Shinji Tanaka

ORCID: 0000-0003-3906-4469
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About
Contact & Profiles
Research Areas
  • Neuroscience and Neuropharmacology Research
  • Physics of Superconductivity and Magnetism
  • Cell Adhesion Molecules Research
  • Neurogenesis and neuroplasticity mechanisms
  • Advanced Fluorescence Microscopy Techniques
  • Theoretical and Computational Physics
  • Luminescence Properties of Advanced Materials
  • Advanced Condensed Matter Physics
  • Protease and Inhibitor Mechanisms
  • Neuroinflammation and Neurodegeneration Mechanisms
  • 3D Printing in Biomedical Research
  • Neurobiology and Insect Physiology Research
  • Cellular Mechanics and Interactions
  • Advanced Photocatalysis Techniques
  • Click Chemistry and Applications
  • Biosensors and Analytical Detection
  • Insect and Arachnid Ecology and Behavior
  • Retinal Development and Disorders
  • Genetic Syndromes and Imprinting
  • Copper-based nanomaterials and applications
  • Advanced biosensing and bioanalysis techniques
  • Genetics and Neurodevelopmental Disorders
  • Autism Spectrum Disorder Research
  • Ammonia Synthesis and Nitrogen Reduction
  • Protein Kinase Regulation and GTPase Signaling

The University of Tokyo
2007-2021

International Superconductivity Technology Center
1992-2018

Tokyo Medical and Dental University
2009-2016

Japan Science and Technology Agency
2015

IHI Corporation (Czechia)
2013

University of Washington
2001-2011

NEC (Japan)
2009

Dalhousie University
2009

Osaka City University
2001-2007

Harborview Medical Center
2002

Insulin activates the ras proto-oncogene product p21ras (Ras) by stimulating conversion of inactive GDP-bound form Ras to active GTP-bound form. The protein ASH (for abundant Src homology) (Matuoka, K., Shibata, M., Yamakawa, A., and Takenawa, T. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 9015-9019) is composed one homology (SH)2 two SH3 domains highly homologous Caenorhabditis elegans sem-5 that couples a tyrosine kinase protein. We have studied an interaction with insulin-stimulated...

10.1016/s0021-9258(18)82106-8 article EN cc-by Journal of Biological Chemistry 1993-05-01

Abstract The Escherichia coli lac Z gene encoding β‐galactosidase is a widely used reporter, but few synthetic substrates are available for detecting its activity with single‐cell resolution in living samples. Our recently reported fluorogenic substrate SPiDER‐βGal suitable this purpose, hydrolysis product shows green fluorescence emission, and red‐shifted analogue therefore required use combination fluorescent protein (GFP) markers. Herein, we describe the development of β‐galactosidase,...

10.1002/anie.201808670 article EN publisher-specific-oa Angewandte Chemie International Edition 2018-09-26

Abstract Neuroligin 3 (NLGN3) and neurexins (NRXNs) constitute a canonical transsynaptic cell-adhesion pair, which has been implicated in autism. In autism spectrum disorder (ASD) development of sociality can be impaired. However, the molecular mechanism underlying NLGN3-mediated social is unclear. Here, we identify non-canonical interactions between NLGN3 protein tyrosine phosphatase δ (PTPδ) splice variants, competing with NRXN binding. NLGN3-PTPδ complex structure revealed...

10.1038/s41467-021-22059-6 article EN cc-by Nature Communications 2021-03-23

Abstract —Proliferation and α v β 3 integrin–dependent migration of vascular smooth muscle cells are suppressed on polymerized type I collagen. To identify genes specifically regulated in human by collagen, we used the suppressive subtraction hybridization technique. Compared with cultured monomer collagen suppresses following: (1) a number other extracellular matrix proteins, including fibronectin, thrombospondin-1, tenascin-C, cysteine-rich protein 61; (2) actin binding proteins α-actinin;...

10.1161/01.res.88.5.460 article EN Circulation Research 2001-03-16

Abstract Centrosome number is associated with the chromosome segregation and genomic stability. The ubiquitin–proteasome system considered to be main regulator of centrosome number. However, here we show that autophagy also regulates centrosomes. Autophagy-deficient cells carry extra autophagic regulation dependent on a centrosomal protein 63 (Cep63) given lacking contain multiple Cep63 dots are engulfed digested by in wild-type cells, upregulation increases recruited autophagosomes via...

10.1038/ncomms13508 article EN cc-by Nature Communications 2016-11-21

The local structure of superconducting ${\mathrm{YBa}}_{2}$${\mathrm{Cu}}_{4}$${\mathrm{O}}_{8}$ is studied by atomic pair-distribution analysis pulsed-neutron-scattering data. Collective displacements chain oxygen atoms forming polarized microdomains are found at low temperatures, but the domains disappear above spin-gap temperature. size smaller than 20 \AA{}. These observations suggest an active role lattice in charge localization and formation spin gap.

10.1103/physrevb.51.6747 article EN Physical review. B, Condensed matter 1995-03-01

Highlights•BMP4 is transported in dense-core vesicles along the axon•BMP4 release triggered by activity induces its perisynaptic clustering•Surface BMP4 clusters destabilize nearby synapses through type I receptors•BMP4 expression levels presynaptic neurons critically regulates synapse stabilitySummaryIn vitro screening of signaling molecules involved neural circuit formation has identified a large number synaptogenic proteins. However, factors that drive elimination remain elusive. Here, we...

10.1016/j.celrep.2017.12.101 article EN cc-by-nc-nd Cell Reports 2018-01-01

A fast, high-sensitivity photothermal microscope was developed by implementing a spatially segmented balanced detection scheme into laser scanning microscope.We confirmed 4.9 times improvement in signal-to-noise ratio the compared with that of conventional detection.The system demonstrated simultaneous bi-modal and confocal fluorescence imaging transgenic mouse brain tissue pixel dwell time 20 μs.The image visualized neurons expressing yellow proteins, while signal detected endogenous...

10.1364/boe.7.001702 article EN cc-by Biomedical Optics Express 2016-04-05

<para xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> A fully integrated 40 Gb/s transmitter and receiver chipset with SFI-5 interface is implemented in a 65 nm CMOS technology mounted plastic BGA package. The chip provides good jitter performance GHz full-rate clock architecture that alleviates pattern-dependent eliminates duty cycle dependence. measured RMS on the output 570 fs to 900 over range of 39.8 44.6 2<formula formulatype="inline"><tex...

10.1109/jssc.2009.2031026 article EN IEEE Journal of Solid-State Circuits 2009-12-01

Cell transplantation after enclosing in microcapsules has been studied as an alternative approach for treatment of wide variety diseases. In the present study, we examined feasibility using agarose microcapsules, having a cell-enclosing hollow core 100–150 μm diameter and gel membrane about 20 thickness, device methodology. We enclosed cells that had genetically engineered to express cytochrome P450 2B1, enzyme activates anticancer prodrug ifosfamide. The were shown enzymatic function they...

10.3727/096368909x471143 article EN Cell Transplantation 2009-08-01

Vascular gene therapy could potentially complement or replace current therapies for human atherosclerosis, while avoiding their side effects. However, development of vascular is limited by lack a useful vector. Helper-dependent adenovirus (HDAd) shows promise to overcome this barrier because, unlike first-generation adenovirus, HDAd achieves durable transgene expression in the artery wall with minimal inflammation. To begin test whether HDAd, delivered wall, can limit atherosclerosis we...

10.1089/hum.2010.175 article EN Human Gene Therapy 2011-01-03

Abstract Maternally inherited duplication of chromosome 15q11-q13 (Dup15q) is a pathogenic copy number variation (CNV) associated with autism spectrum disorder (ASD). Recently, paternally derived has also been shown to contribute the development ASD. The molecular mechanism underlying paternal Dup15q remains unclear. Here, we conduct genetic and overexpression-based screening identify Necdin ( Ndn ) as driver gene for resulting in ASD-like phenotypes mice. An excess amount results enhanced...

10.1038/s41467-021-24359-3 article EN cc-by Nature Communications 2021-07-01

Cylindromatosis tumor suppressor protein (CYLD) was initially identified as a deubiquitylating in familial cylindromatosis patients. Proteomic analyses using rodent brain samples revealed enrichment of CYLD purified postsynaptic density fractions. Here, we report that regulates dendritic growth and differentiation mouse hippocampal neurons. showed diffuse localization rapidly growing dendrites, but gradually concentrated spines. Overexpression knockdown the early stage cultured neurons...

10.1111/ejn.14421 article EN publisher-specific-oa European Journal of Neuroscience 2019-04-19

Objective— Vascular smooth muscle cells (SMCs) cultured on polymerized type I collagen fibrils are arrested in the G 1 phase of cell cycle, and their phenotypic markers pattern expressed genes markedly altered. In this study, we examined regulation plasminogen activator inhibitor (PAI)-1 its involvement SMC migration. Methods Results— We demonstrate that secretion surface accumulation PAI-1 suppressed SMCs compared with monomer collagen. replated vitronectin after culture result at focal...

10.1161/01.atv.0000028002.60919.4d article EN Arteriosclerosis Thrombosis and Vascular Biology 2002-10-01

The roles of calcium-calmodulin-dependent protein kinase II-alpha (CaMKIIα) in the expression long-term synaptic plasticity adult brain have been extensively studied. However, how increased CaMKIIα activity controls maturation neuronal circuits remains incompletely understood. Herein, we show that pyramidal neurons without upregulate rate spine addition, resulting elevated density. Genetic elimination specifically eliminated observed maturation-dependent suppression formation. Enhanced...

10.1038/s41598-017-13728-y article EN cc-by Scientific Reports 2017-10-11

Microglia regulate synapse stability and remodeling through multiple molecular pathways. Regulated spatial distribution of microglia within nervous tissues may affect dynamics. Here, we focused on the relationship between spine synapses in mouse neocortex found that distance microglial cell bodies (MCBs) spines is a critical parameter stability. The region close to MCBs contains processes with higher density more contacts. This also shows extensive exploration tissue space by processes. To...

10.1111/ejn.14325 article EN publisher-specific-oa European Journal of Neuroscience 2018-12-26

Abstract The Escherichia coli lac Z gene encoding β‐galactosidase is a widely used reporter, but few synthetic substrates are available for detecting its activity with single‐cell resolution in living samples. Our recently reported fluorogenic substrate SPiDER‐βGal suitable this purpose, hydrolysis product shows green fluorescence emission, and red‐shifted analogue therefore required use combination fluorescent protein (GFP) markers. Herein, we describe the development of β‐galactosidase,...

10.1002/ange.201808670 article EN Angewandte Chemie 2018-09-26

We provide evidence for a genetic link between the adrenocortical X zone and agouti (a) locus on chromosome 2 in segregating inbred mouse strain SM/J. This has been established maintained while keeping heterozygosity (Aw/a) at is, therefore, of advantage assessing effects these alleles upon physiological phenomena. In Aw/a (white-bellied agouti) or a/a (black) virgins, zones were composed exclusively nonvacuolated cells, they contained vacuolated cells only Aw/Aw. suggested that might...

10.1159/000147573 article EN Cells Tissues Organs 1994-01-01
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