network Technologies
- Chromosomal and Genetic Variations
- Nutrition, Genetics, and Disease
- Plant Pathogens and Fungal Diseases
- Genetic Mapping and Diversity in Plants and Animals
- Algorithms and Data Compression
- Food Security and Health in Diverse Populations
- Biomedical Text Mining and Ontologies
Royal Botanic Gardens, Kew
2020-2021
Queen Mary University of London
2020-2021
University of Colorado Anschutz Medical Campus
2013
<ns3:p>The khmer package is a freely available software library for working efficiently with fixed length DNA words, or k-mers. provides implementations of probabilistic k-mer counting data structure, compressible De Bruijn graph representation, partitioning, and digital normalization. implemented in C++ Python, under the BSD license at <ns3:ext-link xmlns:ns4="http://www.w3.org/1999/xlink" ext-link-type="uri"...
Abstract Green ash ( Fraxinus pennsylvanica ) is the most widely distributed tree in North America. Once common, it has experienced high mortality from non‐native invasive emerald borer (EAB; Agrilus planipennis ). A small percentage of native green trees that remain healthy long‐infested areas, termed “lingering ash,” display partial resistance to insect, indicating breeding and propagating populations with higher EAB may be possible. To assist breeding, ecology evolution studies, we report...
It is increasingly evident that there are multiple and overlapping patterns within the genome, these contain different types of information - regarding both genome function history. In order to discover additional genomic which may have biological significance, novel strategies required. To partially address this need, we introduce a new data visualization tool entitled Skittle. This program first creates 2-dimensional nucleotide display by assigning four colors nucleotides, then text-wraps...
Researchers seldom look at naked genome assemblies: instead the attributes of DNA sequences are mediated through statistics, annotations and high level summaries. Here we present software that visualizes bare whole assemblies in a zoomable interface. This can assist detection chromosome architecture contamination by eye changes color patterns, absence any other annotation. Where available, be visualized alongside or on top sequence. Genome alignments also visualized, laying two genomes side...