John J. Sakon

ORCID: 0000-0001-8170-6213
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About
Contact & Profiles
Research Areas
  • Memory and Neural Mechanisms
  • Neural dynamics and brain function
  • Neuroscience and Neuropharmacology Research
  • Memory Processes and Influences
  • Lipid Membrane Structure and Behavior
  • Advanced Fluorescence Microscopy Techniques
  • Cellular transport and secretion
  • Forecasting Techniques and Applications
  • Functional Brain Connectivity Studies
  • Child and Animal Learning Development
  • Retinal Development and Disorders
  • Sleep and Wakefulness Research
  • Bacterial Genetics and Biotechnology
  • Protein Structure and Dynamics
  • Diamond and Carbon-based Materials Research
  • Glycosylation and Glycoproteins Research
  • Ion-surface interactions and analysis
  • Advanced biosensing and bioanalysis techniques
  • Bacteriophages and microbial interactions
  • Epigenetics and DNA Methylation
  • Advanced Biosensing Techniques and Applications
  • Nanopore and Nanochannel Transport Studies
  • Opportunistic and Delay-Tolerant Networks
  • Force Microscopy Techniques and Applications

University of Pennsylvania
2021-2024

New York University
2014-2022

North Carolina State University
2008-2020

Daniël Lakens Federico Adolfi Casper J. Albers Farid Anvari Matthew A J Apps and 83 more Shlomo Argamon Thom Baguley Raymond Becker Stephen D. Benning Daniel E. Bradford Erin Michelle Buchanan Aaron R. Caldwell Ben Van Calster Rickard Carlsson Sau-Chin Chen Bryan Chung Lincoln Colling Gary S. Collins Zander Crook Emily S. Cross Sameera Daniels Henrik Danielsson Lisa M. DeBruine Daniel J. Dunleavy Brian D. Earp Michele I. Feist Jason D. Ferrell James G. Field Nicholas W. Fox Amanda Friesen Caio Gomes Mónica González-Márquez James A. Grange Andrew P. Grieve Robert Guggenberger James T. Grist Anne‐Laura van Harmelen Fred Hasselman Kevin D. Hochard Mark R. Hoffarth Nicholas P. Holmes Michael Ingre Peder Mortvedt Isager Hanna K. Isotalus Christer Johansson Konrad Juszczyk David A. Kenny Ahmed A. Khalil Barbara Konat Junpeng Lao Erik Gahner Larsen Gerine M. A. Lodder Jiří Lukavský Christopher R. Madan David Manheim Stephen R. Martin Andrea E. Martin Deborah G. Mayo Randy J. McCarthy Kevin McConway Colin McFarland Amanda Q. X. Nio Gustav Nilsonne Cilene Lino de Oliveira Jean‐Jacques Orban de Xivry Sam Parsons Gerit Pfuhl Kimberly A. Quinn John J. Sakon S. Adil Sarıbay Iris K. Schneider Manojkumar Selvaraju Zsuzsika Sjoerds Samuel G. Smith Tim Smits Jeffrey R. Spies Vishnu Sreekumar Crystal N. Steltenpohl Neil Stenhouse Wojciech Świątkowski Miguel A. Vadillo Marcel A. L. M. van Assen Matt N Williams Samantha E. Williams Donald R. Williams Tal Yarkoni Ignazio Ziano Rolf A. Zwaan

10.1038/s41562-018-0311-x article EN Nature Human Behaviour 2018-02-26

Direct human brain recordings have confirmed the presence of high-frequency oscillatory events, termed ripples, during awake behavior. While many prior studies focused on medial temporal lobe (MTL) ripples memory retrieval, here we investigate encoding. Specifically, ask whether encoding predict and how memories are subsequently recalled. Detecting from MTL electrodes implanted in 116 neurosurgical participants (

10.1523/jneurosci.0111-23.2023 article EN cc-by-nc-sa Journal of Neuroscience 2024-01-17

High-frequency oscillatory events, termed ripples, represent synchrony of neural activity in the brain. Recent evidence suggests that medial temporal lobe (MTL) ripples support memory retrieval. However, it is unclear if signal reinstatement episodic memories. Analyzing electrophysiological MTL recordings from 245 neurosurgical participants performing recall tasks, we find rate hippocampal rises just prior to free recently formed This prerecall ripple effect (PRE) stronger CA1 and...

10.1073/pnas.2201657119 article EN cc-by-nc-nd Proceedings of the National Academy of Sciences 2022-09-26

We report the profiling of 5-methyl cytosine distribution within single genomic-sized DNA molecules at a gene-relevant resolution. This method linearizes and stretches by confinement to channels with dimension about 250×200nm2. The methylation state is detected using fluorescently labeled methyl-CpG binding domain proteins (MBD), high signal contrast low background. barcodes consisting methylated non-methylated segments are generated, both short long concatemers demonstrating spatially...

10.1063/1.3613671 article EN Biomicrofluidics 2011-07-25

We examined timing-related signals in primate hippocampal cells as animals performed an object-place (OP) associative learning task. found with firing rates that incrementally increased or decreased across the memory delay interval of task, which we refer to incremental timing (ITCs). Three distinct categories ITCs were identified. Agnostic did not distinguish between different trial types. The remaining two signaled time and context together: One category tracked depending on behavioral...

10.1073/pnas.1417827111 article EN Proceedings of the National Academy of Sciences 2014-12-08

The CA3 and dentate gyrus (DG) regions of the hippocampus are considered key for disambiguating sensory inputs from similar experiences in memory, a process termed pattern separation. neural mechanisms underlying separation, however, have been difficult to compare across species: rodents offer robust recording methods with less human-centric tasks, while humans provide complex behavior potential. To overcome these limitations, we trained monkeys perform visual separation task those used...

10.1073/pnas.1900804116 article EN Proceedings of the National Academy of Sciences 2019-04-22

Biological membranes have distinct geometries that confer specific functions. However, the molecular mechanisms underlying phenomenological geometry/function correlations remain elusive. We studied effect of membrane geometry on localization membrane-bound proteins. Quantitative comparative experiments between two most abundant cellular geometries, spherical and cylindrical, revealed regulates spatial segregation The measured geometry-driven reached 50-fold for same mean curvature,...

10.1021/acscentsci.0c00419 article EN publisher-specific-oa ACS Central Science 2020-06-23
Daniël Lakens Federico Adolfi Casper J. Albers Farid Anvari Matthew A J Apps and 82 more Shlomo Argamon Marcel A. L. M. van Assen Thom Baguley Raymond Becker Stephen D. Benning Daniel E. Bradford Erin Michelle Buchanan Aaron R. Caldwell Ben Van Calster Rickard Carlsson Sau-Chin Chen Bryan Chung Lincoln Colling Gary S. Collins Zander Crook Emily S. Cross Sameera Daniels Henrik Danielsson Lisa M. DeBruine Daniel J. Dunleavy Brian D. Earp michele feist Jason D. Ferrell James G. Field Nicholas William Fox Amanda Friesen Caio Gomes James A. Grange Andrew P. Grieve Robert Guggenberger Anne‐Laura van Harmelen Fred Hasselman Kevin D. Hochard Mark R. Hoffarth Nicholas P. Holmes Michael Ingre Peder Mortvedt Isager Hanna K. Isotalus Christer Johansson Konrad Juszczyk David A. Kenny Ahmed A. Khalil Barbara Konat Junpeng Lao Erik Gahner Larsen Gerine M. A. Lodder Jiří Lukavský Christopher R. Madan David Manheim Mónica González-Márquez Stephen R. Martin Andrea E. Martin Deborah G. Mayo Randy J. McCarthy Kevin James McConway Colin McFarland Gustav Nilsonne Amanda Q. X. Nio Cilene Lino de Oliveira Sam Parsons Gerit Pfuhl Kimberly A. Quinn John J. Sakon S. Adil Sarıbay Iris K. Schneider Manojkumar Selvaraju Zsuzsika Sjoerds Samuel Smith Tim Smits Jeffrey R. Spies Vishnu Sreekumar Crystal N. Steltenpohl Neil Stenhouse Wojciech Świątkowski Miguel A. Vadillo Matt N Williams Samantha E. Williams Donald R. Williams Jean‐Jacques Orban de Xivry Tal Yarkoni Ignazio Ziano Rolf Antonius Zwaan

In response to recommendations redefine statistical significance p ≤ .005, we propose that researchers should transparently report and justify all choices they make when designing a study, including the alpha level.

10.31234/osf.io/9s3y6 preprint EN 2017-09-18

High-frequency oscillatory events, termed ripples, represent synchrony of neural activity in the brain. Recent evidence suggests medial temporal lobe (MTL) ripples support memory retrieval. However, it is unclear if signal reinstatement episodic memories. Analyzing electrophysiological MTL recordings from 219 neurosurgical participants performing recall tasks, we find that rate hippocampal rises just prior to free recently-formed This pre-recall ripple effect (PRE) stronger CA1 and dentate...

10.1101/2021.06.07.447409 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2021-06-07

Abstract The role of the hippocampus in recognition memory has long been a source debate. Tasks used to study that typically require an explicit probe, where participant must make response prove they remember, yield mixed results on hippocampal involvement. Here, we tasked monkeys freely view naturalistic videos, and only tested their via looking times for two separate novel versus repeat video conditions each trial. Notably, large proportion (>30%) neurons differentiated these videos...

10.1002/hipo.23335 article EN Hippocampus 2021-05-22

Abstract The CA3 and dentate gyrus (DG) regions of the hippocampus are considered key for disambiguating sensory inputs from similar experiences in memory, a process termed pattern separation. neural mechanisms underlying separation, however, have been difficult to compare across species: rodents offer robust recording methods with less human-centric tasks while humans provide complex behavior potential. To overcome these limitations, we trained monkeys perform visual separation task those...

10.1101/302505 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2018-04-17

Abstract The role of the hippocampus in recognition memory has long been a source debate. Tasks used to study that typically require an explicit probe, where participant must make response prove they remember, yield mixed results on hippocampal involvement. Here, we tasked monkeys freely view naturalistic videos, and only tested their via looking times for two separate novel v. repeat video conditions each trial. Notably, large proportion neurons differentiated these videos changes firing...

10.1101/2020.01.03.894394 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2020-01-03

An integral feature of human memory is the ability to recall past events. What distinguishes such episodic from semantic or associative joint encoding and retrieval "what," "where," "when" (WWW) for Surprisingly, little work has addressed whether all three components WWW are retrieved with equal fidelity when remembering episodes. To study this question, we created a novel task where participants identified matched mismatched still images sampled recently viewed synthetic movies. The...

10.1152/jn.00250.2021 article EN Journal of Neurophysiology 2022-07-06

Abstract Recent human electrophysiology work has uncovered the presence of high frequency oscillatory events, termed ripples, during awake behavior. This prior focuses on ripples in medial temporal lobe (MTL) memory retrieval. Few studies, however, investigate item encoding. Many studies have found neural activity encoding that predicts later recall, subsequent effects (SMEs), but it is unclear if also predict recall. Detecting 116 neurosurgical participants (n = 61 male) performing an...

10.1101/2022.10.03.510672 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2022-10-07
Daniël Lakens Federico Adolfi Casper J. Albers Farid Anvari Matthew A J Apps and 82 more Shlomo Argamon Marcel A. L. M. van Assen Thom Baguley Raymond Becker Stephen D. Benning Daniel E. Bradford Erin Michelle Buchanan Aaron R. Caldwell Ben Van Calster Rickard Carlsson Sau-Chin Chen Bryan Chung Lincoln Colling Gary S. Collins Zander Crook Emily S. Cross Sameera Daniels Henrik Danielsson Lisa M. DeBruine Daniel J. Dunleavy Brian D. Earp michele feist Jason D. Ferrell James G. Field Nicholas William Fox Amanda Friesen Caio Gomes J D Grange Andrew P. Grieve Robert Guggenberger Anne‐Laura van Harmelen Fred Hasselman Kevin D. Hochard Mark R. Hoffarth Nicholas P. Holmes Michael Ingre Peder Mortvedt Isager Hanna K. Isotalus Christer Johansson Konrad Juszczyk David A. Kenny Ahmed A. Khalil Barbara Konat Junpeng Lao Erik Gahner Larsen Gerine M. A. Lodder Jiří Lukavský Christopher R. Madan David Manheim Mónica González-Márquez Stephen R. Martin Andrea E. Martin Deborah G. Mayo Randy J. McCarthy Kevin James McConway Colin McFarland Gustav Nilsonne Amanda Q. X. Nio Cilene Lino de Oliveira Sam Parsons Gerit Pfuhl Kimberly A. Quinn John J. Sakon S. Adil Sarıbay Iris K. Schneider Manojkumar Selvaraju Zsuzsika Sjoerds Samuel Smith Tim Smits Jeffrey R. Spies Vishnu Sreekumar Crystal N. Steltenpohl Neil Stenhouse Wojciech Świątkowski Miguel A. Vadillo Matt N Williams Samantha E. Williams Donald R. Williams Jean‐Jacques Orban de Xivry Tal Yarkoni Ignazio Ziano Rolf Antonius Zwaan

In response to recommendations redefine statistical significance p ≤ .005, we propose that researchers should transparently report and justify all choices they make when designing a study, including the alpha level.

10.31234/osf.io/9s3y6_v1 preprint EN 2017-09-18

An integral feature of human memory is the ability to recall past events. What distinguishes such episodic from associative and semantic memories joint encoding retrieval “what,” “where,” “when” (WWW) Here, we investigated whether WWW components episodes are retrieved with equal fidelity. Using a novel task where participants were probed on recently-viewed synthetic movie, found fundamental differences in mnemonic accuracy between these components. The had lowest was most severely influenced...

10.1101/2020.01.09.901033 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2020-01-10
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