Yuxin Shi

ORCID: 0000-0001-8466-5920
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About
Contact & Profiles
Research Areas
  • Genetic Mapping and Diversity in Plants and Animals
  • Rice Cultivation and Yield Improvement
  • Genetics and Plant Breeding
  • Genomics and Phylogenetic Studies
  • Plant Micronutrient Interactions and Effects
  • Adipokines, Inflammation, and Metabolic Diseases
  • Advanced Machining and Optimization Techniques
  • Privacy-Preserving Technologies in Data
  • Political Economy and Marxism
  • Global trade, sustainability, and social impact
  • Privacy, Security, and Data Protection
  • Advanced machining processes and optimization
  • Plant Disease Resistance and Genetics
  • Genetic and phenotypic traits in livestock
  • Pancreatic and Hepatic Oncology Research
  • GABA and Rice Research
  • Advanced Surface Polishing Techniques
  • Plant responses to water stress
  • Epigenetics and DNA Methylation
  • Gene expression and cancer classification
  • Plant and Fungal Species Descriptions
  • Mobile Crowdsensing and Crowdsourcing
  • Insect and Arachnid Ecology and Behavior
  • Cancer Genomics and Diagnostics
  • Japanese History and Culture

Cornell University
2016-2024

Nanyang Technological University
2023

Alibaba Group (China)
2023

Shanghai Ocean University
2021

Abstract Increasing food production is essential to meet the demands of a growing human population, with its rising income levels and nutritional expectations. To address demand, plant breeders seek new sources genetic variation enhance productivity, sustainability resilience crop varieties. Here we launch high-resolution, open-access research platform facilitate genome-wide association mapping in rice, staple crop. The provides an immortal collection diverse germplasm, high-density...

10.1038/ncomms10532 article EN cc-by Nature Communications 2016-02-04

Recent advances in federated learning (FL) have brought large-scale collaborative machine opportunities for massively distributed clients with performance and data privacy guarantees. However, most current works focus on the interest of central controller FL overlook interests clients. This may result unfair treatment clients, which discourages them from actively participating process damages sustainability ecosystem. Therefore, topic ensuring fairness is attracting a great deal research...

10.1109/tnnls.2023.3263594 article EN IEEE Transactions on Neural Networks and Learning Systems 2023-04-10

Single nucleotide polymorphisms (SNPs) are highly abundant, amendable to high-throughput genotyping, and useful for a number of breeding genetics applications in crops. SNP frequencies vary depending on the species populations under study, therefore target SNPs need be carefully selected informative each application. While multiple genotyping systems available rice (Oryza sativa L. its relatives), they their informativeness, cost, marker density, speed, flexibility, data quality. In this we...

10.1371/journal.pone.0232479 article EN cc-by PLoS ONE 2020-05-14

Abstract As sequencing and genotyping technologies evolve, crop genetics researchers accumulate increasing numbers of genomic data sets from various platforms on different germplasm panels. Imputation is an effective approach to increase marker density existing toward the goal integrating resources for downstream applications. While a number imputation software packages are available, limitations utilization rice community include high computational demand lack reference panel. To address...

10.1038/s41467-018-05538-1 article EN cc-by Nature Communications 2018-08-23

Understanding the genetics of field-based tolerance to high iron-associated (HIA) stress in rice can accelerate development new varieties with enhanced yield performance West African lowland ecosystems. To date, few studies have been undertaken rigorously evaluate under HIA conditions. In this study, two NERICA × O. sativa bi-parental populations and one O.sativa diversity panel consisting 296 accessions were evaluated for grain leaf bronzing symptoms over multiple years four control sites....

10.3389/fpls.2020.604938 article EN cc-by Frontiers in Plant Science 2021-01-15

Association analysis for ionomic concentrations of 20 elements identified independent genetic factors underlying the root and shoot ionomes rice, providing a platform selecting dissecting causal variants. Understanding basis mineral nutrient acquisition is key to fully describing how terrestrial organisms interact with non-living environment. Rice (Oryza sativa L.) serves both as model organism studies an important component global food system. Studies in rice ionomics have primarily focused...

10.1007/s00122-021-03848-5 article EN cc-by Theoretical and Applied Genetics 2021-05-20

Crop wild relatives represent valuable reservoirs of variation for breeding, but their populations are threatened in natural habitats, sparsely represented genebanks, and most poorly characterized. The focus this study is the Oryza rufipogon species complex (ORSC), progenitor Asian rice (Oryza sativa L.). ORSC comprises perennial, annual intermediate forms which were historically designated as O. rufipogon, nivara, f. spontanea (or spp., an form mixed rufipogon/O. nivara ancestry),...

10.3389/fpls.2022.787703 article EN cc-by Frontiers in Plant Science 2022-06-13

Quantitative traits are important targets of both natural and artificial selection. The genetic architecture these its change during the adaptive process is thus fundamental interest. fate additive effects variants underlying a trait receives particular attention because they constitute variation component that transferred from parents to offspring governs response While estimation this phenotypic challenging, increasing availability dense molecular markers puts it within reach. Inbred plant...

10.1534/g3.120.401194 article EN cc-by G3 Genes Genomes Genetics 2020-05-22

Rice, Oryza sativa L., is a cultivated, inbreeding species that serves as the staple food for largest number of people on earth. It has two strongly diverged varietal groups, Indica and Japonica , which result from combination natural human selection. The genetic divergence these groups reflects underlying population structure their wild ancestors, suggests pre-breeding strategy designed to take advantage existing genetic, geographic ecological substructure may provide rational approach...

10.3389/fpls.2020.564824 article EN cc-by Frontiers in Plant Science 2020-11-12

Background: Monocytes have been implicated in the initiation and progression of cardiovascular (CV) complications type 2 diabetes (T2D). Aim: We investigated diabetes-induced methylation changes enriched pathways circulating monocytes T2D patients. compared vs. non-T2D participants analyzed patients according to control. Further, we assessed a subset with poor control high CV risk following 6-month treatment intensification. Methods: recruited consecutively 200 participants, 160 40...

10.1161/circ.150.suppl_1.4141496 article EN Circulation 2024-11-11

Abstract Quantitative traits are important targets of both natural and artificial selection. The genetic architecture these its change during the adaptive process is thus fundamental interest. fate additive effects variants underlying a trait receives particular attention because they constitute variation component that transferred from parents to offspring governs response While estimation this phenotypic challenging, increasing availability dense molecular markers puts it within reach....

10.1101/637330 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2019-05-14

Vallisneria  belongs to Hydrocharitaceae, which is a pioneer species of ecological restoration in waters. In order carry out more comprehensive SSR analysis , we used the restriction-site associated DNA sequencing (RAD-seq) technology analyze Simple Sequence Repeats (SSR) information of  markers and primer Vallisneria  were developed based on RAD-seq data.Among which ,366 simple sequence repeats loci detected. Primers 355 designed successfully, two base repeat...

10.5376/mpb.2021.12.0030 article EN cc-by Molecular Plant Breeding 2021-01-01
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