Mark E. Flanagan

ORCID: 0000-0003-4125-3752
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About
Contact & Profiles
Research Areas
  • Chemical Synthesis and Analysis
  • Advanced biosensing and bioanalysis techniques
  • Click Chemistry and Applications
  • Cytokine Signaling Pathways and Interactions
  • Radical Photochemical Reactions
  • Antibiotic Resistance in Bacteria
  • DNA and Nucleic Acid Chemistry
  • Synthesis and Biological Evaluation
  • Rheumatoid Arthritis Research and Therapies
  • Monoclonal and Polyclonal Antibodies Research
  • Pharmacological Effects of Natural Compounds
  • RNA and protein synthesis mechanisms
  • Bioactive Compounds and Antitumor Agents
  • Sulfur-Based Synthesis Techniques
  • Bacterial Genetics and Biotechnology
  • Synthesis and Catalytic Reactions
  • Antibiotics Pharmacokinetics and Efficacy
  • Synthesis and Biological Activity
  • Catalytic C–H Functionalization Methods
  • Innovative Microfluidic and Catalytic Techniques Innovation
  • Oxidative Organic Chemistry Reactions
  • Glycosylation and Glycoproteins Research
  • Antimicrobial Peptides and Activities
  • X-ray Diffraction in Crystallography
  • Myeloproliferative Neoplasms: Diagnosis and Treatment

Pfizer (United States)
2014-2024

Foton Motors (China)
2016

Indiana University – Purdue University Indianapolis
2009-2013

Indiana University Health
2013

Regenstrief Institute
2009

Richard L. Roudebush VA Medical Center
2009

Stanford University
2003

Colorado State University
1991-2003

Howard Hughes Medical Institute
1996-1998

University of California, Berkeley
1996-1998

Because of its requirement for signaling by multiple cytokines, Janus kinase 3 (JAK3) is an excellent target clinical immunosuppression. We report the development a specific, orally active inhibitor JAK3, CP-690,550, that significantly prolonged survival in murine model heart transplantation and cynomolgus monkeys receiving kidney transplants. CP-690,550 treatment was not associated with hypertension, hyperlipidemia, or lymphoproliferative disease. On basis these preclinical results, we...

10.1126/science.1087061 article EN Science 2003-10-31

There is a critical need for safer and more convenient treatments organ transplant rejection autoimmune disorders such as rheumatoid arthritis. Janus tyrosine kinases (JAK1, JAK3) are expressed in lymphoid cells involved the signaling of multiple cytokines important various T cell functions. Blockade JAK1/JAK3-STAT pathway with small molecule was anticipated to provide therapeutic immunosuppression/immunomodulation. The Pfizer compound library screened against catalytic domain JAK3 resulting...

10.1021/jm1004286 article EN Journal of Medicinal Chemistry 2010-11-24

Interest in drugs that covalently modify their target is driven by the desire for enhanced efficacy can result from silencing of enzymatic activity until protein resynthesis occur, along with potential increased selectivity targeting uniquely positioned nucleophilic residues protein. However, covalent approaches carry additional risk toxicities or hypersensitivity reactions modification unintended targets. Here we describe methods measuring reactivity reactive groups (CRGs) a biologically...

10.1021/jm501412a article EN Journal of Medicinal Chemistry 2014-11-06

Janus kinases (JAKs) are intracellular tyrosine that mediate the signaling of numerous cytokines and growth factors involved in regulation immunity, inflammation, hematopoiesis. As JAK1 pairs with JAK2, JAK3, TYK2, a JAK1-selective inhibitor would be expected to inhibit many inflammation immune function while avoiding inhibition JAK2 homodimer regulating erythropoietin thrombopoietin signaling. Our efforts began tofacitinib, an oral JAK approved for treatment rheumatoid arthritis. Through...

10.1021/acs.jmedchem.7b01598 article EN Journal of Medicinal Chemistry 2018-01-03

DNA Encoded Libraries have proven immensely powerful tools for lead identification. The ability to screen billions of compounds at once has spurred increasing interest in DEL development and utilization. Although provides access libraries unprecedented size diversity, the idiosyncratic hydrophilic nature tag severely limits scope applicable chemistries. It is known that biomacromolecules can be reversibly, noncovalently adsorbed eluted from solid supports, this phenomenon been utilized...

10.1021/jacs.9b03774 article EN Journal of the American Chemical Society 2019-05-28

A new procedure for the photoredox-mediated conjugate addition of radicals that can be conveniently generated from α-amino acids to DNA-tagged Michael acceptors and styrenes is presented. This C(sp3 )-C(sp3 ) coupling tolerates a broad array structurally diverse radical precursors, including all 20 proteinogenic amino acids. Importantly, this reaction proceeds under mild conditions in DNA-compatible aqueous media. Furthermore, presented are compatible with DNA, making platform well suited...

10.1002/cmdc.201800492 article EN ChemMedChem 2018-08-01

A new catalytic manifold that merges photoredox with nickel catalysis in aqueous solution is presented. Specifically, the combination of a highly active, yet air-stable, precatalyst electron-deficient pyridyl carboxamidine ligand was key to development water-compatible platform, which crucial requirement for preparation DNA-encoded libraries (DELs). Together an iridium-based photocatalyst and powerful light source, this dual approach enabled efficient decarboxylative arylation α-amino acids...

10.1021/acscombsci.9b00076 article EN ACS Combinatorial Science 2019-06-21

Healthcare professionals develop workarounds rather than using electronic health record (EHR) systems. Understanding the reasons for is important to facilitate user-centered design and alignment between work context available information technology tools.To examine both paper- computer-based use of EHR systems in three benchmark institutions.Qualitative data were collected 11 primary care outpatient clinics across healthcare institutions. Data collection methods included direct observation...

10.1136/amiajnl-2012-000982 article EN Journal of the American Medical Informatics Association 2013-03-15

High-throughput experimentation (HTE) has emerged as an important tool in drug discovery, providing a platform for preparing large compound libraries and enabling swift reaction screening over wide-ranging conditions. Recent advances automated high-density, material-sparing HTE have necessitated the development of rapid analytics with sensitivity resolution sufficient to identify products and/or assess performance timely data-rich manner. Combination ultrathroughput (UT) reader Acoustic...

10.1021/acsmedchemlett.0c00066 article EN ACS Medicinal Chemistry Letters 2020-05-01

DNA-compatible C(sp<sup>3</sup>)–H activation reactions of aliphatic carboxylic acids, amides, and ketones were developed for efficient access to DEL synthesis.

10.1039/d0sc03935g article EN cc-by-nc Chemical Science 2020-01-01

DNA encoded libraries (DEL) have shown promise as a valuable technology for democratizing the hit discovery process. Although DEL provides relatively inexpensive access to of unprecedented size, their production has been hampered by idiosyncratic needs encoding tag relegating compatible chemistry dilute aqueous environments. Recently reversible adsorption solid support (RASS) demonstrated promising method expand reactivity using standard organic synthesis protocols. Here we demonstrate suite...

10.1002/anie.201915493 article EN Angewandte Chemie International Edition 2020-02-12

The on-DNA synthesis of highly substituted cyclobutanes was achieved through a photocatalytic [2 + 2] cycloaddition reaction in aqueous solution. Readily available DNA-tagged styrene derivatives were reacted with structurally diverse cinnamates the presence an iridium-based photocatalyst, Ir(ppy)2(dtbbpy)PF6, to forge two new C(sp3)-C(sp3) bonds. This transformation demonstrated have excellent functional group tolerance and allowed for facile installation variety heteroaromatic substituents...

10.1021/acs.orglett.0c00574 article EN Organic Letters 2020-04-02

OBJECTIVE To facilitate patient handoffs between physicians, the computerized handoff tool (PHT) extracts information from electronic health record to populate a form that is printed and given cross-cover physician. OBJECTIVES were to: (1) evaluate rate at which data elements of interest extracted into PHT, (2) assess frequency for needing beyond contained in PHT where obtained, (3) physician's perceptions (4) identify opportunities improvement. DESIGN Observational study. MEASUREMENTS This...

10.1197/jamia.m2892 article EN Journal of the American Medical Informatics Association 2009-04-23

A novel series of monocarbam compounds exhibiting promising antibacterial activity against multidrug resistant Gram-negative microorganisms is reported, along with the synthesis one such molecule MC-1 (1). Also reported are structure-activity relationships associated in vitro and vivo efficacy 1 related analogues addition to hydrolytic stability possible implications thereof.

10.1021/ml200012f article EN ACS Medicinal Chemistry Letters 2011-03-02

10.1016/j.bbrc.2020.04.028 article EN Biochemical and Biophysical Research Communications 2020-05-12

DNA-encoded chemical library (DECL) synthesis must occur in aqueous media under conditions that preserve the integrity of DNA encoding tag. While identification "DNA-compatible" reaction is critical for development DECL designs explore previously inaccessible space, reports measuring such compatibility have been largely restricted to methods do not faithfully capture impact on fidelity solution phase. Here we report a comprehensive methodology uses soluble substrates exactly recapitulate...

10.1021/acscombsci.9b00113 article EN ACS Combinatorial Science 2019-08-19

Over the past 20 years, toolbox for discovering small-molecule therapeutic starting points has expanded considerably. Pharmaceutical researchers can now choose from technologies that, in addition to traditional high-throughput knowledge-based and diversity screening, include screening of fragment fragment-like libraries, affinity selection mass spectrometry, against DNA-encoded libraries (DELs). Each these techniques its own unique combination advantages limitations that makes them more, or...

10.1177/2472555220979589 article EN cc-by-nc-nd SLAS DISCOVERY 2021-01-14

We report novel polymyxin analogues with improved antibacterial in vitro potency against resistant recent clinical isolates of Acinetobacter baumannii and Pseudomonas aeruginosa . In addition, a human renal cell assay (hRPTEC) was used to inform structure-toxicity relationships further differentiate analogues. Replacement the Dab-3 residue Dap-3 combination relatively polar 6-oxo-1-phenyl-1,6-dihydropyridine-3-carbonyl side chain as fatty acyl replacement yielded analogue 5x, which...

10.1021/jm400416u article EN Journal of Medicinal Chemistry 2013-06-04

Antibacterial compounds that affect bacterial viability have traditionally been identified, confirmed, and characterized in standard laboratory media. The historical success of identifying new antibiotics via this route has justifiably established a traditional means screening for antimicrobials. emergence multi-drug-resistant (MDR) pathogens expedited the need antibiotics, though many industry questioned source(s) these compounds. As pharmaceutical companies' chemical libraries exhaustively...

10.1371/journal.pone.0051732 article EN cc-by PLoS ONE 2012-12-11

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTCannizzaro-based O2-dependent cleavage of DNA by quinocarcinRobert M. Williams, Tomasz Glinka, Mark E. Flanagan, Renee Gallegos, Hazel Coffman, and Deihua PeiCite this: J. Am. Chem. Soc. 1992, 114, 2, 733–740Publication Date (Print):January 1, 1992Publication History Published online1 May 2002Published inissue 1 January 1992https://doi.org/10.1021/ja00028a049RIGHTS & PERMISSIONSArticle Views301Altmetric-Citations50LEARN ABOUT THESE METRICSArticle...

10.1021/ja00028a049 article EN Journal of the American Chemical Society 1992-01-01

Respiratory tract bacterial strains are becoming increasingly resistant to currently marketed macrolide antibiotics. The current alternative telithromycin (1) from the newer ketolide class of macrolides addresses resistance but is hampered by serious safety concerns, hepatotoxicity in particular. We have discovered a novel series azetidinyl ketolides that focus on mitigation minimizing hepatic turnover and time-dependent inactivation CYP3A isoforms liver without compromising potency efficacy 1.

10.1021/jm900729s article EN Journal of Medicinal Chemistry 2009-09-23
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