Adam J. Kleinschmit

ORCID: 0000-0003-3820-524X
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About
Contact & Profiles
Research Areas
  • Genetics, Bioinformatics, and Biomedical Research
  • Biomedical and Engineering Education
  • Innovative Teaching Methods
  • Scientific Computing and Data Management
  • Career Development and Diversity
  • Problem and Project Based Learning
  • CRISPR and Genetic Engineering
  • Genomics and Phylogenetic Studies
  • Educational Strategies and Epistemologies
  • Fluoride Effects and Removal
  • SARS-CoV-2 detection and testing
  • Machine Learning in Bioinformatics
  • Memory Processes and Influences
  • Single-cell and spatial transcriptomics
  • Service-Learning and Community Engagement
  • Interdisciplinary Research and Collaboration
  • Experimental Learning in Engineering
  • Grit, Self-Efficacy, and Motivation
  • Nutrition, Genetics, and Disease
  • Mine drainage and remediation techniques
  • Digital Storytelling and Education
  • RNA and protein synthesis mechanisms
  • Vaccine Coverage and Hesitancy
  • Visual and Cognitive Learning Processes
  • Misinformation and Its Impacts

University of Dubuque
2020-2025

Adams State University
2014-2020

There is widespread agreement that science, technology, engineering, and mathematics programs should provide undergraduates with research experience. Practical issues limited resources, however, make this a challenge. We have developed bioinformatics project provides course-based experience for students at diverse group of schools offers the opportunity to tailor local curriculum institution-specific student needs. assessed both attitude knowledge gains, looking insights into how respond...

10.1187/cbe-13-08-0152 article EN cc-by-nc-sa CBE—Life Sciences Education 2014-03-01

Abstract The preparation of future scientists, the technical workforce, and informed citizens will require continued transformation to ways we approach STEM teaching learning. Undergraduate education is rapidly emerging as a focus faculty scholarship, but new models for reform need be developed tested accelerate changes in practices. This paper describes flexible, participant-driven, multi-phase, collaborative developing open educational resources (OERs) that leverages linked communities...

10.1186/s40594-023-00405-y article EN cc-by International Journal of STEM Education 2023-02-22

Genomics is an increasingly important part of biology research. However, educating undergraduates in genomics not yet a standard life sciences curricula. We believe this is, part, due to lack concepts for the teaching genomics. To address deficit, members Education Alliance created set that was then further refined by input from community undergraduate educators who engage instruction. The final list compared existing learning frameworks, including Vision and Change initiative (V&C), as...

10.1371/journal.pone.0313124 article EN cc-by PLoS ONE 2025-01-09
David Lopatto Anne Rosenwald Justin R. DiAngelo Amy T. Hark Matthew P. Skerritt and 95 more Matthew Wawersik Anna K. Allen Consuelo J. Alvarez Sara Anderson Cindy Arrigo Andrew M. Arsham Daron Barnard Christopher Bazinet James E. J. Bedard Indrani Bose John M. Braverman Martin G. Burg Rebecca C. Burgess Paula Croonquist Chunguang Du Sondra Dubowsky Heather Eisler Matthew A. Escobar Michael S. Foulk Emily C. Furbee Thomas C. Giarla Rivka L. Glaser Anya Goodman Yuying Gosser Adam Haberman Charles R. Hauser Shan Hays Carina E. Howell Jennifer C. Jemc M. Logan Johnson Christopher J. Jones Lisa Kadlec Jacob D. Kagey Kimberly L. Keller Jennifer Kennell S. Catherine Silver Key Adam J. Kleinschmit Melissa Kleinschmit Nighat P. Kokan Olga R. Kopp Meg M. Laakso Judith L. Leatherman Lindsey Long Mollie K. Manier Juan Carlos Martínez‐Cruzado Luis F. Matos Amie J. McClellan Gerard P. McNeil Evan Merkhofer Vida Mingo Hemlata Mistry Elizabeth Mitchell Nathan T. Mortimer Debaditya Mukhopadhyay Jennifer Leigh Myka Alexis Nagengast Paul Overvoorde Don Paetkau Leocadia V. Paliulis Susan Parrish Mary L. Preuss James V. Price Nick Pullen Catherine Reinke Dennis Revie Srebrenka Robic Jennifer Roecklein‐Canfield Michael R. Rubin Takrima Sadikot Jamie Siders Sanford Maria Santisteban Kenneth Saville Stephanie Schroeder C. Shaffer Karim A. Sharif Diane E. Sklensky Chiyedza Small Mary Ann Smith Sheryl T. Smith Rebecca Spokony Aparna Sreenivasan Joyce Stamm Rachel Sterne‐Marr Katherine C. Teeter Justin Thackeray Jeffrey S. Thompson Stephanie Toering Peters Melanie Van Stry Norma Velazquez-Ulloa Cindy Wolfe James Youngblom Brian C. Yowler Leming Zhou Janie Brennan Jeremy Buhler

A hallmark of the research experience is encountering difficulty and working through those challenges to achieve success. This ability essential being a successful scientist, but replicating such in teaching setting can be difficult. The Genomics Education Partnership (GEP) consortium faculty who engage their students genomics Course-Based Undergraduate Research Experience (CURE). Students participate genome annotation, generating gene models using multiple lines experimental evidence. Our...

10.1128/jmbe.v21i1.2005 article EN Journal of Microbiology and Biology Education 2020-01-01

Immune literacy-the ability to hear, learn, read, write, explain, and discuss immunological content with varied audiences-has become critically important in recent years. Yet, its complex terminology discipline-specific concepts, educating individuals about the immune system role health disease may seem daunting. Here, we reflect on how demystify discipline increase accessibility for a broader audience. To address this, working group of immunology educators from diverse institutions...

10.1128/jmbe.00203-22 article EN cc-by-nc-nd Journal of Microbiology and Biology Education 2023-02-01

ABSTRACT Collaboration and communication are important competencies for undergraduate life science education, as noted in the Vision Change Undergraduate Biology Education report. However, initiating collaboration classroom can be an anxiety-inducing experience many students. In contrast to traditional-style icebreakers, we introduce a course content-focused icebreaker activity that served group-forming undertaking on first day of class. We developed four sets handouts (icebreaker tickets),...

10.1128/jmbe.00173-24 article EN cc-by-nc-nd Journal of Microbiology and Biology Education 2025-02-06
David Lopatto Anne Rosenwald Rebecca C. Burgess Catherine Silver Key Melanie Van Stry and 93 more Matthew Wawersik Justin R. DiAngelo Amy T. Hark Matthew P. Skerritt Anna K. Allen Consuelo J. Alvarez Sara Anderson Cindy Arrigo Andrew M. Arsham Daron Barnard James E. J. Bedard Indrani Bose John M. Braverman Martin G. Burg Paula Croonquist Chunguang Du Sondra Dubowsky Heather Eisler Matthew A. Escobar Michael S. Foulk Thomas C. Giarla Rivka L. Glaser Anya Goodman Yuying Gosser Adam Haberman Charles R. Hauser Shan Hays Carina E. Howell Jennifer C. Jemc Christopher J. Jones Lisa Kadlec Jacob D. Kagey Kimberly L. Keller Jennifer Kennell Adam J. Kleinschmit Melissa Kleinschmit Nighat P. Kokan Olga R. Kopp Meg M. Laakso Judith L. Leatherman Lindsey Long Mollie K. Manier Juan Carlos Martínez‐Cruzado Luis F. Matos Amie J. McClellan Gerard P. McNeil Evan Merkhofer Vida Mingo Hemlata Mistry Elizabeth Mitchell Nathan T. Mortimer Jennifer Leigh Myka Alexis Nagengast Paul Overvoorde Don Paetkau Leocadia V. Paliulis Susan Parrish Stephanie Toering Peters Mary L. Preuss James V. Price Nicholas Pullen Catherine Reinke Dennis Revie Srebrenka Robic Jennifer Roecklein‐Canfield Michael R. Rubin Takrima Sadikot Jamie Siders Sanford Maria Santisteban Kenneth Saville Stephanie Schroeder C. Shaffer Karim A. Sharif Diane E. Sklensky Chiyedza Small Sheryl T. Smith Rebecca Spokony Aparna Sreenivasan Joyce Stamm Rachel Sterne‐Marr Katherine C. Teeter Justin Thackeray Jeffrey S. Thompson Norma Velazquez-Ulloa Cindy Wolfe James Youngblom Brian C. Yowler Leming Zhou Janie Brennan Jeremy Buhler Wilson Leung Sarah C. R. Elgin Laura K. Reed

The Genomics Education Partnership (GEP) engages students in a course-based undergraduate research experience (CURE). To better understand the student attributes that support success this CURE, we asked about their attitudes using previously published scales measure epistemic beliefs work and science, interest grit. We found, general, bring with them into classroom contribute to two outcome measures, namely, learning as assessed by pre- postquiz perceived self-reported benefits. While GEP...

10.1128/jmbe.00208-21 article EN cc-by-nc-nd Journal of Microbiology and Biology Education 2022-05-16

Pandemic SARS-CoV-2 has ushered in a renewed interest science along with rapid changes to educational modalities. While technology provides variety of ways convey learning resources, the incorporation alternate modalities can be intimidating for those designing curricula.

10.1128/jmbe.v22i1.2337 article EN cc-by-nc-nd Journal of Microbiology and Biology Education 2021-04-30

Even before coverage and updates on COVID-19 became a daily event in mainstream news, mass media was already full of science-focused current events stories. While relevant to our everyday lives, many popular press science articles overstate conclusions, misstate details or, at worst, purposefully spread disinformation. This iterative news analysis writing intervention designed increase the visibility real-world applications microbiology (including beyond 2019 coronavirus disease [COVID-19]...

10.1128/jmbe.00163-22 article EN cc-by-nc-nd Journal of Microbiology and Biology Education 2023-02-22

Emerging resistance to all classes of antimicrobials is one the defining crises 21st century. Many advances in modern medicine, such as routine surgeries, are predicated on sustaining patients with during a period when their immune systems alone cannot clear infection. The development new has not kept pace antimicrobial (AR) threat. AR bacteria have been documented various environments, drinking and surface water, food, sewage, soil, yet surveillance sampling largely from infected patients....

10.3389/fmicb.2021.577821 article EN cc-by Frontiers in Microbiology 2021-01-22

As powerful computational tools and ‘big data’ transform the biological sciences, bioinformatics training is becoming necessary to prepare next generation of life scientists. Furthermore, because resources employed in are constantly evolving, learning materials must be continuously improved. In addition, these need move beyond today’s typical step-by-step guides promote deeper conceptual understanding by students. One goals Network for Integrating Bioinformatics into Life Sciences Education...

10.1371/journal.pone.0257404 article EN public-domain PLoS ONE 2021-09-10

Over the last several years, nationally disseminated course-based undergraduate research experiences (CUREs) have emerged as an alternative to developing a novel CURE from scratch, but objective assessment of these multi-institution (network) CUREs across institutions is challenging due differences in student populations, instructors, and fidelity implementation. The time, money, skills required develop validate CURE-specific instrument can be prohibitive. Here, we describe co-design process...

10.1128/jmbe.00149-23 article EN cc-by-nc-nd Journal of Microbiology and Biology Education 2024-01-12

Immune literacy garnered significant attention in recent years due to the threat posed by emerging infectious diseases. The pace of immunological discoveries and their relevance society are substantial yet coordinated educational efforts have been rare. This motivated us create a task force educators reflect on pedagogical approaches teaching immunology draft, develop, evaluate key competencies for undergraduate education. research questions addressed include: 1) Which considered important...

10.1371/journal.pone.0313339 article EN cc-by PLoS ONE 2024-11-11

As educators and researchers, we often enjoy enlivening classroom discussions by including examples of cutting-edge high-throughput (HT) technologies that propelled scientific discovery created repositories new information. We also call for the use evidence-based teaching practices to engage students in ways promote equity learning. The complex datasets produced HT approaches can open doors novel genes, drugs, regulatory networks, so need experience with effective design, implementation,...

10.3389/feduc.2021.711512 article EN cc-by Frontiers in Education 2021-08-09
David Lopatto S. Catherine Silver Key Melanie Van Stry Jamie Siders Wilson Leung and 91 more Katie M. Sandlin Chinmay P Rele Laura K. Reed Abby E. Hare-Harris Adam Haberman Adam J. Kleinschmit Alder Yu Alexa Sawa Alexis Nagengast Alisha Howard E Alma Rodríguez Estrada Amy T. Hark Ana Margarida Almeida Andrew M. Arsham Ann K. Corsi Anna K. Allen Anthony D. Aragon Aparna Sreenivasan Brian C. Yowler Carina E. Howell Catherine Reinke Chelsey C. McKenna Christine M. Fleet Christopher J. Jones Cindy Arrigo Cindy Wolfe Claudia Uhde‐Stone Daron Barnard Enrique Rodriguez-Borrero Don Paetkau Evan Merkhofer Eve M. Mellgren M. Chamberlain Geoffrey D. Findlay Gerard P. McNeil Heidi Bretscher Hemayet Ullah Hemlata Mistry H. Howard Xu Indrani Bose Jack E. Vincent Jacob D. Kagey Jacqueline K. Wittke‐Thompson James E. J. Bedard James S. Godde James V. Price Jamie O. Dyer Jennifer Roecklein‐Canfield Jennifer C. Jemc Jennifer Kennell Jeroen Gillard John M. Braverman John Stanga Joyce Stamm Juan Carlos Martínez‐Cruzado Judith L. Leatherman Justin R. DiAngelo Justin Thackeray Karen Schmeichel Katherine C. Teeter Kayla L Bieser Kellie S. Agrimson Kenneth Saville Leocadia V. Paliulis Lindsey Long Lisa Kadlec M. Logan Johnson Maire Kate Sustacek Maria Santisteban Marie Montes-Matias Martin G. Burg Mary Ann Smith Matthew P. Skerritt Matthew Wawersik Melinda A. Yang Michael R. Rubin Michele Eller Monica L. Hall‐Woods Natalie Minkovsky Nicole Salazar Velmeshev Nighat P. Kokan Nikolaos Tsotakos Norma Velazquez-Ulloa Paula Croonquist Rivka L. Glaser Robert A. Drewell Sarah C. R. Elgin Sarah A. Peck Justice Scott Tanner Shallee T. Page Siaumin Fung

The initial phase of the COVID-19 pandemic changed nature course delivery from largely in-person to exclusively remote, thus disrupting well-established pedagogy Genomics Education Partnership (GEP; https://www.thegep.org). However, our web-based research adapted well remote learning environment. As usual, students who engaged in GEP's Course-based Undergraduate Research Experience (CURE) received digital projects based on genetic information within assembled

10.1128/jmbe.00039-23 article EN cc-by-nc-nd Journal of Microbiology and Biology Education 2023-09-22

Introduction Bioinformatics is an interdisciplinary field at the intersection of computational and biological sciences that focuses on analysis interpretation large data sets. Although recognized as essential in life sciences, bioinformatics not commonly integrated undergraduate science education programs. Based a national survey 2016, Network for Integrating into Life Sciences Education (NIBLSE) published community-sourced set core competencies education. The also identified barriers...

10.3389/feduc.2023.1317191 article EN cc-by Frontiers in Education 2023-11-30

Introductory bioinformatics exercises often walk students through the use of computational tools, but provide little understanding what a tool does "under hood." A solid how algorithm functions, including its limitations, is key for interpreting output in biologically relevant context. This introductory exercise integrates an introduction to web-based sequence alignment algorithms with models facilitate student reflection and appreciation tools similarity data. The concludes set...

10.24918/cs.2019.5 article EN CourseSource 2019-01-01

Abstract Immunology education has historically been delivered at the graduate level. Calls for reform in biology and increased workforce demand individuals trained immunology have spurred efforts to examine undergraduate The Undergraduate Education Consortium, a newly formed international group of educators representing diverse institutions, is contributing this effort through development curricular resources student learning outcomes. We identified set fundamental concepts that are critical...

10.4049/jimmunol.206.supp.54.02 article EN The Journal of Immunology 2021-05-01

Abstract The need to focus on immunology education has never been greater. coronavirus disease 2019 pandemic revealed that a significant proportion of our society is vaccine hesitant. Some this hesitancy may stem from general lack understanding how the immune system and immunological interventions work. In addition, social media platforms undercut public health efforts by quickly propagating multitude misconceptions erroneous information surrounding science behind these interventions....

10.4049/immunohorizons.2200004 article EN cc-by-nc-nd ImmunoHorizons 2022-05-01

The purpose of the meeting described in this review was to decide how best ensure sustainability <a href="https://qubeshub.org/community/groups/niblse">Network for Integrating Bioinformatics into Life Science Education</a> (NIBLSE; pronounced &ldquo;nibbles&rdquo;). Biology research today generates large and complex datasets, analysis these datasets is becoming increasingly critical progress field. long-term goal NIBLSE address need achieve full integration bioinformatics undergraduate life...

10.24918/cs.2022.10 article EN CourseSource 2022-01-01

Developing effective assessments of student learning is a challenging task for faculty and even more difficult those in emerging disciplines that lack readily available resources standards. With the power technology-enhanced education accessible digital platforms, instructors are also looking work an online format. This article will be useful all teachers, but especially entry-level instructors, addition to mature who become well versed assessment, seek succinct summary assessment types...

10.1128/jmbe.00205-21 article EN Journal of Microbiology and Biology Education 2021-09-30

There is a growing need for integration of &ldquo;Big Data&rdquo; into undergraduate biology curricula. Transcriptomics one venue to examine from an informatics perspective. RNA sequencing has largely replaced the use microarrays whole genome gene expression studies. Recently, single cell (scRNAseq) unmasked population heterogeneity, offering unprecedented views inner workings individual cells. scRNAseq transforming our understanding development, cellular identity, function, and disease. As...

10.24918/cs.2021.26 article EN CourseSource 2021-01-01

Course-based undergraduate research experiences (CUREs) are a high-impact educational practice that engage students with authentic in the classroom. CURE development models include those designed and implemented at individual institutions to wide-reaching multi-institutional network CUREs. The latter have lowered barriers implementation by providing centralized support system, training curricula, mentoring. learning outcomes span three domains of learning: knowledge, skills, attitude....

10.3389/feduc.2023.1291071 article EN cc-by Frontiers in Education 2023-11-17
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