David Allemang

ORCID: 0000-0002-0227-211X
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About
Contact & Profiles
Research Areas
  • Cardiac Valve Diseases and Treatments
  • AI in cancer detection
  • Medical Image Segmentation Techniques
  • Single-cell and spatial transcriptomics
  • Cell Image Analysis Techniques
  • Morphological variations and asymmetry
  • Neuroinflammation and Neurodegeneration Mechanisms
  • Robotics and Sensor-Based Localization
  • Advanced Neural Network Applications
  • Genomics and Phylogenetic Studies
  • Congenital heart defects research
  • Congenital Heart Disease Studies
  • COVID-19 diagnosis using AI
  • Medical Imaging and Analysis
  • Cardiovascular Function and Risk Factors
  • Dental Radiography and Imaging

Kitware (United States)
2021-2023

Children's Hospital of Philadelphia
2022

Michael Hawrylycz Maryann E. Martone Giorgio A. Ascoli Jan G. Bjaalie Hong‐Wei Dong and 95 more Satrajit Ghosh Jesse Gillis Ronna Hertzano David R. Haynor Patrick R. Hof Yongsoo Kim Ed S. Lein Yufeng Liu Jeremy A. Miller Partha P. Mitra Eran A. Mukamel Lydia Ng David Osumi-Sutherland Hanchuan Peng Patrick L. Ray Raymond Sanchez Aviv Regev Alex Ropelewski Richard H. Scheuermann Shawn Zheng Kai Tan Carol L. Thompson Timothy L. Tickle Hagen Tilgner Merina Varghese Brock A. Wester Owen White Hongkui Zeng Brian D. Aevermann David Allemang Seth A. Ament Thomas L. Athey C L Baker Katherine Baker Pamela Baker Anita Bandrowski Samik Banerjee Prajal Bishwakarma Ambrose Carr Min Chen Roni Choudhury Jonah Cool Heather H. Creasy Florence D. D’Orazi Kylee Degatano Ben Dichter Song‐Lin Ding Tim Dolbeare Joseph R. Ecker Rongxin Fang Jean‐Christophe Fillion‐Robin Timothy P. Fliss James C. Gee Tom Gillespie Nathan W. Gouwens Guo‐Qiang Zhang Yaroslav O. Halchenko Nomi L. Harris Brian R. Herb Houri Hintiryan Gregory Hood S. Horvath Bing‐Xing Huo Dorota Jarecka Shengdian Jiang Farzaneh Khajouei Elizabeth Kiernan Hüseyin Kır Lauren Kruse Changkyu Lee Boudewijn P. F. Lelieveldt Yang Eric Li Hanqing Liu Lijuan Liu Anup Markuhar James C. Mathews Kaylee L. Mathews Christopher Mezias Michael I. Miller Tyler Mollenkopf Shoaib Mufti Chris Mungall Joshua Orvis Maja Puchades Lei Qu Joseph P. Receveur Bing Ren Nathan Sjoquist Brian Staats Daniel J. Tward Cindy T. J. van Velthoven Quanxin Wang Fangming Xie Hua Xu Zizhen Yao Zhixi Yun

Characterizing cellular diversity at different levels of biological organization and across data modalities is a prerequisite to understanding the function cell types in brain. Classification neurons also essential manipulate controlled ways understand their variation vulnerability brain disorders. The BRAIN Initiative Cell Census Network (BICCN) an integrated network data-generating centers, archives, standards developers, with goal systematic multimodal type profiling characterization....

10.1371/journal.pbio.3002133 article EN cc-by PLoS Biology 2023-06-30

To present and validate an open-source fully automated landmark placement (ALICBCT) tool for cone-beam computed tomography scans.One hundred forty-three large medium field of view (CBCT) were used to train test a novel approach, called ALICBCT that reformulates detection as classification problem through virtual agent placed inside volumetric images. The agents trained navigate in multi-scale space reach the estimated position. movements decision relies on combination DenseNet feature...

10.1111/ocr.12642 article EN cc-by-nc-nd Orthodontics and Craniofacial Research 2023-02-22

In hypoplastic left heart syndrome, tricuspid regurgitation (TR) is associated with circulatory failure and death. We hypothesized that the valve (TV) structure of patients syndrome a Fontan circulation moderate or greater TR differs from those mild less TR, right ventricle volume TV dysfunction.TV 100 were modeled using transthoracic 3-dimensional echocardiograms custom software in SlicerHeart. Associations to grade function investigated. Shape parameterization analysis was used calculate...

10.1161/circimaging.122.014671 article EN cc-by-nc-nd Circulation Cardiovascular Imaging 2023-03-01
Michael Hawrylycz Maryann E. Martone Patrick R. Hof Ed S. Lein Aviv Regev and 94 more Giorgio A. Ascoli Jan G. Bjaalie Hong‐Wei Dong Satrajit Ghosh Jesse Gillis Ronna Hertzano David R. Haynor Yongsoo Kim Yufeng Liu Jeremy A. Miller Partha P. Mitra Eran A. Mukamel David Osumi-Sutherland Hanchuan Peng Patrick L. Ray Raymond Sanchez Alex Ropelewski Richard H. Scheuermann Shawn Zheng Kai Tan Timothy L. Tickle Hagen Tilgner Merina Varghese Brock A. Wester Owen White Brian D. Aevermann David Allemang Seth A. Ament Thomas L. Athey Pamela Baker C L Baker Katherine Baker Anita Bandrowski Prajal Bishwakarma Ambrose Carr Min Chen Roni Choudhury Jonah Cool Heather H. Creasy Florence D. D’Orazi Kylee Degatano Ben Dichter Song‐Lin Ding Tim Dolbeare Joseph R. Ecker Rongxin Fang Jean‐Christophe Fillion‐Robin Timothy P. Fliss James C. Gee Tom Gillespie Nathan W. Gouwens Yaroslav O. Halchenko Nomi L. Harris Brian R. Herb Houri Hintiryan Gregory Hood S. Horvath Dorota Jarecka Shengdian Jiang Farzaneh Khajouei Elizabeth Kiernan Hüseyin Kır Lauren Kruse Changkyu Lee Boudewijn P. F. Lelieveldt Yang Eric Li Hanqing Liu Anup Markuhar James C. Mathews Kaylee L. Mathews Michael I. Miller Tyler Mollenkopf Shoaib Mufti Chris Mungall Lydia Ng Joshua Orvis Maja Puchades Lei Qu Joseph P. Receveur Bing Ren Nathan Sjoquist Brian Staats Carol L. Thompson Daniel J. Tward Cindy T. J. van Velthoven Quanxin Wang Fangming Xie Hua Xu Zizhen Yao Zhixi Yun Hongkui Zeng Guo‐Qiang Zhang Yun Zhang W. Jim Zheng Brian Zingg

Abstract Characterizing cellular diversity at different levels of biological organization across data modalities is a prerequisite to understanding the function cell types in brain. Classification neurons also required manipulate controlled ways, and understand their variation vulnerability brain disorders. The BRAIN Initiative Cell Census Network (BICCN) an integrated network generating centers, archives standards developers, with goal systematic multimodal type profiling characterization....

10.1101/2022.10.26.513573 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2022-10-30

Shape analysis is an important and powerful tool in a wide variety of medical applications. Many shape techniques require representations which are correspondence. Unfortunately, popular for generating do not handle objects with complex geometry or topology well, those that typically readily available non-expert users. We describe method correspondences across population using given template. also its implementation distribution via SlicerSALT, open-source platform making more widely usable....

10.1117/12.2579716 article EN 2021-02-12
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