A5078286642- Genetic Mapping and Diversity in Plants and Animals
- Chromosomal and Genetic Variations
- Genomics and Phylogenetic Studies
- Bioenergy crop production and management
- Remote Sensing in Agriculture
- Biofuel production and bioconversion
- Rice Cultivation and Yield Improvement
- Bamboo properties and applications
- Advanced biosensing and bioanalysis techniques
- interferon and immune responses
- Plant Taxonomy and Phylogenetics
- Genetic diversity and population structure
- GABA and Rice Research
- Wheat and Barley Genetics and Pathology
- Genetic and phenotypic traits in livestock
- Food composition and properties
- RNA and protein synthesis mechanisms
- Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities
- Smart Agriculture and AI
- Physiological and biochemical adaptations
- Aquaculture disease management and microbiota
- Remote Sensing and LiDAR Applications
- Photosynthetic Processes and Mechanisms
- Genetics and Plant Breeding
- Neurobiology and Insect Physiology Research
Chinese Academy of Sciences
2012-2025
Center for Excellence in Molecular Plant Sciences
2012-2025
National Center for Gene Research
2012-2025
Shanghai Institutes for Biological Sciences
2012-2021
Karolinska Institutet
2015
Kim Il-sung University
2015
Pyongyang University of Science and Technology
2015
University of Lausanne
2015
Crop domestications are long-term selection experiments that have greatly advanced human civilization. The domestication of cultivated rice (Oryza sativa L.) ranks as one the most important developments in history. However, its origins and processes controversial long been debated. Here we generate genome sequences from 446 geographically diverse accessions wild species Oryza rufipogon, immediate ancestral progenitor rice, 1,083 indica japonica varieties to construct a comprehensive map...
The rich genetic diversity in Oryza sativa and rufipogon serves as the main sources rice breeding. Large-scale resequencing has been undertaken to discover allelic variants rice, but much of information for variation is often lost by direct mapping short sequence reads onto O. japonica Nipponbare reference genome. Here we constructed a pan-genome dataset sativa-O. species complex through deep sequencing de novo assembly 66 divergent accessions. Intergenomic comparisons identified 23 million...
Bin Han and colleagues report the draft genome of moso bamboo, an important non-timber forest product. RNA sequencing analysis bamboo flowering tissues suggests a connection between drought-responsive genes potential genes. Bamboo represents only major lineage grasses that is native to forests one most products in world. However, no species Bambusoideae subfamily has been sequenced. Here, we high-quality sequence (P. heterocycla var. pubescens). The 2.05-Gb assembly covers 95% genomic...
Bin Han and colleagues report the draft genome sequence of grass carp Ctenopharyngodon idellus, a major commercially farmed species freshwater fish. Analyses identify lineage-specific duplications that may have contributed to adaptation this vegetarian diet. The is an important fish, accounting for ∼16% global aquaculture, has Here we 0.9-Gb gynogenetic female adult 1.07-Gb wild male adult. Genome annotation identified 27,263 protein-coding gene models in genome. A total 114 scaffolds...
Abstract Non-random gene organization in eukaryotes plays a significant role genome evolution. Here, we investigate the origin of biosynthetic cluster for production defence compounds oat—the avenacin cluster. We elucidate structure and organisation this 12-gene cluster, characterise last two missing pathway steps, reconstitute entire tobacco by transient expression. show that has formed de novo since divergence oats subtelomeric region lacks homology with other grasses, order is...
Miscanthus, a rhizomatous perennial plant, has great potential for bioenergy production its high biomass and stress tolerance. We report chromosome-scale assembly of Miscanthus lutarioriparius genome by combining Oxford Nanopore sequencing Hi-C technologies. The 2.07-Gb covers 96.64% the genome, with contig N50 1.71 Mb. centromere telomere sequences are assembled all 19 chromosomes chromosome 10, respectively. Allotetraploid origin M. is confirmed using centromeric satellite repeats....
Summary Low‐altitude aerial imaging, an approach that can collect large‐scale plant imagery, has grown in popularity recently. Amongst many phenotyping approaches, unmanned vehicles (UAVs) possess unique advantages as a consequence of their mobility, flexibility and affordability. Nevertheless, how to extract biologically relevant information effectively remained challenging. Here, we present A ir M easurer , open‐source expandable platform combines automated image analysis, machine learning...
Oryza rufipogon, the wild progenitor of Asian cultivated rice sativa, is an important resource for breeding1. Here we present a wild-cultivated pangenome based on 145 chromosome-level assemblies, comprising 129 genetically diverse O. rufipogon accessions and 16 varieties sativa. This contains 3.87 Gb sequences that are absent from sativa ssp. japonica cv. Nipponbare reference genome. We captured alternate assemblies include heterozygous information missing in primary identified total 69,531...
Introduction Rice ( Oryza sativa ) serves as a vital staple crop that feeds over half the world's population. Optimizing rice breeding for increasing grain yield is critical global food security. Heading-date-related or Flowering-time-related traits, key factor determining potential. However, traditional manual phenotyping methods these traits are time-consuming and labor-intensive. Method Here we show aerial imagery from unmanned vehicles (UAVs), when combined with deep learning-based...
Abstract The genus Miscanthus , a rhizomatous perennial plant, has great potential for bio-energy production its high biomass yield and strong stress resistance. Here, we generated the first chromosome-scale assembly of lutarioriparius Nandi by combining Oxford Nanopore sequencing Hi-C technologies. 2.07-Gb covers 96.64% genome, with contig N50 1.71 Mb. By utilizing data, 1,956.46 Mb (94.30%) assembled sequences were anchored oriented to 19 pseudochromosomes haploid M. . diploid was...