Donat Agosti

ORCID: 0000-0001-9286-1200
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Research Areas
  • Species Distribution and Climate Change
  • Insect and Arachnid Ecology and Behavior
  • Plant and animal studies
  • Research Data Management Practices
  • Biomedical Text Mining and Ontologies
  • Environmental DNA in Biodiversity Studies
  • Fossil Insects in Amber
  • Scientific Computing and Data Management
  • Semantic Web and Ontologies
  • Invertebrate Taxonomy and Ecology
  • Forest Ecology and Biodiversity Studies
  • Animal and Plant Science Education
  • Ecology and Vegetation Dynamics Studies
  • Genomics and Phylogenetic Studies
  • Zoonotic diseases and public health
  • Bat Biology and Ecology Studies
  • Botanical Studies and Applications
  • Insect and Pesticide Research
  • Socioeconomics of Resources and Conservation
  • Coleoptera Taxonomy and Distribution
  • Mycorrhizal Fungi and Plant Interactions
  • Neurobiology and Insect Physiology Research
  • Animal Behavior and Reproduction
  • Botany and Plant Ecology Studies
  • Environmental and Biological Research in Conflict Zones

Pensoft Publishers (Bulgaria)
2010-2024

Bulgarian Academy of Sciences
2010-2024

Meise Botanic Garden
2017-2024

SIB Swiss Institute of Bioinformatics
2022-2024

HES-SO Genève
2023-2024

Royal Museum for Central Africa
2017-2024

Muséum national d'Histoire naturelle
2022-2024

European Organization for Nuclear Research
2019-2024

Ecosystem (Spain)
2024

Institute of Biodiversity and Ecosystem Research
2020-2023

Abstract Although many taxa show a latitudinal gradient in richness, the relationship between latitude and species richness is often asymmetrical northern southern hemispheres. Here we examine pattern of across 1003 local ant assemblages. We find asymmetry, with hemisphere sites being more diverse than sites. Most this asymmetry could be explained statistically by differences contemporary climate. Local was positively associated temperature, but negatively (although weakly) temperature range...

10.1111/j.1461-0248.2009.01291.x article EN Ecology Letters 2009-03-10

A worker ant preserved with microscopic detail has been discovered in Turonian-aged New Jersey amber [ ca. 92 mega-annum (Ma)]. The apex of the gaster an acidopore and, thus, allows definitive assignment fossil to large extant subfamily Formicinae, members which use a defensive spray formic acid. This specimen is only Cretaceous record subfamily, and two other ants are known from that unequivocally belong ( Brownimecia Canapone Ponerinae, Canadian amber, respectively). In lieu cladogram...

10.1073/pnas.240452097 article EN Proceedings of the National Academy of Sciences 2000-11-14

Much biodiversity data is collected worldwide, but it remains challenging to assemble the scattered knowledge forassessing status and trends. The concept of Essential Biodiversity Variables (EBVs) was introduced tostructure monitoring globally, harmonize standardize from disparate sourcesto capture a minimum set critical variables required study, report manage change. Here, weassess challenges ‘Big Data’ approach building global EBV products across taxa spatiotemporalscales, focusing on...

10.1111/brv.12359/epdf article EN reponame: Repositorio Institucional de Documentación Científica Humboldt 2017-01-01

10.5281/zenodo.1168586 article Zenodo (CERN European Organization for Nuclear Research) 2011-05-31
Luis M. P. Ceríaco Eliécer E. Gutiérrez Alain Dubois Cristian Simón Abdala Abdulaziz S. Alqarni and 95 more Kraig Adler Edson A. Adriano Erna Aescht Ishan Agarwal Sabine Agatha Donat Agosti Antônio J. C. Aguiar Jonas José Mendes Aguiar Dirk Ahrens Alexandre Luis Padovan Aleixo Maria Judite Alves Fábio Raposo do Amaral Natalia B. Ananjeva Marcelo C. Andrade Marco B D Andrade Franco Andreone Pedro P. U. de Aquino Paula Beatriz Araujo Henrard Arnaud Jairo Arroyave Wolfgang Arthofer Tom Artois Diego Astúa Celso O. Azevedo Justin C. Bagley Diego Baldo Helen M. Barber‐James Eva V. Bärmann Cristiane Bastos‐Silveira Michael F. Bates Aaron M. Bauer Ismael Franz Ricardo C. Benine Daniel J. Bennett Bastian Bentlage Björn Berning Daizy Bharti Cibele Biondo José Luís Olivan Birindelli Theo Blick Giovanni Boano Flávio A. Bockmann Wiesław Bogdanowicz Wolfgang Böhme Enrico Borgo Leo J. Borkin M. C. P Ricardo Roger Bour William R. Branch Cínthia A. Brasileiro Janet K. Braun Gustavo A. Bravo Luc Brendonck Guilherme Renzo Rocha Brito Marcelo R. Britto Paulo Andreas Buckup Daniel Burckhardt Ulrich Burkhardt Stephen D. Busack Luiz Alexandre Campos Alain Canard Eliana M. Cancello Ulisses Caramaschi James M. Carpenter Martin Carr Renan Carrenho Alexandra Cartaxana Máriom A. Carvajal Gervásio Silva Carvalho Marcelo R. de Carvalho Amira Chaabane Cínthia Chagas Prosanta Chakrabarty Kailas Chandra Stylianos Chatzimanolis Indraneil Das Alexandre Uarth Christoff Fabio Cianferoni Santiago Claramunt Dan Cogălniceanu Bruce B. Collette Guarino Rinaldi Colli Timothy J. Colston Werner Conradie Jérôme Constant Reginaldo Constantino Joseph A. Cook Danilo Pacheco Cordeiro Alexandra Marçal Correia F.P.D. Cotterill Brandi S. Coyner Mário Alberto Cozzuol Joël Cracraft Angelica Crottini Giulio Cuccodoro

The question whether taxonomic descriptions naming new animal species without type specimen(s) deposited in collections should be accepted for publication by scientific journals and allowed the Code has already been discussed Zootaxa (Dubois & Nemésio 2007; Donegan 2008, 2009; 2009a-b; Dubois Gentile Snell Minelli Cianferoni Bartolozzi 2016; Amorim et al. 2016). This was again raised a letter supported 35 signatories published journal Nature (Pape 2016) on 15 September 2016. On 25 2016,...

10.11646/zootaxa.4196.3.9 article EN Zootaxa 2016-11-23

Essential Biodiversity Variables (EBV) are fundamental variables that can be used for assessing biodiversity change over time, determining adherence to policy, monitoring progress towards sustainable development goals, and tracking responses disturbances management interventions. Data from observations or models provide measured estimated EBV values, which we refer as data products, help capture the above processes trends serve a coherent framework documenting in biodiversity. Using primary...

10.1016/j.ecoinf.2018.11.003 article EN cc-by Ecological Informatics 2018-11-17

Abstract: The Atlantic rainforest of southern Bahia is one the last remnants lowland forest eastern Brazil that once covered entire coastal area from Rio Grande do Norte to Sul ( lat 8°–28° S) and has been deforested a small fraction its original cover (1–12%). All recent vegetation surveys have based on optical satellite data, which hampered by cloud Bahia's intricate mix patches with other tree crops, especially cocoa. We describe application radar remote‐sensing data distinguish cocoa...

10.1046/j.1523-1739.2001.015004867.x article EN Conservation Biology 2001-08-03

The concept of semantic tagging and its potential for enhancements to taxonomic papers is outlined illustrated by four exemplar published in the present issue ZooKeys. were created different ways: (i) written Microsoft Word submitted as non-tagged manuscript (doi: 10.3897/zookeys.50.504); (ii) generated from Scratchpads XML-tagged manuscripts 10.3897/zookeys.50.505 doi: 10.3897/zookeys.50.506); (iii) an author's database(doi: 10.3897/zookeys.50.485) manuscript. XML implemented during...

10.3897/zookeys.50.538 article EN cc-by ZooKeys 2010-06-30

A large part of our knowledge on the world's species is recorded in corpus biodiversity literature with well over hundred million pages, and represented natural history collections estimated at 2 – 3 billion specimens. But this body almost entirely paper-print form not directly accessible through Internet. For digitization literature, new territories have to be chartered fields technical, legal social issues that presently impede its advance. The taxonomic seems especially destined for such...

10.1186/1756-0500-2-53 article EN cc-by BMC Research Notes 2009-01-01

The Creative Commons (CC) licenses are a suite of copyright-based defining terms for the distribution and re-use creative works. CC provides different use cases includes open content such as Attribution license (CC BY, used by many Open Access scientific publishers) Share Alike BY-SA, Wikipedia, example). However, also contains non-free non-open like those containing "non-commercial" (NC) condition. Although people identify with "non-profit", detailed analysis reveals that significant...

10.3897/zookeys.150.2189 article EN cc-by ZooKeys 2011-11-28

Hymenoptera exhibit an incredible diversity of phenotypes, the result ~240 million years evolution and primary subject more than 250 research. Here we describe history, development, utility Anatomy Ontology (HAO) its associated applications. These resources are designed to facilitate accessible extensible research on hymenopteran phenotypes. Outreach with hymenopterist community is utmost importance HAO project, this paper a direct response questions that arised from project workshops. In...

10.3897/jhr.27.2961 article EN cc-by Journal of Hymenoptera Research 2012-05-31

Biodiversity data is being digitized and made available online at a rapidly increasing rate but current practices typically do not preserve linkages between these data, which impedes interoperation, provenance tracking, assembly of larger datasets. For associated with biocollections, the biodiversity community has long recognized that an essential part establishing preserving to apply globally unique identifiers point when are generated in field persist downstream, this seldom implemented...

10.3897/zookeys.494.9352 article EN cc-by ZooKeys 2015-04-06

The biodiversity domain, and in particular biological taxonomy, is moving the direction of semantization its research outputs. present work introduces OpenBiodiv-O, ontology that serves as basis OpenBiodiv Knowledge Management System. Our intent to provide an fills gaps between ontologies for resources, such DarwinCore-based ontologies, semantic publishing SPAR Ontologies. We bridge this gap by providing focusing on taxonomy. OpenBiodiv-O classes, properties, axioms domains scholarly...

10.1186/s13326-017-0174-5 article EN cc-by Journal of Biomedical Semantics 2018-01-18

BiCIKL is an European Union Horizon 2020 project that will initiate and build a new starting community of key research infrastructures, establishing open science practices in the domain biodiversity through provision access to data, associated tools services at each separate stage along entire cycle. provide methods workflows for integrated harvesting, liberating, linking, accessing re-using subarticle-level data (specimens, material citations, samples, sequences, taxonomic names,...

10.3897/rio.8.e81136 article EN cc-by Research Ideas and Outcomes 2022-01-26

The fields of taxonomy and biodiversity research have witnessed an exponential growth in published literature. This vast corpus articles holds information on the diverse biological traits organisms their ecologies. However, access to extraction relevant data from this extensive resource remain challenging. Advances text mining (TDM) Natural Language Processing (NLP) techniques offer new opportunities for liberating such Testing using approaches annotate machine actionable formats is...

10.1101/2025.02.18.638830 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2025-02-23

The fields of taxonomy and biodiversity research have witnessed an exponential growth in published literature. This vast corpus articles holds information on the diverse biological traits organisms their ecologies. However, access to extraction relevant data from this extensive resource remain challenging. Advances text mining (TDM) Natural Language Processing (NLP) techniques offer new opportunities for liberating such Testing using approaches annotate machine actionable formats is...

10.3897/arphapreprints.e153174 preprint EN cc-by 2025-03-18

10.1006/jare.1997.0309 article EN Journal of Arid Environments 1997-11-01
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