Lior Z. Braunstein

ORCID: 0000-0002-5127-0217
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About
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Research Areas
  • Breast Cancer Treatment Studies
  • Breast Lesions and Carcinomas
  • Advanced Radiotherapy Techniques
  • Cancer Genomics and Diagnostics
  • BRCA gene mutations in cancer
  • Breast Implant and Reconstruction
  • Global Cancer Incidence and Screening
  • Acute Myeloid Leukemia Research
  • HER2/EGFR in Cancer Research
  • Colorectal and Anal Carcinomas
  • Cholangiocarcinoma and Gallbladder Cancer Studies
  • Cancer Treatment and Pharmacology
  • Effects of Radiation Exposure
  • Cancer Risks and Factors
  • Chemotherapy-induced cardiotoxicity and mitigation
  • Genetic factors in colorectal cancer
  • Advanced Breast Cancer Therapies
  • Economic and Financial Impacts of Cancer
  • Lung Cancer Diagnosis and Treatment
  • Radiation Therapy and Dosimetry
  • DNA Repair Mechanisms
  • Lung Cancer Treatments and Mutations
  • Prostate Cancer Diagnosis and Treatment
  • Cancer Diagnosis and Treatment
  • Advances in Oncology and Radiotherapy

Memorial Sloan Kettering Cancer Center
2017-2025

Harvard University
2010-2025

Massachusetts General Hospital
2025

Kettering University
2018-2024

Digital Health Cooperative Research Centre
2022

Digital China Health (China)
2022

Broad Institute
2016-2018

Dana-Farber Brigham Cancer Center
2016

Brigham and Women's Hospital
2012-2016

Dana-Farber Cancer Institute
2016

Acquired somatic mutations in hematopoietic stem and progenitor cells (clonal hematopoiesis or CH) are associated with advanced age, increased risk of cardiovascular malignant diseases, decreased overall survival. These adverse sequelae may be mediated by altered inflammatory profiles observed patients CH. A pro-inflammatory immunologic profile is also worse outcomes certain infections, including SARS-CoV-2 its disease Covid-19. Whether CH predisposes to severe Covid-19 other infections...

10.1038/s41467-021-26138-6 article EN cc-by Nature Communications 2021-10-13

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) novel 2019 (COVID-19) global pandemic has led to millions of cases and hundreds thousands deaths. While older adults appear at high risk for disease, hospitalizations deaths due SARS-CoV-2 among children have been relatively rare. Integrating single-cell RNA sequencing (scRNA-seq) developing mouse lung with temporally resolved immunofluorescence in human tissue, we found that expression Spike protein primer TMPRSS2 was highest...

10.1172/jci140766 article EN Journal of Clinical Investigation 2020-11-12

A broad range of stakeholders have called for randomised evidence on the potential clinical benefits and harms proton therapy, a type radiation patients with breast cancer. Radiation therapy is an important component curative treatment, reducing cancer recurrence extending survival. Compared photon international treatment standard, reduces incidental to heart. Our overall objective evaluate whether differences between cardiac dose distributions lead meaningful reductions in morbidity...

10.1136/bmjopen-2018-025556 article EN cc-by-nc BMJ Open 2019-10-01

Abstract Stably acquired mutations in hematopoietic cells represent substrates of selection that may lead to clonal hematopoiesis (CH), a common state cancer patients is associated with heightened risk leukemia development. Owing technical and sample size limitations, most CH studies have characterized gene or mosaic chromosomal alterations (mCAs) individually. Here we leverage peripheral blood sequencing data from 32,442 jointly characterize ( n = 14,789) mCAs 383) CH. Recurrent composite...

10.1038/s41467-020-20565-7 article EN cc-by Nature Communications 2021-01-12

For breast cancer patients undergoing neoadjuvant chemotherapy (NAC), pathologic complete response (pCR; no invasive or in situ) cannot be assessed non-invasively so all undergo surgery. The aim of our study was to develop and validate a radiomics classifier that classifies pCR post-NAC on MRI prior surgery.This retrospective included women treated with NAC for from 2014 2016 (1) pre- (2) surgical pathology report assessing response. Automated analysis involved image segmentation, feature...

10.1186/s13058-020-01291-w article EN cc-by Breast Cancer Research 2020-05-28
Justin Jee Christopher J. Fong Karl Pichotta Thinh Ngoc Tran Anisha Luthra and 93 more Michele Waters Chenlian Fu Mirella L. Altoé Siyang Liu Steven B. Maron Mehnaj Ahmed Susie Kim Mono Pirun Walid K. Chatila Ino de Bruijn Arfath Pasha Ritika Kundra Benjamin Groß Brooke Mastrogiacomo Tyler Aprati David Liu Jianjiong Gao Marzia Capelletti Kelly Pekala Laura Loudon Maria Perry Chaitanya Bandlamudi Mark T.A. Donoghue Baby A. Satravada Axel Martin Ronglai Shen Yuan Chen A. Rose Brannon Jason C. Chang Lior Z. Braunstein Anyi Li Anton Safonov Aaron J. Stonestrom Pablo Sánchez Vela Clare Wilhelm Mark E. Robson Howard I. Scher Marc Ladanyi Jorge S. Reis‐Filho David B. Solit David R. Jones Daniel R. Gomez Helena A. Yu Debyani Chakravarty Rona Yaeger Wassim Abida Wungki Park Eileen M. O’Reilly Julio García‐Aguilar Nicholas D. Socci Francisco Sánchez-Vega Jian Carrot‐Zhang Peter D. Stetson Ross L. Levine Charles M. Rudin Michael F. Berger Sohrab P. Shah Deborah Schrag Pedram Razavi Kenneth L. Kehl Bob T. Li Gregory J. Riely Nikolaus Schultz Aaron Lisman Gaofei Zhao Ino de Bruijn Walid K. Chatila Xiang Li Anita Kohli Darin Moore Raymond Lim Tom Pollard Robert E. Sheridan Avery Wang Calla Chennault Manda Wilson Hongxin Zhang Robert Pimienta Surya Narayana Rangavajhala Gayathri Subramanian J.A. Valverde García Naveen Rachuri Kevin M. Boehm Mitchell I. Parker Henry Walch Subhiksha Nandakumar Jordan Eichholz Ayush Kris Paolo Manca Xuechun Bai Tejiri Agbamu U Justin Xiao-Jun Bi

The digitization of health records and growing availability tumour DNA sequencing provide an opportunity to study the determinants cancer outcomes with unprecedented richness. Patient data are often stored in unstructured text siloed datasets. Here we combine natural language processing annotations1,2 structured medication, patient-reported demographic, registry genomic from 24,950 patients at Memorial Sloan Kettering Cancer Center generate a clinicogenomic, harmonized oncologic real-world...

10.1038/s41586-024-08167-5 article EN cc-by-nc-nd Nature 2024-11-06

The Oncotype DX® Recurrence Score (RS) is an assay for hormone receptor-positive early breast cancer with extensively validated predictive and prognostic value. However, its cost lag time have limited global adoption, previous attempts to estimate it using clinicopathologic variables had success. To address this, we assembled 6172 cases across three institutions developed Orpheus, a multimodal deep learning tool infer the RS from H&E whole-slide images. Our model identifies TAILORx high-risk...

10.1038/s41467-025-57283-x article EN cc-by-nc-nd Nature Communications 2025-03-02

Abstract Background Radiation therapy is one of the most commonly used cancer therapeutics but genetic determinants clinical benefit are poorly characterized. Pathogenic germline variants in ATM known to cause ataxia-telangiectasia, a rare hereditary syndrome notable for marked radiosensitivity. In contrast, somatic inactivation common event wide variety cancers, its actionability remains obscure. Methods We analyzed 20 107 consecutively treated advanced patients who underwent targeted...

10.1093/jnci/djaa095 article EN JNCI Journal of the National Cancer Institute 2020-07-24

Clonal hematopoiesis (CH) occurs when blood cells harboring an advantageous mutation propagate faster than others. These mutations confer a risk for hematological cancers and cardiovascular disease. Here, we analyze CH in samples from pair of twin astronauts over 4 years bulk fractionated cell populations using targeted panel, linked-read whole-genome sequencing, deep RNA sequencing. We show with distinct mutational profiles increasing allelic fraction that includes high-risk, TET2 clone one...

10.1016/j.celrep.2020.108458 article EN cc-by-nc-nd Cell Reports 2020-11-25

Purpose: Squamous cell carcinoma of the anal canal (ASCC) accounts for 2% to 4% gastrointestinal malignancies in United States and is increasing incidence; however, genomic features ASCC are incompletely characterized. Primary treatment involves concurrent chemotherapy radiation (CRT), but mutational landscape resistance CRT unknown. Here, we aim compare pre- post-CRT setting.Experimental Design: We perform whole-exome sequencing primary (n = 31) recurrent 30) ASCCs correlate findings with...

10.1158/1078-0432.ccr-16-2017 article EN Clinical Cancer Research 2016-11-17

Abstract Perineural invasion (PNI) is a pathologic finding observed across spectrum of solid tumors, typically with adverse prognostic implications. Little known about how the presence PNI influences locoregional recurrence (LRR) among breast cancers. We evaluated association between and LRR an unselected, broadly representative cohort cancer patients, propensity-score matched cohort. ascertained patients seen at our institution from 2008 to 2019 for whom status salient clinicopathologic...

10.1038/s41598-021-92343-4 article EN cc-by Scientific Reports 2021-06-17

<h3>Importance</h3> After neoadjuvant chemotherapy (NAC), pathologic complete response (pCR) is an optimal outcome and a surrogate end point for improved disease-free overall survival. To date, surgical resection remains the only reliable method diagnosing pCR. <h3>Objective</h3> evaluate accuracy of magnetic resonance imaging (MRI)–guided biopsy pCR after NAC compared with reference-standard resection. <h3>Design, Setting, Participants</h3> Single-arm, phase 1, nonrandomized controlled...

10.1001/jamanetworkopen.2020.34045 article EN cc-by-nc-nd JAMA Network Open 2021-01-15
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