Joachim Hallmayer

ORCID: 0000-0002-8520-4939
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About
Contact & Profiles
Research Areas
  • Autism Spectrum Disorder Research
  • Genetics and Neurodevelopmental Disorders
  • Genomic variations and chromosomal abnormalities
  • Genetic Associations and Epidemiology
  • Congenital heart defects research
  • Stress Responses and Cortisol
  • Schizophrenia research and treatment
  • Sleep and Wakefulness Research
  • Family and Disability Support Research
  • Tryptophan and brain disorders
  • Bipolar Disorder and Treatment
  • Genomics and Rare Diseases
  • Alzheimer's disease research and treatments
  • Attention Deficit Hyperactivity Disorder
  • Child Nutrition and Feeding Issues
  • Electroconvulsive Therapy Studies
  • Treatment of Major Depression
  • Hormonal Regulation and Hypertension
  • Child Development and Digital Technology
  • Dementia and Cognitive Impairment Research
  • Health, Environment, Cognitive Aging
  • Suicide and Self-Harm Studies
  • Polyamine Metabolism and Applications
  • Neuroscience and Neuropharmacology Research
  • Virology and Viral Diseases

Stanford University
2016-2025

Mental Illness Research, Education and Clinical Centers
2014-2023

VA Palo Alto Health Care System
2014-2023

Palo Alto Veterans Institute for Research
2019

Neurosciences Institute
2019

Stanford Medicine
1994-2018

California Center for Sleep Disorders
2018

Palo Alto University
2003-2017

American Academy of Child and Adolescent Psychiatry
2016

Institute of Behavioral Sciences
2013

<h3>Context</h3>Autism is considered the most heritable of neurodevelopmental disorders, mainly because large difference in concordance rates between monozygotic and dizygotic twins.<h3>Objective</h3>To provide rigorous quantitative estimates genetic heritability autism effects shared environment.<h3>Design, Setting, Participants</h3>Twin pairs with at least 1 twin an spectrum disorder (ASD) born 1987 2004 were identified through California Department Developmental Services.<h3>Main Outcome...

10.1001/archgenpsychiatry.2011.76 article EN Archives of General Psychiatry 2011-07-04
Peter Szatmari Andrew D. Paterson Lonnie Zwaigenbaum Wendy Roberts Jessica Brian and 95 more Xiaoqing Liu John B. Vincent Jennifer Skaug Ann Thompson Lili Senman Lars Feuk Qian Cheng Susan E. Bryson Marshall B. Jones Christian R. Marshall Stephen W. Scherer Veronica J. Vieland Christopher W. Bartlett La Vonne Mangin Rhinda Goedken Alberto M. Segre Margaret A. Pericak‐Vance Michael L. Cuccaro John R. Gilbert Harry H. Wright Ruth K. Abramson Catalina Betancur Thomas Bourgeron Christopher Gillberg Marion Leboyer Joseph D. Buxbaum Kenneth L. Davis Eric Hollander Jeremy M. Silverman Joachim Hallmayer Linda Lotspeich James S. Sutcliffe Jonathan L. Haines Susan E. Folstein Joseph Piven Thomas H. Wassink Val C. Sheffield Daniel H. Geschwind Maja Bućan W. Ted Brown Rita M. Cantor John N. Constantino T. Conrad Gilliam Martha R. Herbert Clara Lajonchere David H. Ledbetter Christa Lese‐Martin Janet Miller Stan F. Nelson Carol A Samango-Sprouse Sarah Spence Matthew W. State Rudolph E. Tanzi Hilary Coon Géraldine Dawson Bernie Devlin Annette Estes Pamela Flodman Lambertus Klei William M. McMahon Nancy J. Minshew Jeff Munson Elena Korvatska Patricia M. Rodier Gerard D. Schellenberg Moyra Smith M. Anne Spence Chris Stodgell Ping G. Tepper Ellen M. Wijsman Chang-En Yu Bernadette Rogé Carine Mantoulan Kerstin Wittemeyer Annemarie Poustka Bärbel Felder Sabine M. Klauck Claudia Schuster Fritz Poustka Sven Bölte Sabine Feineis-Matthews Evelyn Herbrecht Gabi Schmötzer John Tsiantis Κaterina Papanikolaou Elena Maestrini Elena Bacchelli Francesca Blasi Simona Carone Claudio Toma Hermán van Engeland Maretha Jonge Chantal Kemner Frederieke Koop Frederike Koop

10.1038/ng1985 article EN Nature Genetics 2007-02-18

10.1038/nn.4524 article EN Nature Neuroscience 2017-03-06
Lauren A. Weiss Dan E. Arking Mark J. Daly Aravinda Chakravarti Camille W. Brune and 95 more Kristen M. West Ashley O’Connor Gina M. Hilton R Tomlinson Andrew B. West Edwin H. Cook Todd Green Shun-Chiao Chang Stacey B. Gabriel Casey Gates Ellen Hanson Andrew Kirby Joshua M. Korn Finny G. Kuruvilla Steven McCarroll Eric M. Morrow Benjamin M. Neale Shaun Purcell Roksana Sasanfar Carrie Sougnez Christine Stevens David Altshuler James F. Gusella Susan L. Santangelo Pamela Sklar Rudolph E. Tanzi Richard Anney Anthony Bailey Gillian Baird Agatino Battaglia T. P. Berney Catalina Betancur Sven Bölte Patrick Bolton Jessica Brian Susan E. Bryson Joseph D. Buxbaum Ines Cabrito Guiqing Cai Rita M. Cantor Hilary Coon Judith Conroy Catarina Correia Christina Corsello Emily L. Crawford Michael L. Cuccaro Géraldine Dawson Maretha Jonge Bernie Devlin Eftichia Duketis Sean Ennis Annette Estes Penny Farrar Éric Fombonne Christine M. Freitag Louise Gallagher Daniel H. Geschwind John R. Gilbert Michael Gill Christopher Gillberg Jeremy Goldberg Andrew Green Jonathan Green Stephen J. Guter Jonathan L. Haines Joachim Hallmayer Vanessa Hus Sabine M. Klauck Olena Korvatska Janine A. Lamb Magdalena Laskawiec Marion Leboyer Ann Le Couteur Bennett L. Leventha Xiaoqing Liu Catherine Lord Linda Lotspeich Elena Maestrini Tiago R. Magalhães William J. Mahoney Carine Mantoulan Helen McConachie Christopher J. McDougle William M. McMahon Christian R. Marshall Judith Miller Nancy J. Minshew Anthony P. Monaco Jeff Munson John I. Nürnberger Guiomar Oliveira Alistair T. Pagnamenta Katerina Papanikolaou Jeremy Parr Andrew D. Paterson

10.1038/nature08490 article EN Nature 2009-10-01

Background: Autism is considered to have a genetic basis, although exposure certain stimuli in the prenatal period has been implicated be causal some cases.Some investigations shown an association with obstetric complications but findings inconsistent owing differences sampling and methods.Objective: To examine of factors autism spectrum disorders for cohort children, using data contained statutory database collected at time birth.Design: Subjects born Western Australia between 1980 1995...

10.1001/archpsyc.61.6.618 article EN Archives of General Psychiatry 2004-06-01

Autosomal dominant cerebellar ataxia, deafness and narcolepsy (ADCA-DN) is characterized by late onset (30-40 years old) sensory neuronal deafness, narcolepsy-cataplexy dementia. We performed exome sequencing in five individuals from three ADCA-DN kindreds identified DNMT1 as the only gene with mutations found all affected individuals. Sanger confirmed de novo mutation p.Ala570Val one family, showed co-segregation of p.Val606Phe p.Ala570Val, phenotype, two other kindreds. An additional...

10.1093/hmg/dds035 article EN Human Molecular Genetics 2012-02-09

Recent advances in the identification of susceptibility genes and environmental exposures provide broad support for a post-infectious autoimmune basis narcolepsy/hypocretin (orexin) deficiency. We genotyped loci associated with other inflammatory diseases 1,886 individuals hypocretin-deficient narcolepsy 10,421 controls, all European ancestry, using custom genotyping array (ImmunoChip). Three located outside Human Leukocyte Antigen (HLA) region on chromosome 6 were significantly disease...

10.1371/journal.pgen.1003270 article EN cc-by PLoS Genetics 2013-02-14

Significance The neuropeptide oxytocin (OXT) is critically involved in mammalian social functioning, and initial clinical research suggests that OXT biology may be altered individuals with autism spectrum disorder (ASD). Here we provide important evidence blood concentrations are highly heritable within families, yet also strongly predict functioning ASD children, their unaffected siblings, healthy control children. These findings extend to receptor genotypes which significantly associated...

10.1073/pnas.1402236111 article EN Proceedings of the National Academy of Sciences 2014-08-04
W. Brad Ruzicka Shahin Mohammadi John F. Fullard José Dávila-Velderrain Sivan Subburaju and 95 more Daniel Reed Tso Makayla Hourihan Shan Jiang Hao-Chih Lee Jaroslav Bendl Georgios Voloudakis Vahram Haroutunian Gabriel E. Hoffman Panos Roussos Manolis Kellis Schahram Akbarian Alexej Abyzov Nadav Ahituv Dhivya Arasappan José Juan Almagro Armenteros Brian J. Beliveau Sabina Berretta Rahul Bharadwaj Arjun Bhattacharya Lucy Bicks Kristen Brennand Davide Capauto Frances A. Champagne Tanima Chatterjee Chris Chatzinakos Yuhang Chen H. Isaac Chen Yuyan Cheng Lijun Cheng Andrew Chess Jo-fan Chien Zhiyuan Chu Declan Clarke Ashley Clement Leonardo Collado‐Torres Gregory M. Cooper Gregory E. Crawford Rujia Dai Nikolaos P. Daskalakis Amy Deep–Soboslay Chengyu Deng Christopher P. DiPietro Stella Dracheva Shiron Drusinsky Ziheng Duan Duc M. Duong Cagatay Dursun Nicholas J. Eagles Jonathan I. Edelstein Prashant S. Emani Kiki Galani Timur R. Galeev Michael J. Gandal Sophia C. Gaynor Mark Gerstein Daniel H. Geschwind Kiran Girdhar Fernando S. Goes William Greenleaf Jennifer Grundman Hanmin Guo Qiuyu Guo Chirag Gupta Yoav Hadas Joachim Hallmayer Xikun Han Natalie Hawken Chuan He Ella Henry Stephanie C. Hicks Marcus Ho Li‐Lun Ho Yi‐Ling Huang Louise A. Huuki-Myers Ahyeon Hwang Thomas M. Hyde Artemis Iatrou Fumitaka Inoue Aarti Jajoo Matthew L. Jensen Lihua Jiang Peng Jin Ting Jin Connor Jops Alexandre Jourdon Riki Kawaguchi Joel E. Kleinman Steven P. Kleopoulos Alexey Kozlenkov Arnold R. Kriegstein Anshul Kundaje Soumya Kundu Che-Yu Lee Donghoon Lee Junhao Li

The complexity and heterogeneity of schizophrenia have hindered mechanistic elucidation the development more effective therapies. Here, we performed single-cell dissection schizophrenia-associated transcriptomic changes in human prefrontal cortex across 140 individuals two independent cohorts. Excitatory neurons were most affected cell group, with transcriptional converging on neurodevelopment synapse-related molecular pathways. Transcriptional alterations included known genetic risk...

10.1126/science.adg5136 article EN Science 2024-05-23
Chengyu Deng Sean Whalen Marilyn Steyert Ryan Ziffra Pawel F. Przytycki and 95 more Fumitaka Inoue Daniela A. Pereira Davide Capauto Scott Norton Flora M. Vaccarino Alex A. Pollen Tomasz J. Nowakowski Nadav Ahituv Katherine S. Pollard Schahram Akbarian Alexej Abyzov Nadav Ahituv Dhivya Arasappan José Juan Almagro Armenteros Brian J. Beliveau Jaroslav Bendl Sabina Berretta Rahul Bharadwaj Arjun Bhattacharya Lucy Bicks Kristen Brennand Davide Capauto Frances A. Champagne Tanima Chatterjee Chris Chatzinakos Yuhang Chen H. Isaac Chen Yuyan Cheng Lijun Cheng Andrew Chess Jo-fan Chien Zhiyuan Chu Declan Clarke Ashley Clement Leonardo Collado‐Torres Gregory M. Cooper Gregory E. Crawford Rujia Dai Nikolaos P. Daskalakis José Dávila-Velderrain Amy Deep–Soboslay Chengyu Deng Christopher P. DiPietro Stella Dracheva Shiron Drusinsky Ziheng Duan Duc M. Duong Cagatay Dursun Nicholas J. Eagles Jonathan I. Edelstein Prashant S. Emani John F. Fullard Kiki Galani Timur R. Galeev Michael J. Gandal Sophia C. Gaynor Mark Gerstein Daniel H. Geschwind Kiran Girdhar Fernando S. Goes William J. Greenleaf Jennifer Grundman Hanmin Guo Qiuyu Guo Chirag Gupta Yoav Hadas Joachim Hallmayer Xikun Han Vahram Haroutunian Natalie Hawken Chuan He Ella Henry Stephanie C. Hicks Marcus Ho Li‐Lun Ho Gabriel E. Hoffman Yi‐Ling Huang Louise A. Huuki-Myers Ahyeon Hwang Thomas M. Hyde Artemis Iatrou Fumitaka Inoue Aarti Jajoo Matthew L. Jensen Lihua Jiang Jin Peng Ting Jin Connor Jops Alexandre Jourdon Riki Kawaguchi Manolis Kellis Saniya Khullar Joel E. Kleinman Steven P. Kleopoulos Alexey Kozlenkov

Nucleotide changes in gene regulatory elements are important determinants of neuronal development and diseases. Using massively parallel reporter assays primary human cells from mid-gestation cortex cerebral organoids, we interrogated the cis-regulatory activity 102,767 open chromatin regions, including thousands sequences with cell type-specific accessibility variants associated brain regulation. In cells, identified 46,802 active enhancer 164 that alter activity. Activity was comparable...

10.1126/science.adh0559 article EN Science 2024-05-23
Louise A. Huuki-Myers Abby Spangler Nicholas J. Eagles Kelsey D. Montgomery Sang Ho Kwon and 95 more Boyi Guo Melissa Grant‐Peters Heena R. Divecha Madhavi Tippani Chaichontat Sriworarat Annie B. Nguyen Prashanthi Ravichandran Matthew N. Tran Arta Seyedian Thomas M. Hyde Joel E. Kleinman Alexis Battle Stephanie C. Page Mina Ryten Stephanie C. Hicks Keri Martinowich Leonardo Collado‐Torres Kristen R. Maynard Schahram Akbarian Alexej Abyzov Nadav Ahituv Dhivya Arasappan José Juan Almagro Armenteros Brian J. Beliveau Jaroslav Bendl Sabina Berretta Rahul Bharadwaj Arjun Bhattacharya Lucy Bicks Kristen Brennand Davide Capauto Frances A. Champagne Tanima Chatterjee Chris Chatzinakos Yuhang Chen H. Isaac Chen Yuyan Cheng Lijun Cheng Andrew Chess Jo-fan Chien Zhiyuan Chu Declan Clarke Ashley Clement Leonardo Collado‐Torres Gregory M. Cooper Gregory E. Crawford Rujia Dai Nikolaos P. Daskalakis José Dávila-Velderrain Amy Deep–Soboslay Chengyu Deng Christopher P. DiPietro Stella Dracheva Shiron Drusinsky Ziheng Duan Duc M. Duong Cagatay Dursun Nicholas J. Eagles Jonathan I. Edelstein Prashant S. Emani John F. Fullard Kiki Galani Timur R. Galeev Michael J. Gandal Sophia C. Gaynor Mark Gerstein Daniel H. Geschwind Kiran Girdhar Fernando S. Goes William Greenleaf Jennifer Grundman Hanmin Guo Qiuyu Guo Chirag Gupta Yoav Hadas Joachim Hallmayer Xikun Han Vahram Haroutunian Natalie Hawken Chuan He Ella Henry Stephanie C. Hicks Marcus Ho Li‐Lun Ho Gabriel E. Hoffman Yi‐Ling Huang Louise A. Huuki-Myers Ahyeon Hwang Thomas M. Hyde Artemis Iatrou Fumitaka Inoue Aarti Jajoo Matthew Jensen Lihua Jiang Peng Jin

The molecular organization of the human neocortex historically has been studied in context its histological layers. However, emerging spatial transcriptomic technologies have enabled unbiased identification transcriptionally defined domains that move beyond classic cytoarchitecture. We used Visium gene expression platform to generate a data-driven neuroanatomical atlas across anterior-posterior axis dorsolateral prefrontal cortex. Integration with paired single-nucleus RNA-sequencing data...

10.1126/science.adh1938 article EN Science 2024-05-23
Cindy Wen Michael Margolis Rujia Dai Pan Zhang Pawel F. Przytycki and 95 more Daniel Vo Arjun Bhattacharya Nana Matoba Miao Tang Chuan Jiao Minsoo Kim Ellen Tsai Celine Hoh Nil Aygün Rebecca L. Walker Christos Chatzinakos Declan Clarke Henry Pratt Mette A. Peters Mark Gerstein Nikolaos P. Daskalakis Zhiping Weng Andrew E. Jaffe Joel E. Kleinman Thomas M. Hyde Daniel R. Weinberger Nicholas J. Bray Nenad Šestan Daniel H. Geschwind Kathryn Roeder Alexander Gusev Bogdan Paşaniuc Jason L. Stein Michael I. Love Katherine S. Pollard Chunyu Liu Michael J. Gandal Schahram Akbarian Alexej Abyzov Nadav Ahituv Dhivya Arasappan José Juan Almagro Armenteros Brian J. Beliveau Jaroslav Bendl Sabina Berretta Rahul Bharadwaj Lucy Bicks Kristen Brennand Davide Capauto Frances A. Champagne Tanima Chatterjee Chris Chatzinakos Yuhang Chen H. Isaac Chen Yuyan Cheng Lijun Cheng Andrew Chess Jo-fan Chien Zhiyuan Chu Ashley Clement Leonardo Collado‐Torres Gregory M. Cooper Gregory E. Crawford José Dávila-Velderrain Amy Deep–Soboslay Chengyu Deng Christopher P. DiPietro Stella Dracheva Shiron Drusinsky Ziheng Duan Duc M. Duong Cagatay Dursun Nicholas J. Eagles Jonathan I. Edelstein Prashant S. Emani John F. Fullard Kiki Galani Timur R. Galeev Sophia C. Gaynor Kiran Girdhar Fernando S. Goes William J. Greenleaf Jennifer Grundman Hanmin Guo Qiuyu Guo Chirag Gupta Yoav Hadas Joachim Hallmayer Xikun Han Vahram Haroutunian Natalie Hawken Chuan He Ella Henry Stephanie C. Hicks Marcus Ho Li‐Lun Ho Gabriel E. Hoffman Yi‐Ling Huang Louise A. Huuki-Myers Ahyeon Hwang

Neuropsychiatric genome-wide association studies (GWASs), including those for autism spectrum disorder and schizophrenia, show strong enrichment regulatory elements in the developing brain. However, prioritizing risk genes mechanisms is challenging without a unified atlas. Across 672 diverse human brains, we identified 15,752 harboring gene, isoform, and/or splicing quantitative trait loci, mapping 3739 to cellular contexts. Gene expression heritability drops during development, likely...

10.1126/science.adh0829 article EN Science 2024-05-23

Given the high level of comorbidity attention deficit hyperactivity disorder (ADHD) and developmental coordination (DCD), deficits in executive function (EF), shown to be present children with ADHD, may also implicated motor DCD. The aim this study was explore relationship between EF ability. A sample 238 children, 121 girls 117 boys, aged 6 15 years recruited for project. Motor ability assessed using McCarron Assessment Neuromuscular Development (MAND), inattention Child Behavior Checklist...

10.1016/j.acn.2003.12.007 article EN Archives of Clinical Neuropsychology 2004-02-27

Background: The concept of the ‘broad phenotype’ autism refers to finding that relatives people with often have mild forms autistic‐like characteristics, such as social and communicative difficulties. This study used Autism Spectrum Quotient (AQ), a questionnaire devised assess features broad phenotype in adults, parents autism, see whether they would be more likely obtain extreme scores than control group. Methods: AQ was administered 69 an spectrum disorder 52 controls. Results: On two...

10.1111/j.1469-7610.2004.00325.x article EN Journal of Child Psychology and Psychiatry 2004-11-01
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