Yuuki Kobayashi

ORCID: 0000-0003-1061-3639
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About
Contact & Profiles
Research Areas
  • Mycorrhizal Fungi and Plant Interactions
  • Plant Pathogens and Fungal Diseases
  • Fungal Biology and Applications
  • Forest Ecology and Biodiversity Studies
  • Yeasts and Rust Fungi Studies
  • Plant Disease Resistance and Genetics
  • Plant Parasitism and Resistance
  • Plant Pathogens and Resistance
  • Plant and animal studies
  • Plant Physiology and Cultivation Studies
  • Plant Molecular Biology Research
  • Banana Cultivation and Research
  • Insect-Plant Interactions and Control
  • Insect and Arachnid Ecology and Behavior
  • Plant Reproductive Biology
  • Plant-Microbe Interactions and Immunity
  • Plant pathogens and resistance mechanisms
  • Dendrimers and Hyperbranched Polymers
  • Composting and Vermicomposting Techniques
  • Horticultural and Viticultural Research
  • Fungal Plant Pathogen Control
  • Molecular Biology Techniques and Applications
  • Legume Nitrogen Fixing Symbiosis
  • Insect symbiosis and bacterial influences
  • Forensic and Genetic Research

Tokyo University of Agriculture
2023-2025

National Institute for Basic Biology
2017-2023

Akita University
2018

Fukuoka University
2017

The University of Tokyo
2011

Max Planck Institute for Biological Cybernetics
2009

Max Planck Society
2009

Kitasato University
1994-1996

Tochigi Prefectural Fisheries Experimental Station
1966

Mycorrhizal symbiosis is one of the most fundamental types mutualistic plant-microbe interaction. Among many classes mycorrhizae, arbuscular mycorrhizae have general symbiotic style and longest history. However, genomes mycorrhizal (AM) fungi are not well characterized due to difficulties in cultivation genetic analysis. In this study, we sequenced genome AM fungus Rhizophagus clarus HR1, compared sequence with model species R. irregularis, checked for missing genes that encode enzymes...

10.1186/s12864-018-4853-0 article EN cc-by BMC Genomics 2018-06-18

Abstract Arbuscular mycorrhizal (AM) symbiosis is a mutually beneficial interaction between fungi and land plants promotes global phosphate cycling in terrestrial ecosystems. AM are recognised as obligate symbionts that require root colonisation to complete life cycle involving the production of propagules, asexual spores. Recently, it has been shown Rhizophagus irregularis can produce infection-competent secondary spores asymbiotically by adding fatty acid, palmitoleic acid. Furthermore,...

10.1038/s42003-021-02967-5 article EN cc-by Communications Biology 2022-01-12

Arbuscular mycorrhizal fungus (AMF) species are some of the most widespread symbionts land plants. Our much improved reference genome assembly a model AMF, Rhizophagus irregularis DAOM-181602 (total contigs = 210), facilitated discovery repetitive elements with unusual characteristics. R. has only ten or 11 copies complete 45S rDNAs, whereas general eukaryotic tens to thousands rDNA copies. rDNAs highly heterogeneous and lack tandem repeat structure. These findings provide evidence for...

10.1038/s42003-018-0094-7 article EN cc-by Communications Biology 2018-06-28

In higher plants, many extracellular proteins are involved in developmental processes, including cell–cell signaling and cell wall construction. Xylogen is an arabinogalactan protein (AGP) isolated from Zinnia elegans xylogenic culture medium, which promotes xylem differentiation. has a unique structure, containing non-specific lipid transfer (nsLTP) domain AGP domains. We searched for xylogen-type genes the genomes of land Arabidopsis thaliana, to further our knowledge as functional plants....

10.1093/pcp/pcr060 article EN Plant and Cell Physiology 2011-05-10

ABSTRACT In dimorphic yeasts, hyphal growth is primarily associated with infection and mycosis progression, Trichosporon asahii causing deep-seated summer-type hypersensitivity pneumonitis. Magnesium accelerates in T. , leading to multi-septation, vacuolar expansion, decreased lipid droplet size. However, the commonality of these phenotypes has not been studied Trichosporonales yeasts. Therefore, explore whether similar magnesium-induced occur across we examined growth, extension, size...

10.1128/spectrum.03210-24 article EN cc-by Microbiology Spectrum 2025-02-25

Abstract Wolbachia , a widespread endosymbiotic bacterium that infects broad range of arthropods and nematodes, relies on vertical transmission from mother to offspring. This process often involves colonization the host germline, subsequent transfer developing oocytes, utilization yolk protein transport mechanisms such as vitellogenin uptake. However, strategies employed by in viviparous insects aphids are poorly understood. Here, we demonstrate novel mode cedar bark aphid Cinara cedri...

10.1101/2025.04.14.648810 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2025-04-19

Abstract Background Since DNA information was first used in taxonomy, barcode sequences such as the internal transcribed spacer (ITS) region have greatly aided fungal identification; however, a sequence alone is often insufficient. Thus, multi-gene- or whole-genome-based methods were developed. We previously isolated Basidiomycota yeasts classified Trichosporonales. Some strains described Cutaneotrichosporon cavernicola and C. spelunceum , whereas strain HIS471 remained unidentified....

10.1186/s12864-023-09718-2 article EN cc-by BMC Genomics 2023-10-11

Abstract The Japanese rhinoceros beetle Trypoxylus dichotomus is a giant with distinctive exaggerated horns present on the head and prothoracic regions of male. T. has been used as research model in various fields such evolutionary developmental biology, ecology, ethology, biomimetics, drug discovery. In this study, de novo assembly 615 Mb, representing 80% genome estimated by flow cytometry, was obtained using 10 × Chromium platform. scaffold N50 length 8.02 repetitive elements predicted to...

10.1038/s41598-023-35246-w article EN cc-by Scientific Reports 2023-05-30

Mycorrhizae are one of the most fundamental symbioses between plants and fungi, with ectomycorrhizae being widespread in boreal forest ecosystems. Ectomycorrhizal fungi hypothesized to have evolved convergently from saprotrophic ancestors several fungal clades, especially members subdivision Agaricomycotina. Studies on genomes identified typical characteristics mycorrhizal such as genome size expansion decreases plant cell-wall degrading enzymes (PCWDEs). However, genomic changes concerning...

10.1093/dnares/dsac053 article EN cc-by-nc DNA Research 2023-01-05

Abstract The lifetime development of the waggle dance 14 honeybees was automatically recorded just after imaginal molt using high-definition camera modules connected with a Raspberry Pi computer and numbered radio-frequency identification tags fitted to back each bee. For most honeybees, follow preceded appearance first from 1 week molt. duration per trip increased follow. Before dance, honeybee repeatedly follows dances that indicate limited number (2–6) food source locations. We...

10.1101/179408 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2017-08-22

The protein-bound polysaccharide of Coriolus versicolor QUEL (PS_K) expresses superoxide dismutase (SOD) mimicking activity. Examination was made the effects PS-K on cancer cell lines following administration anti-cancer drug cisdiaminedichloroplatinum (cisplatin). Cell proliferation each line inhibited markedly by cisplatin from 0.5 to 5 micrograms/0.5 ml per well. Fifty percent inhibitory concentration (IC50) 0.33 well in NRK-49F and human ovarian cells, 1.5 H4-II-E. 50 prevented...

10.1089/cbr.1994.9.351 article EN Cancer Biotherapy 1994-01-01

Abstract Arbuscular mycorrhizal (AM) symbiosis is a mutually beneficial interaction between fungi and land plants promotes global phosphate cycling in terrestrial ecosystems. AM are recognised as obligate symbionts that require root colonisation to complete life cycle involving the production of propagules, asexual spores. Recently it has been shown Rhizophagus irregularis can produce infection-competent secondary spores asymbiotically by adding fatty acid, palmitoleic acid. Further,...

10.1101/2020.12.25.424379 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2020-12-26

ABSTRACT The surface properties and antiplatelet adhesion behavior of terminally functionalized hyperbranched poly( l ‐lactide)s (HB PLLA n ‐Glu, = 5, 10, 20) were examined. Contact angle changes X‐ray photoelectron spectroscopic measurements indicated that the hydrated glutamic acid units in HB ‐Glu films migrated to during immersing water unique microdomains observed from PLLA10‐Glu film after immersion. PLLA5‐Glu prevented platelet adhesion, but PLLA20‐Glu showed typical response for a...

10.1002/app.46910 article EN Journal of Applied Polymer Science 2018-09-03

The Orchidaceae is one of the most famous garden plants, and improvement orchid very important in horticulture field. However, molecular information largely unknown. We found a Phalaenopsis variety harboring floral organs showing C class homeotic change. Column composed anthers with receptive stigmatic surface just underneath them wild type. However produced column sepal or petal like structure at abaxial side. This typical abnormality as mutants plants. Further, type looking revertant was...

10.1266/ggs.86.93 article EN Genes & Genetic Systems 2011-01-01

Abstract The ribosomal RNA-encoding gene (rDNA) has a characteristic genomic nature: tens to thousands of copies in genome, tandemly repeated structure, and intragenomic sequence homogeneity. These features contribute ribosome productivity via physiological evolutionary processes. We reported previously the exceptional absence these model arbuscular mycorrhizal (AM) fungus Rhizophagus irregularis. Here we examine phylogenetic distribution rDNA genus improving genome R. clarus. Cross-species...

10.1101/2020.05.14.095489 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2020-05-15

Fungi in the genus Termitomyces are external symbionts of fungus-growing termites. The three rhizogenic species T. eurrhizus, clypeatus, and intermedius, one similar to microcarpus that lacks pseudorrhiza, have been reported from Ryukyu Archipelago, Japan. In contrast, only two genetic groups (types A B) vegetative mycelia detected nests termite Odontotermes formosanus. this study, we investigated relationships between mycelial basidiomata samples Archipelago. We found all basidioma...

10.47371/mycosci.2021.11.001 article EN Mycoscience 2021-12-17

Abstract Arbuscular mycorrhizal fungus (AMF) species are one of the most widespread symbionts land plants. Our substantially improved reference genome assembly a model AMF, Rhizophagus irregularis DAOM-181602 (total contigs = 210), facilitated discovery repetitive elements with unusual characteristics. R. has only ten or eleven copies complete 45S rDNAs, whereas general eukaryotic tens to thousands rDNA copies. rDNAs highly heterogeneous and lack tandem repeat structure. These findings...

10.1101/205864 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2017-10-19

ISHS International Symposium on Asian Pears, Commemorating the 100th Anniversary of Nijisseiki Pear EFFECT OF INTERMITTENT WARM PERIODS ON BUD BREAK AND CARBOHYDRATE CONTENTS JAPANESE PEAR (PYRUS PYRIFOLIA NAKAI) AT DIFFERENT ENDODORMANCY STAGES

10.17660/actahortic.2002.587.53 article EN Acta Horticulturae 2002-10-01
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