David J. Stone

ORCID: 0000-0003-4855-4283
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About
Contact & Profiles
Research Areas
  • Alzheimer's disease research and treatments
  • Sepsis Diagnosis and Treatment
  • Machine Learning in Healthcare
  • Parkinson's Disease Mechanisms and Treatments
  • Neurological diseases and metabolism
  • Bioinformatics and Genomic Networks
  • Amyotrophic Lateral Sclerosis Research
  • Artificial Intelligence in Healthcare and Education
  • Groundwater and Isotope Geochemistry
  • Hemodynamic Monitoring and Therapy
  • Neuroinflammation and Neurodegeneration Mechanisms
  • Cardiac, Anesthesia and Surgical Outcomes
  • Electronic Health Records Systems
  • Healthcare Technology and Patient Monitoring
  • Nuclear Receptors and Signaling
  • Mitochondrial Function and Pathology
  • Antimicrobial Peptides and Activities
  • Emergency and Acute Care Studies
  • Airway Management and Intubation Techniques
  • Artificial Intelligence in Healthcare
  • Anesthesia and Sedative Agents
  • Neuroscience and Neuropharmacology Research
  • Intensive Care Unit Cognitive Disorders
  • Groundwater flow and contamination studies
  • Genetic Associations and Epidemiology

New York University
2025

Jacobs (United States)
2023-2024

Cerevel Therapeutics (United States)
2020-2024

Newcastle University
2018-2022

University of Virginia
2012-2021

United States Military Academy
2010-2021

Massachusetts Institute of Technology
2014-2021

National Institutes of Health
1998-2019

University of Toronto
2016-2019

Harvard–MIT Division of Health Sciences and Technology
2017-2019

Aude Nicolas Kevin P. Kenna Alan E. Renton Nicola Ticozzi Faraz Faghri and 95 more Ruth Chia Janice A. Dominov Brendan Kenna Mike A. Nalls Pamela Keagle Alberto Rivera William Camu Natalie A. Murphy Joke J.F.A. van Vugt Joshua T. Geiger Rick A. A. van der Spek Hannah A. Pliner Shankaracharya Bradley Smith David J. Stone Simon Topp Yevgeniya Abramzon Soragia Athina Gkazi John D. Eicher Aoife Kenna Gabriele Mora Aude Nicolas Kevin P. Kenna Nilo Riva Jessica Mandrioli Claudia Caponnetto Stefania Battistini Paolo Volanti Vincenzo La Bella F. L. Conforti Johnathan Cooper‐Knock Sonia Messina Isabella Laura Simone Francesca Trojsi Jeffrey D. Rothstein Lorne Zinman Rick A. A. van der Spek Hannah A. Pliner Margherita Capasso Luigi Ferrucci Cristiane Araújo Martins Moreno Sitharthan Kamalakaran David B. Goldstein Aaron D. Gitler Tim Harris R Myers Hemali Phatnani Rajeeva Musunuri Uday Shankar Evani Avinash Abhyankar Michael C. Zody Julia Kaye Steven Finkbeiner Stacia K. Wyman Alex Lenail Leandro de Araújo Lima Ernest Fraenkel Clive N. Svendsen Leslie M. Thompson Jennifer E. Van Eyk James Berry Jonathan Mill Stephen J. Kolb Merit Cudkowicz Emily G. Baxi Michael Benatar J. Paul Taylor Evadnie Rampersaud Gang Wu Joanne Wuu Giuseppe Lauria Federico Verde Isabella Fogh Cinzia Tiloca Giacomo P. Comi Gianni Sorarù Cristina Cereda Philippe Corcia Hannu Laaksovirta Liisa Myllykangas Lilja Jansson Miko Valori John Ealing Hisham Hamdalla Sara Rollinson Stuart Pickering‐Brown Richard W. Orrell Katie Sidle Andrea Malaspina John Hardy Andrew B. Singleton Janel O. Johnson Sampath Arepalli Peter C. Sapp Merit Cudkowicz

10.1016/j.neuron.2018.02.027 article EN publisher-specific-oa Neuron 2018-03-01

Objective To examine whether a supplemental remote intensive care unit (ICU) program, implemented by an integrated delivery network using commercial telemedicine and information technology system, can improve clinical economic performance across multiple ICUs. Design Before-and-after trial to assess the effect of adding ICU program. Setting Two adult ICUs large tertiary hospital. Patients A total 2,140 patients receiving between 1999 2001. Interventions The program used intensivists...

10.1097/01.ccm.0000104204.61296.41 article EN Critical Care Medicine 2004-01-01

Lack of reproducibility in medical studies is a barrier to the generation robust knowledge base support clinical decision-making. In this paper we outline Medical Information Mart for Intensive Care (MIMIC) Code Repository, centralized code generating reproducible on an openly available critical care dataset.Code provided load data into relational structure, create extractions data, and reproduce entire analysis plans including research studies.Concepts extracted include severity illness...

10.1093/jamia/ocx084 article EN cc-by-nc Journal of the American Medical Informatics Association 2017-07-27
Ruth Chia Marya S. Sabir Sara Bandrés‐Ciga Sara Sáez-Atiénzar Regina H. Reynolds and 95 more Emil K. Gustavsson Ronald L. Walton Sarah Ahmed Coralie Viollet Jinhui Ding Mary B. Makarious Mónica Díez-Fairén Makayla K. Portley Zalak Shah Yevgeniya Abramzon Dena Hernández Cornelis Blauwendraat David J. Stone John D. Eicher Laura Parkkinen Olaf Ansorge Lorraine N. Clark Lawrence S. Honig Karen Marder Afina W. Lemstra Peter St George‐Hyslop Elisabet Londos Kevin Morgan Tammaryn Lashley Thomas T. Warner Zane Jaunmuktane Douglas Galasko Isabel Santana Pentti J. Tienari Liisa Myllykangas Minna Oinas Nigel J. Cairns John C. Morris Glenda M. Halliday Vivianna M. Van Deerlin John Q. Trojanowski Maurizio Grassano Andrea Calvo Gabriele Mora Antonio Canosa Gianluca Floris Ryan C. Bohannan Francesca Brett Ziv Gan‐Or Joshua T. Geiger Anni Moore Patrick May Rejko Krüger David S. Goldstein Grisel Lopez Nahid Tayebi Ellen Sidransky Anthony R. Sotis Gauthaman Sukumar Camille Alba Nathaniel M. Lott Elisa McGrath Martinez Meila Tuck Jatinder Singh Dagmar Bačíková Xijun Zhang Daniel Hupalo Adelani Adeleye Matthew D. Wilkerson Harvey B. Pollard Lucy Norcliffe‐Kaufmann Jose‐Alberto Palma Horacio Kaufmann Vikram G. Shakkottai Matthew Perkins Kathy L. Newell Thomas Gasser Claudia Schulte Francesco Landi Erika Salvi Daniele Cusi Eliezer Masliah Ronald C. Kim Chad A. Caraway Edwin S. Monuki Maura Brunetti Ted M. Dawson Liana S. Rosenthal Marilyn S. Albert Olga Pletnikova Juan C. Troncoso Margaret E. Flanagan Qinwen Mao Eileen H. Bigio Eloy Rodríguez‐Rodríguez Jon Infante Carmen Lage Isabel González Aramburu Pascual Sánchez‐Juan Bernardino Ghetti

10.1038/s41588-021-00785-3 article EN Nature Genetics 2021-02-15

Parkinson disease (PD) is a neurodegenerative disorder pathologically characterized by nigrostriatal dopamine neuron loss and the postmortem presence of Lewy bodies, depositions insoluble α-synuclein, other proteins that likely contribute to cellular toxicity death during disease. Genetic biochemical studies have implicated impaired lysosomal mitochondrial function in pathogenesis PD. Transmembrane protein 175 (TMEM175), K+ channel, centered under major genome-wide association peak for PD,...

10.1073/pnas.1616332114 article EN Proceedings of the National Academy of Sciences 2017-02-13

<h3>Background</h3> Expression of messenger RNA (mRNA) for the γ-aminobutyric acid(GABA)–synthesizing enzyme, glutamic acid decarboxylase (GAD), in prefrontal cortex and number GABAergic neurons hippocampus are reduced schizophrenia bipolar disorder. We tested hypothesis that expression 2 isoforms, one 65 kd (GAD<sub>65</sub>) other67 (GAD<sub>67</sub>), is differentially affected <h3>Methods</h3> Hippocampal sections from 15 subjects 3 groups (control with disorder) were studied using an...

10.1001/archpsyc.59.6.521 article EN Archives of General Psychiatry 2002-06-01

Estrogen replacement therapy appears to delay the onset of Alzheimer’s disease (AD), but mechanisms for this action are incompletely known. We show how enhancement synaptic sprouting by estradiol (E 2 ) in response an entorhinal cortex (EC) lesion model AD may operate via apolipoprotein E (apoE)-dependent mechanism. In wild-type (WT) mice, ovariectomy decreased commissural/associational inner molecular layer dentate gyrus, with synaptophysin (SYN) as a marker. returned SYN levels...

10.1523/jneurosci.18-09-03180.1998 article EN cc-by-nc-sa Journal of Neuroscience 1998-05-01

Abstract Using expression profiles from postmortem prefrontal cortex samples of 624 dementia patients and non‐demented controls, we investigated global disruptions in the co‐regulation genes two neurodegenerative diseases, late‐onset Alzheimer's disease ( AD ) Huntington's HD ). We identified networks differentially co‐expressed DC gene pairs that either gained or lost correlation cases relative to control group, with former dominant for both patterns replicating independent human cohorts...

10.15252/msb.20145304 article EN cc-by Molecular Systems Biology 2014-07-01

Synaptic degeneration, including impairment of synaptic plasticity and loss synapses, is an important feature Alzheimer disease pathogenesis. Increasing evidence suggests that these degenerative changes are associated with accumulation soluble oligomeric assemblies amyloid beta (Abeta) known as ADDLs. In primary hippocampal cultures ADDLs bind to a subpopulation neurons. However the molecular basis this cell type-selective interaction not understood. Here, using siRNA screening technology,...

10.1074/jbc.m109.057182 article EN cc-by Journal of Biological Chemistry 2009-12-24

Objectives: To evaluate the relative validity of criteria for identification sepsis in an ICU database. Design: Retrospective cohort study adult admissions from 2008 to 2012. Setting: Tertiary teaching hospital Boston, MA. Patients: Initial admission all patients noncardiac surgical ICUs. Interventions: Comparison five different algorithms retrospectively identifying sepsis, including Sepsis-3 criteria. Measurements and Main Results: 11,791 23,620 (49.9%) met study. Within this subgroup,...

10.1097/ccm.0000000000002965 article EN Critical Care Medicine 2018-01-05

In Alzheimer's disease, there are striking changes in CSF composition that relate to altered choroid plexus (CP) function. Studying CP tissue gene expression at the blood-cerebrospinal fluid barrier could provide further insight into epithelial and stromal responses neurodegenerative disease states.Transcriptome-wide Affymetrix microarrays were used determine disease-related human CP. RNA from post-mortem samples of entire lateral ventricular was extracted 6 healthy controls (Ctrl), 7...

10.1186/s12987-018-0102-9 article EN cc-by Fluids and Barriers of the CNS 2018-05-30

BackgroundDespite wide use of severity scoring systems for case-mix determination and benchmarking in the intensive care unit (ICU), possibility bias across ethnicities has not been examined. Guidelines on illness scores to inform triage decisions allocation scarce resources, such as mechanical ventilation, during current COVID-19 pandemic warrant examination possible these models. We investigated performance Acute Physiology Chronic Health Evaluation IVa (APACHE IVa), Oxford Severity...

10.1016/s2589-7500(21)00022-4 article EN cc-by-nc-nd The Lancet Digital Health 2021-03-23

The pathogenesis and clinical heterogeneity of Parkinson's disease (PD) have been evaluated from molecular, pathophysiological, perspectives. High-throughput proteomic analysis cerebrospinal fluid (CSF) opened new opportunities for scrutinizing this heterogeneity. To date, is the most comprehensive CSF-based proteomics profiling study in PD with 569 patients (350 idiopathic patients, 65 GBA + mutation carriers 154 LRRK2 carriers), 534 controls, 4135 proteins analyzed. Combining CSF...

10.1038/s41531-023-00461-9 article EN cc-by npj Parkinson s Disease 2023-02-11
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