Jun Li

ORCID: 0000-0002-1285-6514
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About
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Research Areas
  • Photosynthetic Processes and Mechanisms
  • Genetic Mapping and Diversity in Plants and Animals
  • Wheat and Barley Genetics and Pathology
  • Plant nutrient uptake and metabolism
  • Lipid metabolism and biosynthesis
  • Plant Molecular Biology Research
  • interferon and immune responses
  • Nitrogen and Sulfur Effects on Brassica
  • Ocular Diseases and Behçet’s Syndrome
  • Genomics and Phylogenetic Studies
  • Plant tissue culture and regeneration
  • CRISPR and Genetic Engineering
  • Plant Stress Responses and Tolerance
  • Genetics and Plant Breeding
  • Plant Disease Resistance and Genetics
  • Genetically Modified Organisms Research
  • Soybean genetics and cultivation
  • Chromosomal and Genetic Variations
  • Biochemical Acid Research Studies
  • Legume Nitrogen Fixing Symbiosis
  • Plant Reproductive Biology
  • Microbial Community Ecology and Physiology
  • Rice Cultivation and Yield Improvement
  • Plant Physiology and Cultivation Studies
  • Light effects on plants

Tianjin Normal University
2025

Zhongkai University of Agriculture and Engineering
2025

First Affiliated Hospital of Harbin Medical University
2025

People's Hospital of Xinjiang Uygur Autonomous Region
2025

Harbin Medical University
2025

Ewha Womans University
2016-2024

Ministry of Agriculture and Rural Affairs
2019-2024

Jiangsu Academy of Agricultural Sciences
2024

Chinese Academy of Agricultural Sciences
2015-2024

Oil Crops Research Institute
2015-2024

MCScan is an algorithm able to scan multiple genomes or subgenomes in order identify putative homologous chromosomal regions, and align these regions using genes as anchors. The MCScanX toolkit implements adjusted for detection of synteny collinearity that extends the original software by incorporating 14 utility programs visualization results additional downstream analyses. Applications several sequenced plant gene families are shown examples. can be used effectively analyze chromosome...

10.1093/nar/gkr1293 article EN Nucleic Acids Research 2012-01-04
Pamela Sklar Stephan Ripke Laura J. Scott Ole A. Andreassen Sven Cichon and 95 more Nick Craddock Howard J. Edenberg John I. Nürnberger Marcella Rietschel Douglas Blackwood Aiden Corvin Matthew Flickinger Weihua Guan Morten Mattingsdal Andrew McQuillin Phoenix Kwan Thomas F. Wienker Mark J. Daly Frank Dudbridge Peter Holmans Danyu Lin Margit Burmeister Tiffany A. Greenwood Marian L. Hamshere Pierandrea Muglia Erin N. Smith Peter P. Zandi Caroline M. Nievergelt R. Anne McKinney Paul D. Shilling Nicholas J. Schork Cinnamon S. Bloss Tatiana Foroud Daniel L. Koller Elliot S. Gershon Chunyu Liu Judith A. Badner William A. Scheftner William Lawson Evaristus A. Nwulia Maria Hipolito William Coryell John Rice William Byerley Francis J. McMahon Thomas G. Schulze Wade H. Berrettini Falk W. Lohoff James B. Potash Pamela B. Mahon Melvin G. McInnis Sebastian Zöllner Peng Zhang David W. Craig Szabocls Szelinger Thomas B. Barrett René Breuer Sandra Meier Jana Strohmaier Stephanie H. Witt Federica Tozzi Anne Farmer Peter McGuffin John S. Strauss Wei Xu Kristen M. Kennedy John B. Vincent K. Matthews Richard Day Manuel A. R. Ferreira Colm Ó'Dúshláine Roy H. Perlis Soumya Raychaudhuri Douglas M. Ruderfer Susan J. Lee Jordan W. Smoller Jun Li Devin Absher William E. Bunney Jack D. Barchas Alan F. Schatzberg Edward G. Jones Fan Meng Robert C. Thompson Stanley J. Watson Richard M. Myers Huda Akil Michael Boehnke Kim Chambert Jennifer L. Moran Ed Scolnick Srdjan Djurovic Ingrid Melle Gunnar Morken Michael Gill Derek W. Morris Emma M. Quinn Thomas W. Mühleisen Franziska Degenhardt Manuel Mattheisen

10.1038/ng.943 article EN Nature Genetics 2011-09-18

Allotetraploid oilseed rape (Brassica napus L.) is an agriculturally important crop. Cultivation and breeding of B. by humans has resulted in numerous genetically diverse morphotypes with optimized agronomic traits ecophysiological adaptation. To further understand the genetic basis diversification adaptation, we report a draft genome Asian semi-winter cultivar 'ZS11' its comprehensive genomic comparison genomes winter-type 'Darmor-bzh' as well two progenitors. The integrated BAC-to-BAC...

10.1111/tpj.13669 article EN The Plant Journal 2017-08-29

In this study, we developed a turn-on mitochondria-targeting hydrogen sulfide, "probe 1", based on the selective thiolysis of 7-nitro-1,2,3-benzoxadiazole amine moiety attached to piperazine-based naphthalimide scaffold. Probe 1 exhibited excellent properties with 68-fold fluorescence enhancement, low detection limit (2.46 μM), cytotoxicity, and good selectivity toward sulfide. The success intracellular imaging indicated that probe could be used in further applications for investigation...

10.1021/acs.analchem.6b00956 article EN Analytical Chemistry 2016-04-20

Association mapping can quickly and efficiently dissect complex agronomic traits. Rapeseed is one of the most economically important polyploid oil crops, although its genome sequence not yet published. In this study, a recently developed 60K Brassica Infinium(®) SNP array was used to analyse an association panel with 472 accessions. The single-nucleotide polymorphisms (SNPs) were in silico mapped using 'pseudomolecules' representative rapeseed establish their hypothetical order perform seed...

10.1093/dnares/dsu002 article EN cc-by-nc DNA Research 2014-02-07

Arabinogalactan proteins are widely distributed in plant tissues and cells, may function the growth development of higher plants. To our knowledge, there is currently no direct evidence concerning involvement fasciclin-like arabinogalactan (FLA) sexual reproduction Arabidopsis. In this study, Arabidopsis FLA3 was found to be specifically expressed pollen grains tubes. Subcellular localization showed that anchors tightly plasma membrane, its glycosylphosphatidylinositol anchor affect...

10.1111/j.1365-313x.2010.04344.x article EN The Plant Journal 2010-08-31

Abscisic acid (ABA) is an essential hormone that controls plant growth, development, and responses to abiotic stresses. Central for ABA signaling the ABA-mediated autoactivation of three monomeric Snf1-related kinases (SnRK2.2, -2.3, -2.6). In absence ABA, SnRK2s are kept in inactive state by forming physical complexes with type 2C protein phosphatases (PP2Cs). Upon relief this inhibition, SnRK2 can autoactivate through unknown mechanisms. Here, we report crystal structures full-length...

10.1073/pnas.1118651109 article EN Proceedings of the National Academy of Sciences 2011-12-12

Common bean (Phaseolus vulgaris) is grown throughout the world and comprises roughly 50% of grain legumes consumed worldwide. Despite this, genetic resources for common beans have been lacking. Next generation sequencing, has facilitated our investigation gene expression profiles associated with biologically important traits in bean. An increased understanding will improve patterns other legume species.Combining recently developed genomic Phaseolus vulgaris, including predicted calls,...

10.1186/1471-2164-15-866 article EN cc-by BMC Genomics 2014-01-01

Post-translational modifications of histone proteins play a crucial role in responding to environmental stresses. Histone deacetylases (HDACs) catalyze the removal an acetyl group from histones and are generally believed be transcriptional repressor. In this paper, we report that cold treatment highly induces up-regulation HDACs, leading global deacetylation H3 H4. Treatment maize with HDAC inhibitor trichostatin A (TSA) under stress conditions strongly inhibits induction cold-responsive...

10.1371/journal.pone.0022132 article EN cc-by PLoS ONE 2011-07-21

Seed oil content is an important agronomic trait in rapeseed. However, our understanding of the regulatory processes controlling accumulation still limited. Using two rapeseed lines (zy036 and 51070) with contrasting content, we found that maternal genotype greatly affects seed content. Genetic physiological evidence indicated difference local tissue-specific photosynthetic activity silique wall (a tissue) was responsible for different contents. This effect mimicked by planta manipulation...

10.1111/j.1365-313x.2011.04802.x article EN The Plant Journal 2011-09-29

DNA methylation is responsive to various biotic and abiotic stresses. Heat stress a serious threat crop growth development worldwide. results in an array of morphological, physiological biochemical changes plants. The relationship between heat crops relatively unknown. We investigated the differences levels cytosine patterns seedlings two rapeseed genotypes (heat-sensitive heat-tolerant) under stress. Our revealed that were different heat-tolerant genotype heat-sensitive one control...

10.1270/jsbbs.64.125 article EN Breeding Science 2014-01-01

Abstract Supplying exogenous sulfur-rich compounds increases the content of glutathione(GSH) and phytochelatins(PCs) in plant tissues, enabling plants to enhance their cellular defense capacity and/or compartmentalize Cadmium(Cd) into vacuoles. However, mechanism by which surplus S modulates tolerance Cd stress different tissues need further investigation. In present study, we found that supplementing tartary buckwheat( Fagopyrum tararicum ) exposed with reversed induced adverse effects,...

10.1038/s41598-019-43901-4 article EN cc-by Scientific Reports 2019-05-14

Legumes play a vital role in maintaining the nitrogen cycle of biosphere. They conduct symbiotic fixation through endosymbiotic relationships with bacteria root nodules. However, this and other characteristics legumes, including mycorrhization, compound leaf development profuse secondary metabolism, are absent typical model plant Arabidopsis thaliana. We present LegumeIP (http://plantgrn.noble.org/LegumeIP/), an integrative database for comparative genomics transcriptomics studying gene...

10.1093/nar/gkr939 article EN cc-by-nc Nucleic Acids Research 2011-11-21
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