Jeramia Ory

ORCID: 0000-0002-5867-007X
Publications
Citations
Views
---
Saved
---
About
Contact & Profiles
Research Areas
  • Fungal Infections and Studies
  • Lipid Membrane Structure and Behavior
  • Peroxisome Proliferator-Activated Receptors
  • Protein Structure and Dynamics
  • Antifungal resistance and susceptibility
  • Click Chemistry and Applications
  • RNA Interference and Gene Delivery
  • Plant Pathogens and Fungal Diseases
  • Enzyme Structure and Function
  • Receptor Mechanisms and Signaling
  • Drug Transport and Resistance Mechanisms
  • Carbohydrate Chemistry and Synthesis
  • Scientific Computing and Data Management
  • RNA and protein synthesis mechanisms
  • Cholesterol and Lipid Metabolism
  • Chemical Synthesis and Analysis
  • Enzyme Catalysis and Immobilization
  • Yeasts and Rust Fungi Studies
  • Protein Interaction Studies and Fluorescence Analysis
  • Plant Disease Resistance and Genetics
  • Bioinformatics and Genomic Networks
  • Parasitic Infections and Diagnostics
  • Heat shock proteins research
  • Protein Degradation and Inhibitors
  • Galectins and Cancer Biology

University of Health Sciences and Pharmacy
2015-2019

King's College - Pennsylvania
2013

Commonwealth Medical College
2013

Rutgers, The State University of New Jersey
2006-2007

San Diego Supercomputer Center
2007

National Center for Biotechnology Information
2006

European Bioinformatics Institute
2006

Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry
2006

University of Minnesota
1997-2006

Washington University in St. Louis
2003-2004

<ns3:p>The khmer package is a freely available software library for working efficiently with fixed length DNA words, or k-mers. provides implementations of probabilistic k-mer counting data structure, compressible De Bruijn graph representation, partitioning, and digital normalization. implemented in C++ Python, under the BSD license at <ns3:ext-link xmlns:ns4="http://www.w3.org/1999/xlink" ext-link-type="uri"...

10.12688/f1000research.6924.1 preprint EN cc-by F1000Research 2015-09-25

The Worldwide Protein Data Bank (wwPDB; wwpdb.org) is the international collaboration that manages deposition, processing and distribution of PDB archive. online archive at ftp://ftp.wwpdb.org repository for coordinates related information more than 47 000 structures, including proteins, nucleic acids large macromolecular complexes have been determined using X-ray crystallography, NMR electron microscopy techniques. members wwPDB–RCSB (USA), MSD-EBI (Europe), PDBj (Japan) BMRB (USA)–have...

10.1093/nar/gkm937 article EN cc-by-nc Nucleic Acids Research 2007-12-12

Cryptococcus neoformans (Cn) is a pathogenic yeast and the cause of cryptococcal meningitis. Prevalence disease between males females skewed, with having an increased incidence disease. Based on reported gender susceptibility differences to Cn in literature, we used clinical isolates from Botswanan HIV-infected patients test hypothesis that different environments exerted selective pressures Cn. When examined this data set, found men had significantly higher risk death despite CD4+ T...

10.1371/journal.pone.0063632 article EN cc-by PLoS ONE 2013-05-31

The physiological consequences of molecular chaperone overproduction in Escherichia coli are presented. Constitutive DnaK from a multicopy plasmid containing large chromosomal fragments spanning the dnaK region resulted instability. Co-overproduction DnaJ with stabilized levels. To examine effects altered levels and more specific manner, an inducible expression system for dnaJ was constructed characterized. Differential rates synthesis were determined by quantitative Western blot...

10.1128/jb.174.22.7436-7444.1992 article EN Journal of Bacteriology 1992-11-01

Abstract Cryptococcus neoformans is an opportunistic fungal pathogen responsible for serious meningitis. Although many useful molecular tools have been developed its study, there are currently few inducible promoters available general use. To address this need, we constructed expression plasmids incorporating upstream elements of the C. copper transporter gene CTR4 , and tested them in serotypes A D. In response to deprivation, these mediate high‐level a reporter protein. This can be...

10.1002/yea.1139 article EN Yeast 2004-08-01

We have investigated a large set of interactions from the Helicobacter pylori protein interaction map previously identified by high-throughput yeast two-hybrid (htY2H)-based methods. This study had two aims: i) to validate htY2H as source protein-protein complexes for biochemical and structural studies H. interactome; ii) biochemically shown involve components type IV secretion systems. Thus, 17 involving 31 proteins fragments were studied, general strategy was designed produce...

10.1074/mcp.m400048-mcp200 article EN cc-by Molecular & Cellular Proteomics 2004-05-11

UDP-glucose dehydrogenase catalyses the conversion of into UDP-GlcA, a critical precursor for glycan synthesis across evolution. We have cloned gene encoding this important enzyme from opportunistic pathogen Cryptococcus neoformans. In fungus, UDP-GlcA is required capsule polysaccharides, which in turn are essential virulence. The was expressed Escherichia coli and 51.3-kDa recombinant protein wild-type five mutants purified analysis. cryptococcal strongly inhibited by UDP-xylose NADH, has...

10.1042/bj20031075 article EN Biochemical Journal 2004-06-22

10.1023/a:1006806616963 article EN Molecular and Cellular Biochemistry 1999-01-01

Adipocyte lipid-binding protein (ALBP) is a small (14.5 kDa) 10-stranded beta-barrel found in mammalian fat cells. The crystal structures of various holo-forms ALBP have been solved and show the fatty acid ligand bound large (approximately 400 A3) cavity isolated from bulk solvent. Examination suggests that it would be good site for creation an artificial catalyst, as numerous well defined are available past studies shown conformation to reasonably tolerant modification mutagenesis. Previous...

10.1093/protein/11.4.253 article EN Protein Engineering Design and Selection 1998-04-01

A number of crystallographic studies the adipocyte lipid-binding protein have established that fatty acid-binding site is within an internalized water-filled cavity. The same also suggested existence a region physically distinct from which connects cavity with external solvent, hereafter referred to as portal. In effort examine portal region, we used site-directed mutagenesis introduce mutations V32D/F57H into murine ALBP cDNA. Mutant has been isolated, crystallized, and its stability...

10.1074/jbc.272.15.9793 article EN cc-by Journal of Biological Chemistry 1997-04-01

Currently, there is very little known about the phenotypic variability within species of Rhodotorula strains and role their capsule. Cryptococcus neoformans has been considered only encapsulated human fungal pathogen, but as more individuals come to live in states immunocompromised health, they are susceptible infections, including those by . R. mucilaginosa some most commonly associated with clinical infections. We wanted know if environmental demonstrated disparate capsule phenotypes. With...

10.1128/msphere.00166-19 article EN cc-by mSphere 2019-06-11
Hakim C. Achterberg James Adams Joshua L. Adelman James D. Allen Sung Eun Bae and 95 more Piotr Banaszkiewicz P. Barmby E D Barr David Beitey Trevor Bekolay Jared Berghold John Blischak Maxime Boissonneau Azalee Bostroem Andy Boughton Amy Brown Kyler Brown Abigail Cabunoc Mayes John Chase Jin‐Young Choi Richard Clare Sarah Clayton Peter Cock Marianne Corvellec Thomas Coudrat Ryan Dale Matt Davis Andrew J. Davison Raffaella Demichelis Gabriel A. Devenyi Emily Dolson David Dotson Laurent Duchesne Jonah Duckles Rémi Emonet K. Arthur Endsley Nicolas Fauchereau Talitha Ford Iván González Jan Gosmann John Gosset Jeremy Gray Bastian Greshake Tzovaras Mary Haley Sam Hames Jessica B. Hamrick Michael Hansén Konrad Hinsen Johan Hjelm T. Mark Hodges Derek Howard Damien Irving Mike Jackson Ben Jolly Nick Jones Blake L. Joyce David I. Ketcheson W. Trevor King Sigrid Klerke Benjamin Laken Hilmar Lapp Doug Latornell Jean-Christophe Leyder Johnny Wei‐Bing Lin Andrew Lonsdale Alexandre Savio Dan Mazur François Michonneau Bill Mills Zakariyya Mughal E. S. Narayanan Alexander J. Nederbragt Ryan Neufeld Aaron O'Leary Adam Obeng Jeramia Ory Natalia Osiecka Jon Pipitone A. Pińska Timothée Poisot Paweł Pomorski Florian Rathgeber Adam Richie-Halford Janet Riley Ariel Rokem Marjorie Roswell Mahdi Sadjadi Elliott Sales de Andrade Sebastian Schmeier Leigh Sheneman Arron Shiffer Ardita Shkurti Raniere Silva Nicola Soranzo E. J. Spence Ashwin Srinath Валентина Станева Jim Stapleton Brian J. Stucky Cody Taylor

10.5281/zenodo.27351 article EN 2015-05-15

10.1038/nj6993-788b article EN Nature 2004-06-01
Coming Soon ...