A5071670784- Genetic diversity and population structure
- Genomics and Phylogenetic Studies
- Horticultural and Viticultural Research
- Fermentation and Sensory Analysis
- Plant-Microbe Interactions and Immunity
- Chromosomal and Genetic Variations
- Plant Reproductive Biology
- Genetic and phenotypic traits in livestock
- Livestock and Poultry Management
- Plant biochemistry and biosynthesis
- Fungal Biology and Applications
- Plant and animal studies
- Plant Physiology and Cultivation Studies
- Plant Diversity and Evolution
- Mycotoxins in Agriculture and Food
- Wine Industry and Tourism
- Plant Pathogens and Resistance
- Genetic Mapping and Diversity in Plants and Animals
- Fungal Plant Pathogen Control
- Plant Pathogenic Bacteria Studies
- Plant tissue culture and regeneration
- Tea Polyphenols and Effects
- Plant Molecular Biology Research
- Bioactive natural compounds
- Ginger and Zingiberaceae research
Yunnan Agricultural University
2018-2025
Yunnan University
2023-2025
Xishuangbanna Tropical Botanical Garden
2023
Yunnan Machinery Research and Design Institute
2021
Kunming University of Science and Technology
2016
Phylogeny and characteristics of ruminants Ruminants are a diverse group mammals that includes families containing well-known taxa such as deer, cows, goats. However, their evolutionary relationships have been contentious, the origins distinctive digestive systems headgear, including antlers horns (see Perspective by Ker Yang). To understand among ruminants, L. Chen et al. sequenced 44 species representing 6 performed phylogenetic analysis. From this analysis, they were able to resolve...
Abstract Understanding the Vitis species at genomic level is important for cultivar improvement of grapevine. Here we report whole-genome genetic variation single-base resolution 472 accessions, which cover 48 out 60 extant from a wide geographic distribution. The helps to identify recent dramatic expansion and contraction effective population size in domesticated grapevines that cultivars pan-Black Sea region have unique demographic history comparison other cultivars. We also find selective...
We elucidate grapevine evolution and domestication histories with 3525 cultivated wild accessions worldwide. In the Pleistocene, harsh climate drove separation of grape ecotypes caused by continuous habitat fragmentation. Then, occurred concurrently about 11,000 years ago in Western Asia Caucasus to yield table wine grapevines. The domesticates dispersed into Europe early farmers, introgressed ancient western ecotypes, subsequently diversified along human migration trails muscat unique...
Macrofungus is defined as the fungus that grows an observable sporocarp. The sporocarps of many species are commonly called mushrooms and consumed by people all around world food and/or medicine. Most macrofungi belong to divisions Basidiomycetes Ascomycetes, which estimated contain more than 80,000 in total. We report draft genome assemblies (83 7 Ascomycetes species) based on Illumina sequencing. sizes these ranged from 27.4 Mb (Hygrophorus russula) 202.2 MB (Chroogomphus rutilus). numbers...
Abstract Cerasus is a subgenus of Prunus in the family Rosaceae that popular owing to its ornamental, edible, and medicinal properties. Understanding evolution identifying selective trait loci edible cherries are crucial for improvement cherry cultivars meet producer consumer demands. In this study, we performed de novo assembly chromosome-scale genome sweet ( avium L . ) cultivar ‘Burlat’, covering 297.55 Mb consisting eight chromosomes with 33,756 protein-coding genes. The resequencing...
Panax notoginseng (2n = 2x 24), reputed as a valuable medicinal plant, belongs to the Araliaceae family (Figure 1a). P. has been used traditional Chinese medicine with obvious efficacy and favourable safety. Currently, is an important material of many well-known patent medicines including Xuesaitong, Yunnan Baiyao Compound Danshen Dripping Pills (Xu et al., 2019). Triterpenoid saponins (TSs) dencichine are main bioactive compounds in notoginseng. The therapeutic effects TSs include...
Phytophthora cactorum is a homothallic oomycete pathogen, which has wide host range and high capability to adapt defense compounds fungicides. Here we report the 121.5 Mb genome assembly of P. using third-generation single-molecule real-time (SMRT) sequencing technology. It second largest sequenced so far in genera, contains 27,981 protein-coding genes. Comparison with other genomes showed that had closer relationship parasitica, infestans capsici. similar gene families secondary metabolism...
The genus Alternaria is a group of infectious/contagious pathogenic fungi that not only invade wide range crops but also induce severe allergic reactions in part the human population. In this study, two strains longipes cx1 and alternata cx2 were isolated from different brown spot lesions on infected tobacco leaves. Their complete genomes sequenced, de novo assembled, comparatively analyzed. Phylogenetic analysis revealed A. diverged 3.3 million years ago, indicating recent event speciation....
Abstract Fetal bovine serum (FBS) shows obvious deficiencies in cell culture, such as low batch to consistency, adventitious biological contaminant risk and high cost, which severely limit the development of culture industry. Sericin protein derived from silkworm cocoon has become increasingly popular due its diverse beneficial characteristics. However, systematic evaluation sericin a substitute for FBS medium remains limited. In this study, we conducted cellular morphological, physiological...
<title>Abstract</title> In many flowering plants, male and female reproductive organs mature at different times to avoid self-pollination, a phenomenon termed dichogamy. Most dichogamous species are either protandrous (male function first) or protogynous (female first), making this strategy difficult be studied. However, in the ginger <italic>Alpinia mutica</italic>, morphotypes co-occur within populations cross-pollinate one another. Here, we demonstrate that single Mendelian locus with...
Abstract Euglena gracilis ( E. ), pivotal in the study of photosynthesis, endosymbiosis, and chloroplast development, is also an industrial microalga for paramylon production. Despite its importance, genome exploration faces challenges due to intricate nature. In this study, we achieved a chromosome-level de novo assembly (2.37 Gb) using Illumina, PacBio, Bionano, Hi-C data. The exhibited contig N50 619 Kb scaffold 1.12 Mb, indicating superior continuity. Approximately 99.83% was anchored 46...
Abstract Erigeron breviscapus is an important medicinal plant in Compositae and the first species to realize whole process from decoding of draft genome sequence scutellarin biosynthesis yeast. However, previous low‐quality assembly has hindered optimization candidate genes involved synthesis development molecular‐assisted breeding based on genome. Here, E. was updated using PacBio RSII sequencing data Hi‐C data, increased size 1.2 Gb 1.43 Gb, with a scaffold N50 156.82 Mb contig 140.95 kb,...
Abstract Tobacco brown spot caused by Alternaria fungal species is one of the most damaging diseases, and results in significant yield losses. However, little known about systematic response tobacco to this infection. To fill knowledge gap, de novo assemblies leaf transcriptomes were obtained cultivars V2 NC89 after inoculation either longipes (AL) or alternata (AA) at three different time points. We studied gene expression profile each cultivar-pathogen combination, identified eight...
Grapevine (Vitis vinifera) is one of the most important fruit species in Classical Mediterranean world. It thought to have been domesticated 6,000-8,000 years ago Near East. However, domestication its wild relative into wine grapes or table remains largely unknown. In this study, we analyzed 30 grapes, dual-purpose grape accessions, as well relatives vinifera ssp. sylvestris). The phenotypic comparison showed striking differences berry weight, acidity and content aroma. Based on a total...
Andrographis paniculata (Chinese name: Chuanxinlian) is an annual dicotyledonous medicinal plant widely grown in China and Southeast Asia. The dried has a highly acclaimed usage the traditional Chinese medicine for its antipyretic, anti-inflammatory, analgesic effects. In order to help delineate biosynthetic pathways of various secondary metabolites, we report this study high-quality reference genome A. paniculata. With both PacBio single molecule real time sequencing Illumina reads error...
The Muscovy duck (Cairina moschata) is an economically important poultry species, which susceptible to fatty liver. Thus, the may serve as excellent candidate animal model of non-alcoholic liver disease. However, mechanisms underlying development in this species are poorly understood. In study, we report a chromosome-level genome assembly duck, with contig N50 11.8 Mb and scaffold 83.16 Mb. susceptibility was mainly attributed weak lipid catabolism capabilities (fatty acid β-oxidation...
Lamiales, comprising over 23,755 species across 24 families, stands as a highly diverse and prolific plant group, playing significant role in the cultivation of horticultural, ornamental, medicinal varieties. Whole-genome duplication (WGD) its subsequent post-polyploid diploidization (PPD) process represent most drastic type karyotype evolution, injecting potential for promoting diversity this lineage. However, polyploidization histories, well genome subgenome fractionation following WGD...
Cobitoidea is one of the two superfamilies in Cypriniformes; however, few genomes have been sequenced for fishes. Here, we obtained a total 252.90 Gb short Illumina reads and 31.60 long PacBio Sequel reads, representing approximate genome coverage 256× 50×, respectively. The final assembled about 583.47 Mb with contig N50 sizes 2.87 Mb, which accounts 91.44% estimated size 638.07 Mb. Using Hi-C-based chromatin contact maps, 99.31% assembly was placed into 25 chromosomes, 22.3 gene annotation...
Camellia is an economically important crop that has been highly valued by human society for a long time. It encompasses various species, such as the magical oriental leaves (Camellia sect. Thea), garden of royalties japonica) and oil-seed oleifera)(Macfarlane, 2004). Despite history cultivation some species worldwide, our understanding their genetic variation was limited until end 20th century, when developments in genomics sequencing technologies emerged.
Domestication of the helmeted guinea fowl (HGF; Numida meleagris) in Africa remains elusive. Here we report a high-quality de novo genome assembly for domestic HGF generated by long- and short-reads sequencing together with optical chromatin interaction mapping. Using this as reference, performed population genomic analyses newly sequenced whole-genomes 129 birds from Africa, Asia, Europe, including animals (n = 89), wild progenitors 34), their closely related species 6). Our results reveal...
The genus
Phylogeographic, population genetics and diversity analysis are crucial for local tea resource conservation breeding programs. Lincang in Yunnan has been known as the possible place of domestication worldwide, yet, its genetic makeup unique origin little understood. Here, we reported a large-scale whole-genome resequencing based genomic eight main tea-producing areas (1,350 accessions), first comprehensive map genome variation was constructed. Based on structure, sample divided into three...
Landraces are important resources for breeding programs. However, the diversity harbored at genomic level by landraces is yet to be analyzed. Here we sequenced more than 200 individual plants from long-lasting and durably resistant rice landrace Acuce (Oryza sativa subsp. indica). We found that exhibits levels as high 38% of entire indica sub-species. pinpoint signatures selection in favor polymorphism associated with resistance, but not other agronomic trait genes. Furthermore, provide...