Miloslav Karhánek

ORCID: 0000-0001-8310-681X
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About
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Research Areas
  • Nanopore and Nanochannel Transport Studies
  • Microfluidic and Capillary Electrophoresis Applications
  • Microfluidic and Bio-sensing Technologies
  • Muscle Physiology and Disorders
  • Advanced biosensing and bioanalysis techniques
  • Molecular Biology Techniques and Applications
  • Ion channel regulation and function
  • Spaceflight effects on biology
  • Muscle activation and electromyography studies
  • Genomics and Phylogenetic Studies
  • RNA modifications and cancer
  • MicroRNA in disease regulation
  • Hearing, Cochlea, Tinnitus, Genetics
  • Adipose Tissue and Metabolism
  • Endometrial and Cervical Cancer Treatments
  • Neuroscience and Neural Engineering
  • Gene expression and cancer classification
  • Circular RNAs in diseases
  • Neuroscience and Neuropharmacology Research
  • RNA regulation and disease
  • Muscle metabolism and nutrition
  • Cellular transport and secretion
  • Radiation Therapy and Dosimetry
  • Endoplasmic Reticulum Stress and Disease
  • Neurobiology and Insect Physiology Research

Biomedical Research Center of the Slovak Academy of Sciences
2020-2025

Slovak Academy of Sciences
2021-2023

Institute of Experimental Endocrinology of the Slovak Academy of Sciences
2021-2023

Comenius University Bratislava
2021

University of California, Santa Cruz
2008-2009

Stanford University
2005-2008

New York Genome Center
2006-2007

The University of Tokyo
2006

Palo Alto University
2006

Marquette University
1995-1999

1 Soleus biopsies were obtained from four male astronauts 45 days before and within 2 h after a 17 day spaceflight. For all astronauts, single chemically skinned post-flight fibres expressing only type I myosin heavy chain (MHC) developed less average peak Ca2+ activated force (Po) during fixed-end contractions (0.78 ± 0.02 vs. 0.99 0.03 mN) shortened at greater mean velocity unloaded (Vo) (0.83 0.64 fibre lengths s−1) than pre-flight fibres. 3 The flight-induced decline in absolute Po was...

10.1111/j.1469-7793.1999.0915u.x article EN The Journal of Physiology 1999-05-01

Ion current rectification with quartz nanopipette electrodes was investigated through the control of surface charge. The presence and absence a positively charged poly-l-lysine (PLL) coating resulted in rectified opposite polarity. results agreed theories developed for current-rectifying conical nanopores, suggesting similar underlying mechanism among asymmetric nanostructure general. This condition dependence can be used as fundamental principle multi-purpose real-time vivo biosensors.

10.1021/nl061681k article EN Nano Letters 2006-10-05

Nanopipette technology can uniquely identify biomolecules such as proteins based on differences in size, shape, and electrical charge. These are determined by the detection of changes ionic current interact with nanopipette tip coated probe molecules. Here we show that electrostatic, biotin-streptavidin, antibody-antigen interactions surface affect flowing through a 50-nm pore. Highly charged polymers interacting glass modulated rectification property electrode. Affinity-based binding...

10.1073/pnas.0900306106 article EN Proceedings of the National Academy of Sciences 2009-03-06

Single DNA molecules labeled with nanoparticles can be detected by blockades of ionic current as they are translocated through a nanopipette tip formed pulled glass capillary. The detection technique provide not only tools for and identification single protein but also deeper insight understanding stochastic interactions various biomolecules their environment.

10.1021/nl0480464 article EN Nano Letters 2005-01-25

A contact interaction is proposed to exist between the voltage sensor of transverse tubular membrane skeletal muscle and calcium release channel sarcoplasmic reticulum. This given a quantitative formulation inspired in Monod, Wyman, Changeux model allosteric transitions hemoglobin (Monod, J., J. J.-P. Changeux. 1965. Journal Molecular Biology. 12:88-118), analogous one by Marks Jones for voltage-dependent Ca channels (Marks, T. N., S. W. Jones. 1992. General Physiology. 99:367-390). The...

10.1085/jgp.102.3.449 article EN The Journal of General Physiology 1993-09-01

Rapid, sequence-specific DNA detection is essential for applications in medical diagnostics and genetic screening. Electrical biosensors that use immobilized nucleic acids are especially promising these because of their potential miniaturization automation. Current methods based on sequencing by synthesis rely optical readouts; however, a direct electrical method this technique not available. We report here an approach enzymatically catalyzed induced surface charge perturbation. discovered...

10.1073/pnas.0601184103 article EN Proceedings of the National Academy of Sciences 2006-04-14

Autism spectrum disorder (ASD) is a complex of neurodevelopmental conditions with increasing incidence. The microbiota children ASD distinct from neurotypical children, their food habits are also different, and it known that nutrient intake influences in specific way. Thus, this study investigates the association gut microbiota. Children had dietary energy intakes similar to controls, but they more often demonstrated selectivity, which seemed result deficiency micronutrients such as vitamins...

10.3390/ijms21082797 article EN International Journal of Molecular Sciences 2020-04-17

Soleus muscle fibers from the rat display a reduction in peak power and Ca 2+ sensitivity after hindlimb suspension. To examine human responses to non-weight bearing, we obtained soleus biopsies eight adult men before immediately 17 days of bed rest (BR). Single chemically skinned were mounted between force transducer servo-controlled position motor activated with maximal (isotonic properties) and/or submaximal (Ca sensitivity) levels free . Gel electrophoresis indicated that all pre-...

10.1152/jappl.1998.85.5.1949 article EN Journal of Applied Physiology 1998-11-01

Abstract Background Pathogenic variants in the ATAD3A gene lead to a heterogenous clinical picture and severity ranging from recessive neonatal-lethal pontocerebellar hypoplasia through milder dominant Harel-Yoon syndrome up to, again, but cardiomyopathy. The genetic diagnostics of ATAD3A- related disorders is also challenging due three paralogous genes ATAD3 locus, making it difficult target for both sequencing CNV analyses. Results Here we report four individuals two families with compound...

10.1186/s13023-023-02689-3 article EN cc-by Orphanet Journal of Rare Diseases 2023-04-24

The aim of this study was to determine the effectiveness Type 1 Diabetes Genetic Risk Score (T1D GRS) for prioritisation children with newly diagnosed hyperglycaemia genetic testing monogenic diabetes. Methods: A cohort 808 and adolescents were collected. All underwent standard clinical follow-up based on knowledge means accessible at time. In in 189 control subjects (165 diabetes patients 24 healthy individuals), we assessed T1D GRS2 10 SNP GRS scores. We cut-off our investigated its...

10.1101/2025.02.07.25320954 preprint EN cc-by-nc-nd medRxiv (Cold Spring Harbor Laboratory) 2025-02-10

RNA-DNA differences (RDDs) challenge the traditional view of RNA as a faithful copy DNA, arising through editing, transcriptional errors, and oxidative damage. Reactive oxygen species (ROS) play central role, inducing lesions like 8-oxo-guanine that compromise transcription translation, leading to dysfunctional proteins. This review explores biochemical basis RDDs, their exacerbation under stress, dual roles in cellular adaptation disease. RDDs contribute genomic instability are implicated...

10.20944/preprints202503.0163.v1 preprint EN 2025-03-03

Abstract In this study, we aimed to elucidate the role of gut microbiome in multistage progression colorectal cancer (CRC). We analyse bacterial composition three clinical groups: healthy individuals, patients with precancerous polyps (adenomas), and cancerous tumours (carcinomas). Biopsy samples were profiled using Illumina MiSeq platform. Significant differences microbiota emerged between groups. The tumour-associated showed increased diversity specific enrichments, including...

10.1007/s44411-025-00177-7 article EN Bratislavské lekárske listy/Bratislava medical journal 2025-05-15

To understand the nature of transmission process excitation-contraction (EC) coupling, effects anion perchlorate were investigated on voltage sensor (dihydropyridine receptor, DHPR) and Ca release channel (ryanodine RyR) sarcoplasmic reticulum (SR). The molecules, from rabbit skeletal muscle, either separated in membrane vesicular fractions or biochemically purified so that normal EC coupling interaction was prevented. Additionally, effect ClO4- L-type Ca2+ gating currents guinea pig...

10.1085/jgp.102.3.423 article EN The Journal of General Physiology 1993-09-01

The current guidelines for diagnosis, prognosis, and treatment of endometrial cancer (EC), based on clinicopathological factors, are insufficient numerous reasons; therefore, we investigated the relevance miRNA expression profiles discrimination different EC subtypes. Among miRNAs previously predicted to allow distinguishing endometrioid ECs (EECs) according grades (G) from serous subtypes (SECs), verified utility miR-497-5p. In ECs, observed downregulated miR-497-5p levels that were...

10.3390/ijms22010127 article EN International Journal of Molecular Sciences 2020-12-24

It is well known that skeletal muscle intrinsic maximal shortening velocity inversely related to species body mass. However, there uncertainty regarding the relationship between contractile properties of fibers obtained from commonly studied laboratory animals and those humans. In this study we determined single chemically skinned prepared rat, rhesus monkey, human soleus gastrocnemius samples under identical experimental conditions. All used for analysis expressed type I myosin heavy chain...

10.1152/ajpregu.1997.272.1.r34 article EN AJP Regulatory Integrative and Comparative Physiology 1997-01-01

This study examined the effectiveness of intermittent weight bearing (IWB) as a countermeasure to non-weight-bearing (NWB)-induced alterations in soleus type I fiber force (in mN), tension (Po; per cross-sectional area kN/m-2), and maximal unloaded shortening velocity (Vo, lengths/s). Adult rats were assigned one following groups: normal (WB), 14 days hindlimb NWB (NWB group), with IWB treatments (IWB group). The treatment consisted four 10-min periods standing WB each day. Single,...

10.1152/jappl.1996.80.3.981 article EN Journal of Applied Physiology 1996-03-01

Time-resolved admittance measurements were used to investigate the evolution of fusion pores formed between cells expressing influenza virus hemagglutinin (HA) and planar bilayer membranes. The majority opened in a stepwise fashion semistable conductance levels several nS. About 20% had measurable rise times nS conductances; some these conductances approximately 500 pS where they briefly lingered before opening further conductances. fall closing statistically similar opening. All exhibited...

10.1085/jgp.106.5.803 article EN The Journal of General Physiology 1995-11-01

The discrimination of different subtypes endometrial carcinoma (EC) is frequently problematic when using the current histomorphological classification; therefore, new markers for this differentiation are needed. Here, we examined differences in miRNA expression between well- and poorly-differentiated (grades 1 3) endometrioid (EEC) EEC serous (SEC). 84 tumour-suppressor miRNAs was analysed by real-time polymerase chain reactions 62 EC 20 non-neoplastic specimens. potential functions...

10.3390/ijms21176071 article EN International Journal of Molecular Sciences 2020-08-23

Cold exposure results in activation of metabolic processes required for fueling thermogenesis, potentially promoting improved health. However, the complexity underlying this process is not completely understood. We aimed to analyze changes plasma metabolites related acute cold and their relationship cold-acclimatization level health cold-acclimatized humans. Blood samples were obtained before acutely after 10–15 min ice-water swimming (<5 °C) from 14 swimmers. Using mass spectrometry, 973...

10.3390/metabo11090619 article EN cc-by Metabolites 2021-09-12

The analysis of short tandem repeats (STRs) plays an important role in forensic science, human identification, genetic mapping, and disease diagnostics. Traditional STR utilizes gel- or column-based approaches to analyze DNA repeats. Individual alleles are separated distinguished according fragment length; thus the assay is generally hampered by its low multiplex capacity. However, use microarray would employ a simple hybridization detection for field forensics biology. Here we demonstrate...

10.1073/pnas.0700921104 article EN Proceedings of the National Academy of Sciences 2007-03-28

Here we describe PathogenMIPer, a software program for designing molecular inversion probe (MIP) oligonucleotides use in pathogen identification and detection. The designs unique specific oligonucleotide probes targeting microbial or other genomes. tool tailors all sequence components (including target-specific sequences, barcode universal primers restriction sites) combines these into ready-to-order MIP assay. system can harness the genetic variability available an entire genome detection...

10.1186/1471-2105-7-500 article EN cc-by BMC Bioinformatics 2006-11-14
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