Yuzhou Feng

ORCID: 0000-0003-0735-2677
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About
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Research Areas
  • Geological and Geochemical Analysis
  • Geochemistry and Geologic Mapping
  • earthquake and tectonic studies
  • Geochemistry and Elemental Analysis
  • Genomics and Phylogenetic Studies
  • Microbial Community Ecology and Physiology
  • High-pressure geophysics and materials
  • Radioactive element chemistry and processing
  • Plant-Microbe Interactions and Immunity
  • Geomagnetism and Paleomagnetism Studies
  • Clay minerals and soil interactions
  • vaccines and immunoinformatics approaches
  • RNA Research and Splicing
  • Extraction and Separation Processes
  • Advanced Condensed Matter Physics
  • SARS-CoV-2 and COVID-19 Research
  • Single-cell and spatial transcriptomics
  • Crystal Structures and Properties
  • Microbial Metabolism and Applications
  • Monoclonal and Polyclonal Antibodies Research
  • Probiotics and Fermented Foods
  • Plant Disease Resistance and Genetics
  • Zebrafish Biomedical Research Applications
  • Immune cells in cancer
  • Immunotherapy and Immune Responses

University of Saskatchewan
2023-2025

Yunnan Agricultural University
2025

West China Medical Center of Sichuan University
2020-2024

Shihezi University
2024

Chinese Academy of Sciences
2019-2024

Guangzhou Institute of Geochemistry
2018-2024

Yunnan University
2018-2024

University of Chinese Academy of Sciences
2019-2024

Sichuan University
2022-2023

Guangdong Institute of New Materials
2023

In recent years, the explosive growth of spatial technologies has enabled characterization heterogeneity tissue architectures. Compared to traditional sequencing, transcriptomics reserves information each captured location and provides novel insights into diverse spatially related biological contexts. Even though two databases exist, they provide limited analytical information. Information such as genes cells, cell-cell communication activities in space, cell type compositions...

10.1093/nar/gkac889 article EN cc-by Nucleic Acids Research 2022-10-16

The coronavirus disease of 2019 pandemic has catalyzed the rapid development mRNA vaccines, whereas, how to optimize sequence exogenous gene such as severe acute respiratory syndrome 2 spike fit human cells remains a critical challenge. A new algorithm, iDRO (integrated deep-learning-based optimization), is developed multiple components sequences based on given amino acid target protein. Considering biological constraints, we divided into two steps: open reading frame (ORF) optimization and...

10.1093/bib/bbad001 article EN Briefings in Bioinformatics 2023-01-01

The northeastern Hunan region in the Jiangnan Orogen (South China) is endowed with many important gold deposits, whose genesis remains controversial. Xiaojiashan a representative deposit (7.77 t Au @ 2.88 g/t) NE Hunan, and characterized by multi-stage pyrite formation. Its mineralization can be divided into 3 stages: (I) quartz-ankerite-pyrite-gold; (II) quartz-ankerite-polymetallic sulfide-gold; (III) quartz-ankerite stage. Three generations were identified: fine-grained porous Py1...

10.1016/j.oregeorev.2022.104843 article EN cc-by-nc-nd Ore Geology Reviews 2022-03-15

The COVID-19 pandemic, caused by the coronavirus SARS-CoV-2, has resulted in loss of millions lives and severe global economic consequences. Every time SARS-CoV-2 replicates, viruses acquire new mutations their genomes. Mutations genomes led to increased transmissibility, disease outcomes, evasion immune response, changes clinical manifestations reducing efficacy vaccines or treatments. To date, multiple resources provide lists detected without key functional annotations. There is a lack...

10.1093/nar/gkad958 article EN cc-by-nc Nucleic Acids Research 2023-10-28

Abstract Several groups of bacteria have complex life cycles involving cellular differentiation and multicellular structures. For example, actinobacteria the genus Streptomyces form vegetative hyphae, aerial spores. However, similar not yet been described for archaea. Here, we show that several haloarchaea family Halobacteriaceae display a cycle resembling bacteria. Strain YIM 93972 (isolated from salt marsh) undergoes into mycelia Other closely related strains are also able to mycelia,...

10.1038/s41467-023-37389-w article EN cc-by Nature Communications 2023-04-01

Abstract Heavy rare earth elements (HREE), as critical materials for the global transition to a low-carbon economy, are mostly supplied by regolith-hosted ion adsorption deposits formed from weathering of granites. Magmatic-hydrothermal titanite pronounced HREE enrichment in granites has been suggested play an important role forming HREE-dominated deposits. However, crystal-chemical mechanism and geological process responsible remain unknown. This study investigated two texturally distinct...

10.2138/am-2024-9645 article EN American Mineralogist 2025-01-29

Widespread regolith cover makes it difficult to identify the anomalous size of their mineralogical or geochemical footprint at surface in gold exploration. Short wavelength infrared (SWIR) spectroscopy with effective identification clays and other hydrous minerals shows potential application The detailed geological short mapping was conducted newly-discovered orogenic-type Mailong deposit (13.06 t @ 6.29 g/t Au), East Kunlun, determine alteration stage mineral assemblages discuss values SWIR...

10.1016/j.oregeorev.2024.106080 article EN cc-by-nc-nd Ore Geology Reviews 2024-05-15

Fusarium species are among the most significant pathogens causing root rot in Panax notoginseng. In this study, a strain of Trichoderma hamatum was isolated from rhizosphere soil P. notoginseng and subjected to whole-genome sequencing. Plate confrontation experiments were conducted investigate antagonistic effects T. against oxysporum, solani, acutatum, primary rot. Whole-genome sequencing revealed 10,774 predicted genes hamatum, which 454 associated with carbohydrate-active enzymes...

10.3390/jof11020126 article EN cc-by Journal of Fungi 2025-02-08

The B115 strain, isolated from the inter-root soil of healthy plants in a continuous cropping site Panax notoginseng, was identified as Bacillus velezensis by 16S rDNA sequence comparison and comparative genomic analysis. is strain beneficial microorganisms present zone plants, with favorable plant growth-promoting properties antagonistic effects against pathogen Fusarium oxysporum. However, whole genome remains unclear, thus restricting its potential applications. To address this gap, has...

10.1038/s41598-025-92322-z article EN cc-by-nc-nd Scientific Reports 2025-03-28

Regolith-hosted rare earth element (REE) deposits are common in South China. The newly-discovered Gucheng REE deposit the western part of Guangdong Province, is characterized by HREE enrichment (with ∑HREE oxides 55%). Three types granites have been identified ore district, a REE-fertile coarse-grained biotite granite (CGBG), weakly fine-grained (FGBG) and barren medium-grained (MGBG). New LA-ICP-MS zircon U-Pb dating reveals that MGBG (107.7 ± 0.4 Ma), CGBG (103.2 0.6 Ma) FGBG (98.9 0.7...

10.1016/j.oregeorev.2022.105034 article EN cc-by-nc-nd Ore Geology Reviews 2022-07-22

Antibodies play a pivotal role in immune defense and serve as key therapeutic agents. The process of affinity maturation, wherein antibodies evolve through somatic mutations to achieve heightened specificity target antigens, is crucial for effective response. Despite their significance, assessing antibody-antigen binding remains challenging due limitations conventional wet lab techniques. To address this, we introduce AntiFormer, graph-based large language model designed predict antibody...

10.1093/bib/bbae403 article EN cc-by-nc Briefings in Bioinformatics 2024-07-25

Abstract Background Sexual differences across molecular levels profoundly impact cancer biology and outcomes. Patient gender significantly influences drug responses, with divergent reactions between men women to the same drugs. Despite databases on sex in human tissues, understanding regulations of disparities is limited. These resources lack detailed mechanistic studies sex-biased molecules. Methods In this study, we conducted a comprehensive examination distinctions regulatory networks 27...

10.1186/s13293-024-00638-8 article EN cc-by Biology of Sex Differences 2024-08-22
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